CNRS Nantes University US2B US2B
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Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been hacked on november 27th.
It has been moved away and runs again.
**Still some additional cleaning from time to time**
Sorry for the inconvenience.


***  TRANSPORT PROTEIN 26-OCT-20 7DCE  ***

Normal Mode Analysis for ID 2603031115043683922

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.6918
mode 8 1.27 0.6162
mode 9 1.82 0.7126
mode 10 3.14 0.5945
mode 11 3.80 0.6669
mode 12 4.38 0.6725
mode 13 5.45 0.6461
mode 14 5.71 0.7297
mode 15 6.20 0.4210
mode 16 6.31 0.4789
mode 17 7.47 0.6307
mode 18 7.75 0.4910
mode 19 8.01 0.5500
mode 20 8.80 0.3154
mode 21 9.01 0.3871
mode 22 9.13 0.3898
mode 23 9.68 0.3593
mode 24 10.21 0.0016
mode 25 10.50 0.3779
mode 26 10.95 0.2129
mode 27 11.12 0.3584
mode 28 11.54 0.3453
mode 29 11.62 0.2745
mode 30 11.80 0.2726
mode 31 12.31 0.2494
mode 32 12.56 0.2096
mode 33 12.94 0.4546
mode 34 13.19 0.3624
mode 35 13.64 0.2493
mode 36 13.71 0.4189
mode 37 13.85 0.4438
mode 38 14.10 0.2843
mode 39 14.29 0.2710
mode 40 14.92 0.2376
mode 41 15.08 0.0692
mode 42 15.20 0.3469
mode 43 15.40 0.2483
mode 44 15.67 0.4057
mode 45 15.83 0.3905
mode 46 15.89 0.3900
mode 47 16.14 0.2865
mode 48 16.26 0.3268
mode 49 16.53 0.5741
mode 50 16.90 0.4304
mode 51 17.15 0.2461
mode 52 17.30 0.3418
mode 53 17.43 0.3452
mode 54 17.60 0.4929
mode 55 17.65 0.3511
mode 56 17.81 0.4762
mode 57 17.94 0.4146
mode 58 18.07 0.5202
mode 59 18.25 0.5717
mode 60 18.34 0.6015
mode 61 18.71 0.4694
mode 62 18.76 0.3766
mode 63 18.82 0.4607
mode 64 18.90 0.1569
mode 65 19.19 0.3440
mode 66 19.41 0.0813
mode 67 19.51 0.2933
mode 68 19.66 0.3463
mode 69 19.74 0.3001
mode 70 19.86 0.3920
mode 71 20.05 0.3202
mode 72 20.26 0.3099
mode 73 20.49 0.4174
mode 74 20.71 0.4530
mode 75 20.86 0.2636
mode 76 21.12 0.3715
mode 77 21.19 0.2978
mode 78 21.35 0.2934
mode 79 21.36 0.4772
mode 80 21.58 0.3663
mode 81 21.67 0.3457
mode 82 21.79 0.4654
mode 83 22.05 0.4129
mode 84 22.34 0.3605
mode 85 22.50 0.4172
mode 86 22.51 0.3246
mode 87 22.67 0.1546
mode 88 22.81 0.4234
mode 89 22.97 0.2278
mode 90 23.15 0.2835
mode 91 23.22 0.3050
mode 92 23.28 0.4673
mode 93 23.52 0.3563
mode 94 23.59 0.1005
mode 95 23.74 0.2870
mode 96 23.82 0.2830
mode 97 23.97 0.0560
mode 98 24.11 0.2866
mode 99 24.13 0.4269
mode 100 24.30 0.2825
mode 101 24.36 0.3655
mode 102 24.46 0.4551
mode 103 24.50 0.1244
mode 104 24.78 0.2563
mode 105 24.90 0.2876
mode 106 24.93 0.4002

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: december 26th, 2025.