This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
ASP 1
ALA 2
-0.0385
ALA 2
GLU 3
-0.0387
GLU 3
PHE 4
0.1283
PHE 4
ARG 5
-0.0505
ARG 5
HIS 6
0.1872
HIS 6
ASP 7
0.1775
ASP 7
SER 8
0.1016
SER 8
GLY 9
-0.2354
GLY 9
TYR 10
0.1694
TYR 10
GLU 11
-0.1466
GLU 11
VAL 12
0.0376
VAL 12
HIS 13
-0.3088
HIS 13
HIS 14
0.2012
HIS 14
GLN 15
-0.1417
GLN 15
LYS 16
0.1042
LYS 16
LEU 17
0.0254
LEU 17
VAL 18
-0.0308
VAL 18
PHE 19
0.0826
PHE 19
PHE 20
-0.1823
PHE 20
ALA 21
0.0922
ALA 21
GLU 22
-0.1350
GLU 22
ASP 23
-0.1109
ASP 23
VAL 24
0.0739
VAL 24
GLY 25
-0.0775
GLY 25
SER 26
-0.0535
SER 26
ASN 27
0.0404
ASN 27
LYS 28
-0.1180
LYS 28
GLY 29
-0.1368
GLY 29
ALA 30
-0.4352
ALA 30
ILE 31
0.1163
ILE 31
ILE 32
-0.1169
ILE 32
GLY 33
-0.2764
GLY 33
LEU 34
0.5707
LEU 34
MET 35
-0.3458
MET 35
VAL 36
-0.0068
VAL 36
GLY 37
-0.4750
GLY 37
GLY 38
-0.1246
GLY 38
VAL 39
-0.5613
VAL 39
VAL 40
0.3630
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.