This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
ALA 1
GLU 2
-0.0024
GLU 2
ALA 3
0.0573
ALA 3
GLU 4
-0.0278
GLU 4
SER 5
-0.0131
SER 5
ALA 6
0.0555
ALA 6
LEU 7
0.0040
LEU 7
GLU 8
-0.0018
GLU 8
TYR 9
0.0341
TYR 9
ALA 10
0.0740
ALA 10
GLN 11
0.0172
GLN 11
GLN 12
0.0026
GLN 12
ALA 13
0.0366
ALA 13
LEU 14
0.1381
LEU 14
GLU 15
0.0329
GLU 15
LYS 16
0.0416
LYS 16
ALA 17
0.0936
ALA 17
GLN 18
-0.0526
GLN 18
LEU 19
0.0177
LEU 19
ALA 20
0.1106
ALA 20
LEU 21
0.0674
LEU 21
GLN 22
0.0012
GLN 22
ALA 23
0.1043
ALA 23
ALA 24
0.0486
ALA 24
ARG 25
0.0588
ARG 25
GLN 26
0.0685
GLN 26
ALA 27
0.0352
ALA 27
LEU 28
-0.0175
LEU 28
LYS 29
-0.0676
LYS 29
ALA 30
0.0417
ALA 30
ALA 1
-0.0291
ALA 1
GLU 2
-0.0215
GLU 2
ALA 3
0.0462
ALA 3
GLU 4
-0.0151
GLU 4
SER 5
0.0125
SER 5
ALA 6
0.0470
ALA 6
LEU 7
0.0164
LEU 7
GLU 8
0.0114
GLU 8
TYR 9
0.0416
TYR 9
ALA 10
0.0823
ALA 10
GLN 11
0.0241
GLN 11
GLN 12
-0.0237
GLN 12
ALA 13
0.1001
ALA 13
LEU 14
0.1445
LEU 14
GLU 15
0.0164
GLU 15
LYS 16
0.0697
LYS 16
ALA 17
0.1534
ALA 17
GLN 18
-0.0451
GLN 18
LEU 19
0.0120
LEU 19
ALA 20
0.0621
ALA 20
LEU 21
0.1779
LEU 21
GLN 22
0.0139
GLN 22
ALA 23
0.0959
ALA 23
ALA 24
0.0211
ALA 24
ARG 25
0.0271
ARG 25
GLN 26
0.0325
GLN 26
ALA 27
0.0414
ALA 27
LEU 28
-0.0022
LEU 28
LYS 29
-0.0319
LYS 29
ALA 30
0.0445
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.