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***  bacteriorhodopsin  ***

<R2> analysis for 2404222055381936730

---  normal mode 9  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1065
ILE 40.0040
THR 50.0034
GLY 60.0038
ARG 70.0028
PRO 80.0018
GLU 90.0011
TRP 100.0020
ILE 110.0018
TRP 120.0015
LEU 130.0020
ALA 140.0029
LEU 150.0029
GLY 160.0027
THR 170.0032
ALA 180.0037
LEU 190.0037
MET 200.0033
GLY 210.0035
LEU 220.0035
GLY 230.0030
THR 240.0026
LEU 250.0023
TYR 260.0020
PHE 270.0019
LEU 280.0021
VAL 290.0019
LYS 300.0018
GLY 310.0026
MET 320.0038
GLY 330.0046
VAL 340.0061
SER 350.0073
ASP 360.0061
PRO 370.0054
ASP 380.0035
ALA 390.0039
LYS 400.0047
LYS 410.0039
PHE 420.0026
TYR 430.0029
ALA 440.0034
ILE 450.0031
THR 460.0023
THR 470.0024
LEU 480.0028
VAL 490.0029
PRO 500.0029
ALA 510.0029
ILE 520.0028
ALA 530.0028
PHE 540.0029
THR 550.0028
MET 560.0026
TYR 570.0025
LEU 580.0033
SER 590.0032
MET 600.0026
LEU 610.0029
LEU 620.0040
GLY 630.0037
TYR 640.0043
GLY 650.0033
LEU 660.0037
THR 670.0046
MET 680.0059
VAL 690.0058
PRO 700.0077
PHE 710.0075
GLY 720.0092
GLY 730.0110
GLU 740.0095
GLN 750.0082
ASN 760.0055
PRO 770.0040
ILE 780.0027
TYR 790.0021
TRP 800.0020
ALA 810.0024
ARG 820.0016
TYR 830.0016
ALA 840.0021
ASP 850.0025
TRP 860.0026
LEU 870.0029
PHE 880.0031
THR 890.0031
THR 900.0033
PRO 910.0036
LEU 920.0032
LEU 930.0030
LEU 940.0030
LEU 950.0031
ASP 960.0024
LEU 970.0022
ALA 980.0023
LEU 990.0025
LEU 1000.0020
VAL 1010.0019
ASP 1020.0028
ALA 1030.0026
ASP 1040.0041
GLN 1050.0053
GLY 1060.0055
THR 1070.0044
ILE 1080.0041
LEU 1090.0053
ALA 1100.0052
LEU 1110.0043
VAL 1120.0043
GLY 1130.0049
ALA 1140.0045
ASP 1150.0040
GLY 1160.0036
ILE 1170.0036
MET 1180.0031
ILE 1190.0027
GLY 1200.0022
THR 1210.0015
GLY 1220.0008
LEU 1230.0009
VAL 1240.0014
GLY 1250.0015
ALA 1260.0019
LEU 1270.0032
THR 1280.0040
LYS 1290.0061
VAL 1300.0062
TYR 1310.0062
SER 1320.0061
TYR 1330.0043
ARG 1340.0034
PHE 1350.0038
VAL 1360.0031
TRP 1370.0016
TRP 1380.0020
ALA 1390.0031
ILE 1400.0029
SER 1410.0027
THR 1420.0032
ALA 1430.0038
ALA 1440.0040
MET 1450.0038
LEU 1460.0039
TYR 1470.0044
ILE 1480.0039
LEU 1490.0037
TYR 1500.0040
VAL 1510.0036
LEU 1520.0028
PHE 1530.0030
PHE 1540.0031
GLY 1550.0026
PHE 1560.0022
THR 1570.0027
SER 1580.0028
LYS 1590.0021
ALA 1600.0031
GLU 1610.0046
SER 1620.0047
MET 1630.0050
ARG 1640.0078
PRO 1650.0074
GLU 1660.0051
VAL 1670.0043
ALA 1680.0046
SER 1690.0048
THR 1700.0032
PHE 1710.0025
LYS 1720.0033
VAL 1730.0033
LEU 1740.0024
ARG 1750.0027
ASN 1760.0031
VAL 1770.0030
THR 1780.0029
VAL 1790.0031
VAL 1800.0028
LEU 1810.0029
TRP 1820.0030
SER 1830.0030
ALA 1840.0027
TYR 1850.0024
PRO 1860.0020
VAL 1870.0028
VAL 1880.0021
TRP 1890.0017
LEU 1900.0031
ILE 1910.0038
GLY 1920.0030
SER 1930.0032
GLU 1940.0027
GLY 1950.0037
ALA 1960.0051
GLY 1970.0048
ILE 1980.0052
VAL 1990.0038
PRO 2000.0031
LEU 2010.0021
ASN 2020.0012
ILE 2030.0015
GLU 2040.0012
THR 2050.0003
LEU 2060.0011
LEU 2070.0018
PHE 2080.0017
MET 2090.0021
VAL 2100.0026
LEU 2110.0027
ASP 2120.0027
VAL 2130.0031
SER 2140.0030
ALA 2150.0030
LYS 2160.0030
VAL 2170.0030
GLY 2180.0028
PHE 2190.0026
GLY 2200.0022
LEU 2210.0021
ILE 2220.0022
LEU 2230.0018
LEU 2240.0017
ARG 2250.0020
SER 2260.0021
ARG 2270.0032
ALA 2280.0031
ILE 2290.0027
PHE 2300.0044
GLY 2310.0047
GLU 2320.0206
ALA 2330.0498
GLU 2340.1065

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.