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***  Aspartate Amino transferase open to closed cut off 8  ***

Normal Mode Analysis for ID 2604241321152018336

Conformational change expected to be analysed

%Projmod-Wn> Eigenvector 7 Norm= 1.0001 %Projmod-Wn> Eigenvector 10 Norm= 1.0001 %Projmod-Wn> Eigenvector 84 Norm= 1.0002

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 5 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity cumulative overlap amplitude (dq)
mode 7 1.00 0.0357 0.004 2.0576
mode 8 1.73 0.0270 0.064 8.1296
mode 9 3.32 0.0179 0.064 0.7951
mode 10 6.54 0.0351 0.076 -3.5796
mode 11 12.26 0.0285 0.077 -1.1655
mode 12 17.54 0.3895 0.441 20.0114
mode 13 19.25 0.2882 0.583 12.5078
mode 14 23.65 0.2528 0.602 -4.5735
mode 15 24.31 0.1169 0.667 8.4997
mode 16 27.77 0.5350 0.708 6.6914
mode 17 33.25 0.0204 0.713 2.5158
mode 18 34.22 0.5433 0.780 8.5829
mode 19 35.41 0.1631 0.784 2.1029
mode 20 38.37 0.1723 0.787 -1.8428
mode 21 40.91 0.4214 0.821 -6.0826
mode 22 41.16 0.4638 0.822 -1.2492
mode 23 43.05 0.3864 0.822 -0.2059
mode 24 43.58 0.5233 0.823 -0.6638
mode 25 45.59 0.0783 0.824 0.9498
mode 26 46.97 0.5883 0.824 0.3820
mode 27 48.35 0.5048 0.824 0.5198
mode 28 49.61 0.1733 0.826 -1.4199
mode 29 50.46 0.3599 0.831 -2.2815
mode 30 51.55 0.4550 0.832 1.0201
mode 31 53.52 0.5495 0.834 -1.6192
mode 32 54.10 0.4239 0.837 -1.8491
mode 33 54.48 0.3356 0.838 -0.9869
mode 34 56.90 0.1708 0.838 -0.3871
mode 35 58.58 0.5812 0.838 -0.5760
mode 36 59.98 0.0149 0.841 -1.7995
mode 37 60.80 0.3688 0.845 -1.8989
mode 38 61.30 0.2765 0.845 0.7102
mode 39 62.28 0.2861 0.846 -0.8239
mode 40 62.82 0.2631 0.856 3.4056
mode 41 64.64 0.3373 0.857 1.1613
mode 42 65.00 0.4412 0.858 0.4580
mode 43 65.42 0.3835 0.859 1.1384
mode 44 67.33 0.4068 0.859 0.9147
mode 45 69.32 0.2257 0.870 -3.3424
mode 46 70.30 0.6313 0.870 -0.0054
mode 47 71.86 0.5003 0.871 -1.0160
mode 48 72.35 0.3757 0.871 -0.7477
mode 49 72.71 0.3758 0.871 0.4580
mode 50 73.62 0.4542 0.871 -0.1033
mode 51 75.91 0.5004 0.872 -0.7323
mode 52 76.59 0.4343 0.872 0.2347
mode 53 77.72 0.6038 0.873 -1.2585
mode 54 78.37 0.5505 0.874 -0.7564
mode 55 79.23 0.3951 0.874 -0.2557
mode 56 79.38 0.3925 0.874 0.2545
mode 57 82.06 0.5306 0.874 0.6248
mode 58 82.56 0.5298 0.875 -1.0907
mode 59 82.94 0.5264 0.875 -0.2309
mode 60 83.34 0.4348 0.875 0.1299
mode 61 84.85 0.5890 0.875 -0.1331
mode 62 85.10 0.4501 0.876 0.8294
mode 63 85.79 0.5258 0.876 -0.4062
mode 64 86.73 0.4725 0.876 -0.4824
mode 65 86.94 0.5679 0.876 0.3639
mode 66 87.64 0.2034 0.878 1.1166
mode 67 88.45 0.4981 0.878 0.6093
mode 68 88.53 0.5404 0.878 0.0738
mode 69 89.43 0.5546 0.879 -1.2929
mode 70 89.88 0.4533 0.880 -0.9351
mode 71 90.80 0.5046 0.880 -0.4206
mode 72 92.89 0.4800 0.882 -1.3091
mode 73 93.29 0.5437 0.882 -0.4763
mode 74 94.41 0.3539 0.882 -0.2744
mode 75 95.21 0.5011 0.882 0.3896
mode 76 96.08 0.3979 0.883 1.0444
mode 77 96.87 0.5216 0.884 -0.3763
mode 78 97.60 0.3090 0.885 1.1104
mode 79 98.37 0.4743 0.885 -0.4560
mode 80 99.05 0.3947 0.885 -0.0496
mode 81 99.47 0.4613 0.888 -1.7888
mode 82 100.27 0.4665 0.888 0.2940
mode 83 100.61 0.5380 0.888 0.8445
mode 84 101.40 0.3768 0.889 -0.8805
mode 85 102.59 0.5061 0.889 -0.1670
mode 86 103.65 0.5193 0.889 -0.4481
mode 87 104.29 0.4801 0.889 0.2862
mode 88 105.06 0.4940 0.889 -0.2476
mode 89 105.41 0.4475 0.890 -0.0830
mode 90 105.89 0.4324 0.890 0.0606
mode 91 106.17 0.3950 0.891 -1.3694
mode 92 107.42 0.4726 0.892 0.9520
mode 93 108.05 0.4434 0.892 0.1068
mode 94 108.78 0.4560 0.892 0.1726
mode 95 108.98 0.4777 0.893 -0.8986
mode 96 109.74 0.4109 0.893 0.4429
mode 97 110.77 0.4614 0.893 0.3928
mode 98 111.00 0.4068 0.894 0.8270
mode 99 111.98 0.4795 0.894 -0.2104
mode 100 112.84 0.5170 0.894 0.3015
mode 101 113.87 0.3950 0.894 -0.5136
mode 102 114.64 0.5076 0.894 -0.4556
mode 103 115.45 0.4946 0.894 0.4499
mode 104 115.56 0.0143 0.894 -0.0167
mode 105 116.10 0.5850 0.897 -1.4951
mode 106 116.32 0.3824 0.897 -0.0037

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.