CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  TRANSPORT PROTEIN 26-OCT-20 7DCE  ***

<R2> analysis for 2603031115043683922

---  normal mode 14  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0270
GLY 1030.0177
PRO 1040.0149
PRO 1050.0117
ARG 1060.0083
VAL 1070.0059
LYS 1080.0040
ALA 1090.0051
VAL 1100.0058
LYS 1110.0078
SER 1120.0073
SER 1130.0103
GLU 1140.0111
HIS 1150.0120
ILE 1160.0126
ASN 1170.0134
GLU 1180.0139
GLY 1190.0156
GLU 1200.0154
THR 1210.0144
ALA 1220.0128
MET 1230.0119
LEU 1240.0100
VAL 1250.0077
CYS 1260.0061
LYS 1270.0047
SER 1280.0063
GLU 1290.0083
SER 1300.0114
VAL 1310.0147
PRO 1320.0159
PRO 1330.0124
VAL 1340.0122
THR 1350.0149
ASP 1360.0154
TRP 1370.0134
ALA 1380.0137
TRP 1390.0133
TYR 1400.0143
LYS 1410.0150
ILE 1420.0143
THR 1430.0184
ASP 1440.0195
SER 1450.0194
GLU 1460.0196
ASP 1470.0175
LYS 1480.0183
ALA 1490.0178
LEU 1500.0174
MET 1510.0189
GLN 1520.0184
GLY 1530.0194
SER 1540.0196
GLU 1550.0214
SER 1560.0212
ARG 1570.0189
PHE 1580.0174
PHE 1590.0160
VAL 1600.0140
SER 1610.0127
SER 1620.0115
SER 1630.0104
GLN 1640.0100
GLY 1650.0079
ARG 1660.0070
SER 1670.0096
GLU 1680.0100
LEU 1690.0118
HIS 1700.0134
ILE 1710.0151
GLU 1720.0170
ASN 1730.0173
LEU 1740.0155
ASN 1750.0159
MET 1760.0153
GLU 1770.0146
ALA 1780.0161
ASP 1790.0154
PRO 1800.0145
GLY 1810.0132
GLN 1820.0119
TYR 1830.0116
ARG 1840.0101
CYS 1850.0096
GLN 1860.0106
GLY 1870.0108
THR 1880.0149
SER 1890.0156
SER 1900.0193
LYS 1910.0187
GLY 1920.0168
SER 1930.0132
ASP 1940.0098
GLN 1950.0082
ALA 1960.0061
ILE 1970.0074
ILE 1980.0091
THR 1990.0103
LEU 2000.0114
ARG 2010.0127
VAL 2020.0139
ARG 2030.0100
SER 2040.0097
HIS 2050.0088
LEU 2060.0091
ALA 2070.0089
ALA 2080.0035
LEU 2090.0027
TRP 2100.0014
PRO 2110.0019
PHE 2120.0030
LEU 2130.0045
GLY 2140.0037
ILE 2150.0054
VAL 2160.0067
ALA 2170.0060
GLU 2180.0078
VAL 2190.0081
LEU 2200.0085
VAL 2210.0085
LEU 2220.0085
VAL 2230.0092
THR 2240.0096
ILE 2250.0096
ILE 2260.0091
PHE 2270.0092
ILE 2280.0097
TYR 2290.0096
GLU 2300.0087
LYS 2310.0084
ARG 2320.0090
ARG 2330.0096
LYS 2340.0088
GLY 70.0255
ALA 80.0220
LEU 90.0201
LEU 100.0214
ARG 110.0205
ASP 120.0156
LEU 130.0152
VAL 140.0173
LEU 150.0158
GLY 160.0127
VAL 170.0131
LEU 180.0148
GLY 190.0125
THR 200.0110
ALA 210.0137
ALA 220.0134
PHE 230.0121
LEU 240.0126
LEU 250.0145
ASP 260.0142
LEU 270.0140
GLY 280.0157
THR 290.0159
ASP 300.0148
LEU 310.0158
TRP 320.0182
ALA 330.0159
ALA 340.0159
VAL 350.0186
GLN 360.0179
TYR 370.0159
ALA 380.0181
LEU 390.0203
GLY 400.0182
GLY 410.0167
ARG 420.0154
TYR 430.0165
LEU 440.0140
TRP 450.0125
ALA 460.0153
ALA 470.0149
LEU 480.0125
VAL 490.0129
LEU 500.0147
ALA 510.0132
LEU 520.0118
LEU 530.0122
GLY 540.0119
LEU 550.0104
ALA 560.0098
SER 570.0095
VAL 580.0086
ALA 590.0076
LEU 600.0072
GLN 610.0065
LEU 620.0051
PHE 630.0043
SER 640.0037
TRP 650.0029
LEU 660.0026
TRP 670.0026
LEU 680.0028
ARG 690.0039
ALA 700.0046
ASP 710.0058
PRO 720.0101
ALA 730.0124
GLY 740.0112
LEU 750.0088
HIS 760.0108
GLY 770.0080
SER 780.0059
GLN 790.0054
PRO 800.0052
PRO 810.0077
ARG 820.0067
ARG 830.0071
CYS 840.0053
LEU 850.0038
ALA 860.0058
LEU 870.0074
LEU 880.0061
HIS 890.0061
LEU 900.0086
LEU 910.0097
GLN 920.0096
LEU 930.0088
GLY 940.0072
TYR 950.0070
LEU 960.0075
TYR 970.0045
ARG 980.0057
CYS 990.0083
VAL 1000.0075
GLN 1010.0069
GLU 1020.0094
LEU 1030.0110
ARG 1040.0099
GLN 1050.0113
GLY 1060.0141
LEU 1070.0151
LEU 1080.0149
VAL 1090.0181
TRP 1100.0202
GLN 1110.0196
GLN 1120.0217
GLU 1130.0265
GLU 1140.0270
PRO 1150.0241
SER 1160.0251
GLU 1170.0235
PHE 1180.0201
ASP 1190.0178
LEU 1200.0189
ALA 1210.0171
TYR 1220.0128
ALA 1230.0131
ASP 1240.0140
PHE 1250.0108
LEU 1260.0091
ALA 1270.0103
LEU 1280.0096
ASP 1290.0072
ILE 1300.0083
SER 1310.0101
MET 1320.0079
LEU 1330.0074
ARG 1340.0093
LEU 1350.0097
PHE 1360.0085
GLU 1370.0094
THR 1380.0105
PHE 1390.0101
LEU 1400.0097
GLU 1410.0109
THR 1420.0113
ALA 1430.0105
PRO 1440.0106
GLN 1450.0115
LEU 1460.0114
THR 1470.0094
LEU 1480.0099
VAL 1490.0102
LEU 1500.0090
ALA 1510.0084
ILE 1520.0077
MET 1530.0074
LEU 1540.0057
GLN 1550.0053
SER 1560.0057
GLY 1570.0054
ARG 1580.0075
ALA 1590.0095
GLU 1600.0120
TYR 1610.0146
TYR 1620.0146
GLN 1630.0125
TRP 1640.0129
VAL 1650.0142
GLY 1660.0129
ILE 1670.0128
CYS 1680.0130
THR 1690.0129
SER 1700.0125
PHE 1710.0124
LEU 1720.0138
GLY 1730.0121
ILE 1740.0120
SER 1750.0130
TRP 1760.0118
ALA 1770.0109
LEU 1780.0116
LEU 1790.0123
ASP 1800.0110
TYR 1810.0102
HIS 1820.0117
ARG 1830.0121
ALA 1840.0105
LEU 1850.0102
ARG 1860.0117
THR 1870.0120
CYS 1880.0109
LEU 1890.0119
PRO 1900.0134
SER 1910.0141
LYS 1920.0151
PRO 1930.0162
LEU 1940.0169
LEU 1950.0163
GLY 1960.0142
LEU 1970.0141
GLY 1980.0152
SER 1990.0139
SER 2000.0129
VAL 2010.0141
ILE 2020.0134
TYR 2030.0121
PHE 2040.0121
LEU 2050.0133
TRP 2060.0130
ASN 2070.0106
LEU 2080.0109
LEU 2090.0118
LEU 2100.0115
LEU 2110.0108
TRP 2120.0089
PRO 2130.0093
ARG 2140.0091
VAL 2150.0088
LEU 2160.0092
ALA 2170.0071
VAL 2180.0077
ALA 2190.0077
LEU 2200.0069
PHE 2210.0070
SER 2220.0075
ALA 2230.0061
LEU 2240.0049
PHE 2250.0066
PRO 2260.0083
SER 2270.0080
TYR 2280.0075
VAL 2290.0081
ALA 2300.0095
LEU 2310.0090
HIS 2320.0085
PHE 2330.0089
LEU 2340.0094
GLY 2350.0092
LEU 2360.0091
TRP 2370.0089
LEU 2380.0087
VAL 2390.0090
LEU 2400.0088
LEU 2410.0083
LEU 2420.0077
TRP 2430.0080
VAL 2440.0074
TRP 2450.0069
LEU 2460.0073
GLN 2470.0068
GLY 2480.0055
THR 2490.0048
ASP 2500.0043
PHE 2510.0049
MET 2520.0037
PRO 2530.0033
ASP 2540.0023
PRO 2550.0021
SER 2560.0028
SER 2570.0032
GLU 2580.0037
TRP 2590.0048
LEU 2600.0053
TYR 2610.0054
ARG 2620.0064
VAL 2630.0070
THR 2640.0075
VAL 2650.0078
ALA 2660.0084
THR 2670.0086
ILE 2680.0087
LEU 2690.0090
TYR 2700.0093
PHE 2710.0095
SER 2720.0099
TRP 2730.0097
PHE 2740.0088
ASN 2750.0085
VAL 2760.0076
ALA 2770.0072
GLU 2780.0079
GLY 2790.0090
ARG 2800.0095
THR 2810.0105
ARG 2820.0110
GLY 2830.0105
ARG 2840.0098
ALA 2850.0106
ILE 2860.0114
ILE 2870.0100
HIS 2880.0095
PHE 2890.0100
ALA 2900.0105
PHE 2910.0099
LEU 2920.0085
LEU 2930.0083
SER 2940.0086
ASP 2950.0084
SER 2960.0077
ILE 2970.0048
LEU 2980.0049
LEU 2990.0050
VAL 3000.0042
ALA 3010.0038
THR 3020.0030
TRP 3030.0027
VAL 3040.0028
THR 3050.0031
HIS 3060.0034
SER 3070.0063
SER 3080.0070
TRP 3090.0061
LEU 3100.0054
PRO 3110.0057
SER 3120.0091
GLY 3130.0076
ILE 3140.0073
PRO 3150.0080
LEU 3160.0072
GLN 3170.0099
LEU 3180.0086
TRP 3190.0074
LEU 3200.0081
PRO 3210.0082
VAL 3220.0086
GLY 3230.0102
CYS 3240.0118
GLY 3250.0103
CYS 3260.0099
PHE 3270.0124
PHE 3280.0135
LEU 3290.0129
GLY 3300.0118
LEU 3310.0127
ALA 3320.0146
LEU 3330.0137
ARG 3340.0126
LEU 3350.0136
VAL 3360.0140
TYR 3370.0138
TYR 3380.0130
HIS 3390.0141
TRP 3400.0148
LEU 3410.0140
HIS 3420.0132
PRO 3430.0129
SER 3440.0127
CYS 3450.0118
LEU 3680.0171
PRO 3690.0133
GLN 3700.0121
ASN 3710.0089
ARG 3720.0072
ARG 3730.0061
MET 3740.0080
THR 3750.0087
HIS 3760.0073
LEU 3770.0081
ALA 3780.0092
GLN 3790.0091
LYS 3800.0085
PHE 3810.0097
PHE 3820.0109
PRO 3830.0106
SER 20.0093
VAL 30.0095
GLU 40.0097
GLU 50.0101
SER 60.0119
GLY 70.0132
GLY 80.0102
ARG 90.0102
LEU 100.0114
VAL 110.0156
THR 120.0189
PRO 130.0225
GLY 140.0258
THR 150.0237
PRO 160.0238
LEU 170.0203
THR 180.0194
LEU 190.0158
THR 200.0157
CYS 210.0132
THR 220.0146
VAL 230.0136
SER 240.0146
GLY 250.0151
PHE 260.0149
SER 270.0169
LEU 280.0166
SER 290.0183
ASP 300.0151
TYR 310.0124
ALA 320.0125
MET 330.0118
ASN 340.0114
TRP 350.0122
VAL 360.0114
ARG 370.0119
GLN 380.0117
ALA 390.0135
PRO 400.0124
GLY 410.0139
LYS 420.0139
GLY 430.0132
LEU 440.0115
GLU 450.0137
TRP 460.0133
ILE 470.0160
GLY 480.0162
ILE 490.0147
ILE 500.0162
TYR 510.0154
ALA 520.0166
SER 530.0197
GLY 540.0207
SER 550.0207
ARG 560.0202
TYR 570.0191
TYR 580.0197
ALA 590.0197
SER 600.0230
TRP 610.0236
ALA 620.0228
LYS 630.0253
GLY 640.0269
ARG 650.0249
PHE 660.0224
THR 670.0227
ILE 680.0203
SER 690.0216
LYS 700.0206
THR 710.0224
SER 720.0224
THR 730.0194
THR 740.0177
VAL 750.0171
ASP 760.0186
LEU 770.0186
LYS 780.0216
ILE 790.0221
THR 800.0262
SER 810.0263
PRO 820.0224
THR 830.0232
THR 840.0214
GLU 850.0216
ASP 860.0189
THR 870.0149
ALA 880.0126
THR 890.0095
TYR 900.0103
PHE 910.0085
CYS 920.0092
ALA 930.0075
ARG 940.0078
TYR 950.0081
TYR 960.0065
ALA 970.0061
GLY 980.0074
SER 990.0061
ASP 1000.0036
ILE 1010.0041
TRP 1020.0047
GLY 1030.0055
PRO 1040.0044
GLY 1050.0059
THR 1060.0075
LEU 1070.0085
VAL 1080.0118
THR 1090.0124
VAL 1100.0160
SER 1110.0162
SER 1120.0129
ALA 1130.0099
SER 1140.0093
THR 1150.0102
LYS 1160.0111
GLY 1170.0126
PRO 1180.0103
SER 1190.0088
VAL 1200.0073
PHE 1210.0055
PRO 1220.0034
LEU 1230.0029
ALA 1240.0038
PRO 1250.0066
SER 1260.0084
SER 1270.0133
GLY 1330.0166
THR 1340.0142
ALA 1350.0110
ALA 1360.0088
LEU 1370.0062
GLY 1380.0059
CYS 1390.0056
LEU 1400.0050
VAL 1410.0070
LYS 1420.0068
ASP 1430.0082
TYR 1440.0087
PHE 1450.0093
PRO 1460.0098
GLU 1470.0099
PRO 1480.0119
VAL 1490.0112
THR 1500.0121
VAL 1510.0105
SER 1520.0115
TRP 1530.0113
ASN 1540.0119
SER 1550.0143
GLY 1560.0155
ALA 1570.0155
LEU 1580.0142
THR 1590.0154
SER 1600.0160
GLY 1610.0136
VAL 1620.0117
HIS 1630.0090
THR 1640.0083
PHE 1650.0069
PRO 1660.0074
ALA 1670.0067
VAL 1680.0053
LEU 1690.0057
GLN 1700.0057
SER 1710.0060
SER 1720.0072
GLY 1730.0072
LEU 1740.0075
TYR 1750.0070
SER 1760.0064
LEU 1770.0063
SER 1780.0054
SER 1790.0074
VAL 1800.0074
VAL 1810.0097
THR 1820.0110
VAL 1830.0127
PRO 1840.0144
SER 1850.0128
SER 1860.0139
SER 1870.0124
LEU 1880.0090
GLY 1890.0085
THR 1900.0099
GLN 1910.0099
THR 1920.0082
TYR 1930.0076
ILE 1940.0082
CYS 1950.0087
ASN 1960.0114
VAL 1970.0113
ASN 1980.0124
HIS 1990.0125
LYS 2000.0149
PRO 2010.0146
SER 2020.0145
ASN 2030.0169
THR 2040.0147
LYS 2050.0142
VAL 2060.0119
ASP 2070.0109
LYS 2080.0081
LYS 2090.0064
VAL 2100.0041
GLU 2110.0030
PRO 2120.0041
LYS 2130.0052
SER 2140.0072
ALA 10.0192
ASP 20.0160
VAL 30.0149
VAL 40.0144
MET 50.0127
THR 60.0116
GLN 70.0111
THR 80.0115
PRO 90.0114
SER 100.0106
SER 110.0098
VAL 120.0104
SER 130.0103
ALA 140.0109
ALA 150.0109
VAL 160.0100
GLY 170.0110
GLY 180.0111
THR 190.0113
VAL 200.0108
THR 210.0110
ILE 220.0108
ASN 230.0110
CYS 240.0111
GLN 250.0112
ALA 260.0125
SER 270.0140
GLN 280.0141
SER 290.0133
ILE 300.0112
SER 310.0120
ALA 320.0100
TYR 330.0092
LEU 340.0094
ALA 350.0080
TRP 360.0088
TYR 370.0080
GLN 380.0079
GLN 390.0075
LYS 400.0073
PRO 410.0079
GLY 420.0059
GLN 430.0048
PRO 440.0047
PRO 450.0058
LYS 460.0050
LEU 470.0055
LEU 480.0064
ILE 490.0070
TYR 500.0070
ASP 510.0082
ALA 520.0089
SER 530.0085
ASP 540.0073
LEU 550.0066
ALA 560.0065
SER 570.0059
GLY 580.0053
VAL 590.0058
SER 600.0065
SER 610.0091
ARG 620.0091
PHE 630.0090
LYS 640.0098
GLY 650.0100
SER 660.0112
GLY 670.0117
SER 680.0120
GLY 690.0123
THR 700.0118
GLN 710.0114
PHE 720.0110
THR 730.0107
LEU 740.0103
THR 750.0102
ILE 760.0104
SER 770.0106
ALA 780.0104
LEU 790.0098
GLU 800.0093
CYS 810.0091
ALA 820.0095
ASP 830.0095
ALA 840.0082
ALA 850.0083
THR 860.0091
TYR 870.0094
TYR 880.0098
CYS 890.0105
GLN 900.0105
SER 910.0115
TYR 920.0105
TYR 930.0117
ALA 940.0130
ILE 950.0132
ILE 960.0151
THR 970.0168
TYR 980.0162
GLY 990.0147
ALA 1000.0126
ALA 1010.0127
PHE 1020.0113
GLY 1030.0120
GLY 1040.0120
GLY 1050.0108
THR 1060.0104
GLU 1070.0095
VAL 1080.0100
VAL 1090.0094
VAL 1100.0099
LYS 1110.0100
ARG 1120.0114
THR 1130.0115
VAL 1140.0099
ALA 1150.0105
ALA 1160.0113
PRO 1170.0098
SER 1180.0104
VAL 1190.0088
PHE 1200.0082
ILE 1210.0065
PHE 1220.0045
PRO 1230.0049
PRO 1240.0042
SER 1250.0035
ASP 1260.0059
GLU 1270.0063
GLN 1280.0066
LEU 1290.0085
LYS 1300.0102
SER 1310.0108
GLY 1320.0114
THR 1330.0091
ALA 1340.0069
SER 1350.0044
VAL 1360.0037
VAL 1370.0028
CYS 1380.0044
LEU 1390.0056
LEU 1400.0072
ASN 1410.0085
ASN 1420.0098
PHE 1430.0090
TYR 1440.0087
PRO 1450.0076
ARG 1460.0072
GLU 1470.0059
ALA 1480.0058
LYS 1490.0052
VAL 1500.0050
GLN 1510.0074
TRP 1520.0080
LYS 1530.0110
VAL 1540.0122
ASP 1550.0153
ASN 1560.0157
ALA 1570.0147
LEU 1580.0122
GLN 1590.0102
SER 1600.0088
GLY 1610.0078
ASN 1620.0075
SER 1630.0044
GLN 1640.0026
GLU 1650.0023
SER 1660.0044
VAL 1670.0055
THR 1680.0064
GLU 1690.0076
GLN 1700.0084
ASP 1710.0095
SER 1720.0107
LYS 1730.0114
ASP 1740.0107
CYS 1750.0097
THR 1760.0096
TYR 1770.0079
SER 1780.0069
LEU 1790.0051
SER 1800.0040
SER 1810.0026
THR 1820.0023
LEU 1830.0046
THR 1840.0065
LEU 1850.0091
SER 1860.0122
LYS 1870.0123
ALA 1880.0151
ASP 1890.0143
TYR 1900.0117
GLU 1910.0135
LYS 1920.0160
HIS 1930.0149
LYS 1940.0144
VAL 1950.0135
TYR 1960.0103
ALA 1970.0101
CYS 1980.0084
GLU 1990.0098
VAL 2000.0088
THR 2010.0082
HIS 2020.0085
GLN 2030.0099
GLY 2040.0114
LEU 2050.0117
SER 2060.0147
SER 2070.0145
PRO 2080.0126
VAL 2090.0123
THR 2100.0119
LYS 2110.0113
SER 2120.0113
PHE 2130.0111
ASN 2140.0123
ARG 2150.0112
GLY 2160.0116
GLU 2170.0129

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.