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***  aspartate Amino transferase open to closed cut off 8  ***

Normal Mode Analysis for ID 2604241301222004511

Conformational change expected to be analysed

%Projmod-Wn> Eigenvector 8 Norm= 1.0001 %Projmod-Wn> Eigenvector 10 Norm= 0.9998 %Projmod-Wn> Eigenvector 14 Norm= 1.0001 %Projmod-Wn> Eigenvector 45 Norm= 0.9999 %Projmod-Wn> Eigenvector 57 Norm= 0.9999 %Projmod-Wn> Eigenvector 72 Norm= 1.0001 %Projmod-Wn> Eigenvector 81 Norm= 1.0001

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 4 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity cumulative overlap amplitude (dq)
mode 7 1.00 0.0226 0.035 -6.1847
mode 8 1.28 0.0345 0.051 4.2911
mode 9 3.11 0.0224 0.051 -0.2931
mode 10 4.89 0.0334 0.062 -3.4416
mode 11 9.53 0.1096 0.204 12.4988
mode 12 12.21 0.3588 0.375 -13.7359
mode 13 13.03 0.4587 0.641 17.1099
mode 14 15.56 0.0465 0.657 4.2567
mode 15 15.87 0.1321 0.657 -0.1065
mode 16 18.95 0.1825 0.692 -6.1448
mode 17 21.34 0.3452 0.693 1.1743
mode 18 22.19 0.0510 0.708 -4.0871
mode 19 23.71 0.4424 0.721 -3.7920
mode 20 25.85 0.1246 0.722 -1.0366
mode 21 26.36 0.2266 0.722 -0.4706
mode 22 28.80 0.4823 0.746 -5.1172
mode 23 29.94 0.5107 0.773 -5.4190
mode 24 30.41 0.2516 0.784 -3.5275
mode 25 31.83 0.5548 0.795 3.4783
mode 26 32.72 0.2310 0.831 6.2753
mode 27 33.58 0.3332 0.832 1.4204
mode 28 34.20 0.3484 0.833 0.4922
mode 29 35.01 0.1926 0.850 4.4232
mode 30 35.47 0.2474 0.857 2.7707
mode 31 36.34 0.3415 0.863 2.5307
mode 32 37.48 0.5756 0.865 -1.2802
mode 33 38.39 0.2854 0.867 -1.4667
mode 34 39.01 0.3109 0.867 -0.7635
mode 35 39.61 0.4791 0.874 2.7207
mode 36 40.51 0.2311 0.874 0.0308
mode 37 42.16 0.5831 0.874 0.5021
mode 38 43.29 0.0486 0.874 -0.5120
mode 39 44.47 0.4353 0.875 0.9661
mode 40 44.98 0.4778 0.876 0.9075
mode 41 45.68 0.5090 0.876 -0.4812
mode 42 47.02 0.4040 0.877 -0.8734
mode 43 48.25 0.2562 0.877 0.8281
mode 44 49.10 0.5226 0.878 -1.0493
mode 45 49.91 0.4861 0.880 1.2229
mode 46 51.20 0.3869 0.880 0.1433
mode 47 51.52 0.5807 0.880 -0.5026
mode 48 51.61 0.2795 0.880 -0.6955
mode 49 52.65 0.5456 0.881 0.9069
mode 50 53.51 0.4061 0.881 0.3042
mode 51 54.17 0.5585 0.882 0.6000
mode 52 54.85 0.4424 0.882 0.0488
mode 53 55.48 0.3188 0.883 1.2653
mode 54 55.97 0.4685 0.883 -0.0530
mode 55 56.33 0.2397 0.883 0.1770
mode 56 56.55 0.5635 0.883 -0.1436
mode 57 57.07 0.3078 0.884 1.0668
mode 58 57.95 0.5026 0.884 -0.3067
mode 59 58.17 0.5739 0.885 0.5817
mode 60 59.46 0.5759 0.885 -0.7176
mode 61 59.92 0.4053 0.885 -0.0587
mode 62 60.25 0.4572 0.886 -0.7282
mode 63 60.44 0.2242 0.886 -0.9828
mode 64 61.62 0.3966 0.886 0.0063
mode 65 62.13 0.5504 0.887 0.6091
mode 66 62.48 0.4343 0.887 0.0783
mode 67 63.52 0.3248 0.887 -0.5999
mode 68 64.04 0.5958 0.887 0.0241
mode 69 64.63 0.4918 0.887 -0.0208
mode 70 65.03 0.6353 0.887 -0.2265
mode 71 65.57 0.5655 0.887 -0.6113
mode 72 65.98 0.3648 0.889 1.3007
mode 73 66.27 0.2752 0.890 -0.8060
mode 74 66.83 0.4400 0.890 0.6133
mode 75 66.94 0.4111 0.891 -1.0981
mode 76 67.83 0.4881 0.892 -1.2668
mode 77 68.39 0.4611 0.893 0.7304
mode 78 69.04 0.5244 0.893 0.5526
mode 79 69.56 0.4650 0.893 -0.3344
mode 80 70.23 0.2267 0.893 0.3196
mode 81 70.68 0.4067 0.894 -0.3723
mode 82 71.66 0.4946 0.894 0.2722
mode 83 72.06 0.5139 0.895 1.0761
mode 84 72.19 0.3860 0.895 0.6508
mode 85 73.33 0.3955 0.895 -0.0614
mode 86 73.57 0.5622 0.895 -0.5434
mode 87 74.15 0.3580 0.895 -0.3017
mode 88 74.42 0.4908 0.895 -0.1721
mode 89 75.11 0.4715 0.896 -0.7354
mode 90 76.03 0.5003 0.896 0.1538
mode 91 76.29 0.3275 0.896 -0.5613
mode 92 77.02 0.4551 0.896 -0.1067
mode 93 77.40 0.5367 0.896 0.2462
mode 94 77.69 0.5342 0.896 0.1597
mode 95 78.44 0.4426 0.897 0.7175
mode 96 78.78 0.2810 0.897 -0.2405
mode 97 79.35 0.4393 0.897 0.3904
mode 98 79.60 0.4318 0.897 -0.4771
mode 99 79.97 0.2961 0.898 0.6800
mode 100 80.47 0.4057 0.900 1.5765
mode 101 80.86 0.3727 0.900 0.4827
mode 102 81.14 0.3923 0.900 -0.3602
mode 103 81.58 0.4120 0.902 1.2954
mode 104 82.26 0.4426 0.902 0.2013
mode 105 82.67 0.2777 0.902 -0.0548
mode 106 82.88 0.0851 0.902 -0.8372

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.