This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
ALA 1
GLU 2
-0.0070
GLU 2
ALA 3
-0.0117
ALA 3
GLU 4
0.0260
GLU 4
SER 5
-0.0514
SER 5
ALA 6
0.0004
ALA 6
LEU 7
0.0316
LEU 7
GLU 8
0.0008
GLU 8
TYR 9
-0.0466
TYR 9
ALA 10
-0.0033
ALA 10
GLN 11
0.0559
GLN 11
GLN 12
-0.0816
GLN 12
ALA 13
0.0113
ALA 13
LEU 14
0.0768
LEU 14
GLU 15
-0.0318
GLU 15
LYS 16
-0.0386
LYS 16
ALA 17
0.0649
ALA 17
GLN 18
0.0197
GLN 18
LEU 19
-0.1229
LEU 19
ALA 20
0.0522
ALA 20
LEU 21
0.0716
LEU 21
GLN 22
-0.0299
GLN 22
ALA 23
-0.0356
ALA 23
ALA 24
0.0574
ALA 24
ARG 25
0.0122
ARG 25
GLN 26
-0.0153
GLN 26
ALA 27
0.0195
ALA 27
LEU 28
0.0070
LEU 28
LYS 29
-0.0201
LYS 29
ALA 30
0.0157
ALA 30
ALA 1
-0.0153
ALA 1
GLU 2
0.0014
GLU 2
ALA 3
-0.0068
ALA 3
GLU 4
0.0191
GLU 4
SER 5
-0.0620
SER 5
ALA 6
0.0167
ALA 6
LEU 7
0.0369
LEU 7
GLU 8
-0.0077
GLU 8
TYR 9
-0.0373
TYR 9
ALA 10
0.0109
ALA 10
GLN 11
0.0483
GLN 11
GLN 12
-0.0398
GLN 12
ALA 13
-0.0011
ALA 13
LEU 14
0.0469
LEU 14
GLU 15
-0.0099
GLU 15
LYS 16
0.0007
LYS 16
ALA 17
0.0536
ALA 17
GLN 18
0.0877
GLN 18
LEU 19
-0.0975
LEU 19
ALA 20
0.0297
ALA 20
LEU 21
0.0823
LEU 21
GLN 22
-0.0433
GLN 22
ALA 23
-0.0546
ALA 23
ALA 24
0.0502
ALA 24
ARG 25
0.0281
ARG 25
GLN 26
-0.0343
GLN 26
ALA 27
0.0170
ALA 27
LEU 28
0.0057
LEU 28
LYS 29
-0.0119
LYS 29
ALA 30
0.0171
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.