This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
ASP 1
VAL 2
0.0348
VAL 2
GLU 3
0.0086
GLU 3
PHE 4
0.0105
PHE 4
LYS 5
-0.0429
LYS 5
CYS 6
0.0181
CYS 6
THR 7
0.1473
THR 7
CYS 8
-0.1149
CYS 8
SER 9
0.0532
SER 9
ARG 10
0.0985
ARG 10
GLU 11
-0.0537
GLU 11
ARG 12
0.0634
ARG 12
CYS 13
-0.0400
CYS 13
ALA 14
0.0218
ALA 14
ASP 15
0.0092
ASP 15
ALA 16
0.0500
ALA 16
LEU 17
-0.0415
LEU 17
LYS 18
0.0478
LYS 18
THR 19
0.0168
THR 19
LEU 20
-0.0266
LEU 20
PRO 21
0.0190
PRO 21
ASP 22
-0.0033
ASP 22
GLU 23
-0.0084
GLU 23
GLU 24
0.0027
GLU 24
VAL 25
0.0159
VAL 25
ASP 26
-0.0062
ASP 26
SER 27
0.0043
SER 27
ILE 28
0.0357
ILE 28
LEU 29
-0.0047
LEU 29
ALA 30
0.0267
ALA 30
GLU 31
0.0058
GLU 31
ASP 32
-0.0007
ASP 32
GLY 33
0.0333
GLY 33
GLU 34
-0.0165
GLU 34
ILE 35
-0.0249
ILE 35
ASP 36
0.0121
ASP 36
MET 37
-0.0303
MET 37
HIS 38
-0.0420
HIS 38
CYS 39
-0.0433
CYS 39
ASP 40
-0.0216
ASP 40
TYR 41
-0.0914
TYR 41
CYS 42
0.2065
CYS 42
GLY 43
-0.1331
GLY 43
ASN 44
0.0362
ASN 44
HIS 45
0.0819
HIS 45
TYR 46
-0.1655
TYR 46
LEU 47
0.0635
LEU 47
PHE 48
-0.0394
PHE 48
ASN 49
0.0073
ASN 49
ALA 50
-0.0121
ALA 50
MET 51
0.0078
MET 51
ASP 52
0.0189
ASP 52
ILE 53
0.0070
ILE 53
ALA 54
0.0003
ALA 54
GLU 55
0.0015
GLU 55
ILE 56
0.0348
ILE 56
ARG 57
-0.0140
ARG 57
ASN 58
0.0047
ASN 58
ASN 59
-0.0049
ASN 59
ALA 60
0.0431
ALA 60
SER 61
-0.0058
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.