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Normal Mode Analysis for ID 2604241234251995880

Conformational change expected to be analysed

%Projmod-Wn> Eigenvector 11 Norm= 1.0001 %Projmod-Wn> Eigenvector 25 Norm= 0.9999 %Projmod-Wn> Eigenvector 63 Norm= 1.0001 %Projmod-Wn> Eigenvector 86 Norm= 0.9999

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 2 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

WARNING: Rotation-translation modes have a cumulative overlap of 0.6780 !!! This probably means that the second conformation was not fitted properly onto the first one.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity cumulative overlap amplitude (dq)
mode 7 1.00 0.0115 0.000 -1.2316
mode 8 1.32 0.6222 0.327 14.1443
mode 9 1.46 0.6239 0.657 -14.1275
mode 10 1.86 0.6276 0.700 5.1762
mode 11 2.24 0.0156 0.736 -4.7615
mode 12 2.53 0.4526 0.744 2.0241
mode 13 2.81 0.6109 0.744 0.3684
mode 14 2.91 0.7358 0.762 3.3634
mode 15 2.96 0.4123 0.762 0.6140
mode 16 3.07 0.3722 0.762 0.8866
mode 17 3.29 0.4427 0.765 1.4000
mode 18 3.32 0.2991 0.769 0.6343
mode 19 3.46 0.2795 0.776 -2.4416
mode 20 3.52 0.2855 0.780 -1.6134
mode 21 3.64 0.2940 0.795 -2.9215
mode 22 3.87 0.2846 0.795 0.2700
mode 23 3.88 0.5040 0.795 -0.4289
mode 24 4.01 0.3386 0.805 -2.5313
mode 25 4.12 0.3430 0.805 -0.1017
mode 26 4.22 0.4900 0.809 0.9800
mode 27 4.28 0.4293 0.809 -0.9166
mode 28 4.32 0.3828 0.816 -1.9294
mode 29 4.43 0.3343 0.816 0.9377
mode 30 4.48 0.3806 0.816 0.6041
mode 31 4.54 0.5856 0.824 -1.8178
mode 32 4.69 0.4028 0.827 -1.6331
mode 33 4.85 0.4143 0.827 -0.9307
mode 34 4.98 0.4255 0.827 0.1101
mode 35 5.04 0.2807 0.838 2.3124
mode 36 5.19 0.3647 0.838 -0.4078
mode 37 5.30 0.4568 0.842 1.7099
mode 38 5.37 0.4289 0.842 0.4059
mode 39 5.51 0.4343 0.842 0.0153
mode 40 5.55 0.4621 0.845 1.0471
mode 41 5.57 0.5287 0.849 1.3188
mode 42 5.64 0.5033 0.856 2.1716
mode 43 5.86 0.5435 0.856 -0.9142
mode 44 5.90 0.4234 0.856 0.5497
mode 45 5.99 0.5207 0.856 0.8380
mode 46 6.12 0.4958 0.860 0.6263
mode 47 6.19 0.3338 0.860 -1.2229
mode 48 6.25 0.4261 0.867 1.9840
mode 49 6.36 0.3013 0.867 0.7983
mode 50 6.40 0.3886 0.867 -0.0976
mode 51 6.44 0.3859 0.871 1.2886
mode 52 6.60 0.4004 0.874 -1.5389
mode 53 6.64 0.5493 0.878 -1.3696
mode 54 6.80 0.4462 0.878 -0.3876
mode 55 6.82 0.4993 0.878 0.4563
mode 56 6.88 0.5497 0.882 0.8344
mode 57 6.91 0.5140 0.882 0.7217
mode 58 7.04 0.3856 0.882 1.1112
mode 59 7.16 0.5047 0.885 -1.0946
mode 60 7.21 0.3639 0.885 -0.6507
mode 61 7.28 0.3749 0.885 0.5823
mode 62 7.32 0.4121 0.885 0.1574
mode 63 7.40 0.3939 0.889 0.9032
mode 64 7.53 0.4485 0.889 -0.9898
mode 65 7.54 0.3218 0.889 0.0738
mode 66 7.58 0.5864 0.889 -0.7672
mode 67 7.71 0.5033 0.889 -0.2187
mode 68 7.77 0.5479 0.889 0.1443
mode 69 7.85 0.5600 0.889 0.0881
mode 70 7.96 0.4919 0.889 0.3398
mode 71 8.05 0.4871 0.889 0.4252
mode 72 8.09 0.5412 0.892 0.9960
mode 73 8.13 0.5161 0.892 -0.3875
mode 74 8.31 0.5384 0.892 -0.6397
mode 75 8.34 0.3400 0.892 0.3901
mode 76 8.44 0.5612 0.900 -2.1296
mode 77 8.49 0.5627 0.900 0.4030
mode 78 8.52 0.5801 0.900 0.3945
mode 79 8.67 0.4018 0.900 0.0744
mode 80 8.70 0.5135 0.903 0.5862
mode 81 8.88 0.5205 0.907 -1.8777
mode 82 8.91 0.5359 0.911 -1.3296
mode 83 8.93 0.5253 0.911 -0.3561
mode 84 9.01 0.4926 0.911 0.7391
mode 85 9.11 0.5403 0.911 -0.4967
mode 86 9.12 0.4527 0.911 0.2656
mode 87 9.21 0.5344 0.914 -1.2600
mode 88 9.24 0.5472 0.914 -0.5688
mode 89 9.37 0.4914 0.914 0.2941
mode 90 9.42 0.5317 0.914 0.4214
mode 91 9.44 0.6156 0.918 -0.8581
mode 92 9.50 0.5794 0.918 -0.3310
mode 93 9.67 0.5142 0.921 -1.2465
mode 94 9.72 0.5026 0.921 -0.9189
mode 95 9.84 0.5059 0.925 1.3015
mode 96 9.91 0.4117 0.925 0.7826
mode 97 9.95 0.5193 0.925 0.6378
mode 98 10.02 0.4240 0.925 0.6537
mode 99 10.05 0.4936 0.929 -1.0155
mode 100 10.16 0.4586 0.929 1.1546
mode 101 10.20 0.4356 0.932 0.7482
mode 102 10.32 0.4953 0.932 0.4119
mode 103 10.32 0.4309 0.932 0.6822
mode 104 10.42 0.4447 0.936 1.2118
mode 105 10.44 0.5551 0.936 -0.5604
mode 106 10.51 0.6094 0.936 -0.2529

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.