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***  test_cutoff10_hıv  ***

Normal Mode Analysis for ID 2604251125092265882

Conformational change expected to be analysed

%Projmod-Wn> Eigenvector 37 Norm= 0.9999 %Projmod-Wn> Eigenvector 38 Norm= 1.0001

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity cumulative overlap amplitude (dq)
mode 7 1.00 0.0159 0.006 -0.7899
mode 8 3.69 0.1143 0.052 2.1970
mode 9 3.87 0.1896 0.550 -7.1940
mode 10 4.29 0.1252 0.672 -3.5717
mode 11 4.98 0.2180 0.676 0.6313
mode 12 5.82 0.1644 0.748 -2.7316
mode 13 7.33 0.3143 0.762 1.2339
mode 14 8.18 0.2746 0.764 0.3507
mode 15 9.30 0.1664 0.790 -1.6660
mode 16 9.73 0.2393 0.812 1.5018
mode 17 9.94 0.5120 0.813 0.3812
mode 18 11.05 0.2548 0.816 -0.5387
mode 19 12.47 0.2739 0.816 -0.1414
mode 20 13.07 0.4621 0.821 -0.7254
mode 21 13.17 0.3414 0.831 -1.0043
mode 22 13.88 0.3704 0.834 0.5181
mode 23 14.18 0.2391 0.843 -0.9916
mode 24 14.49 0.3179 0.846 0.4924
mode 25 14.73 0.5889 0.846 0.2537
mode 26 15.42 0.3797 0.849 -0.5287
mode 27 15.66 0.3890 0.854 -0.7251
mode 28 16.65 0.5381 0.855 -0.2964
mode 29 16.92 0.2434 0.856 0.4173
mode 30 17.29 0.5163 0.860 0.6332
mode 31 18.01 0.4430 0.862 -0.4757
mode 32 18.14 0.4677 0.864 -0.4606
mode 33 18.80 0.5010 0.866 -0.4376
mode 34 18.90 0.2691 0.871 -0.7274
mode 35 19.29 0.5619 0.872 0.2324
mode 36 19.61 0.7108 0.872 -0.1740
mode 37 20.19 0.3261 0.875 0.5243
mode 38 20.29 0.3261 0.876 -0.4144
mode 39 21.14 0.4700 0.879 -0.5140
mode 40 21.70 0.2413 0.879 0.1677
mode 41 22.19 0.3923 0.880 0.1941
mode 42 22.38 0.3635 0.882 0.4822
mode 43 22.55 0.3244 0.882 -0.0319
mode 44 22.83 0.2113 0.882 0.0038
mode 45 23.37 0.4231 0.882 -0.2230
mode 46 23.95 0.3644 0.882 -0.0513
mode 47 24.21 0.3413 0.882 0.0076
mode 48 24.45 0.4868 0.882 -0.0564
mode 49 24.65 0.1861 0.882 -0.0382
mode 50 24.73 0.4488 0.892 -0.9888
mode 51 25.53 0.4655 0.892 0.2513
mode 52 25.67 0.6187 0.895 0.5127
mode 53 25.96 0.1538 0.897 -0.3999
mode 54 26.47 0.5659 0.897 -0.2186
mode 55 26.60 0.2750 0.897 -0.0475
mode 56 26.91 0.4144 0.897 -0.2266
mode 57 27.45 0.2717 0.899 -0.3571
mode 58 27.95 0.2202 0.899 0.1846
mode 59 28.24 0.2596 0.899 0.0850
mode 60 28.58 0.4596 0.902 -0.5654
mode 61 28.73 0.5001 0.903 0.1875
mode 62 29.41 0.5416 0.903 0.2057
mode 63 29.60 0.3266 0.903 0.1336
mode 64 30.11 0.5474 0.903 0.1659
mode 65 30.50 0.3570 0.903 -0.0848
mode 66 30.87 0.4809 0.903 -0.0718
mode 67 31.49 0.4472 0.904 0.3040
mode 68 31.69 0.4598 0.906 -0.4317
mode 69 32.09 0.4447 0.910 -0.6279
mode 70 32.60 0.4835 0.910 -0.1844
mode 71 32.82 0.5188 0.912 -0.3813
mode 72 32.95 0.5003 0.916 0.6925
mode 73 33.39 0.3914 0.917 0.2330
mode 74 33.49 0.4577 0.917 -0.2048
mode 75 33.66 0.2956 0.917 0.1410
mode 76 33.85 0.4931 0.919 -0.3549
mode 77 34.00 0.4488 0.920 0.3670
mode 78 34.15 0.4011 0.920 0.0394
mode 79 34.41 0.5505 0.921 0.2765
mode 80 34.62 0.5223 0.922 -0.4231
mode 81 34.72 0.5405 0.923 0.3123
mode 82 35.08 0.4325 0.924 0.3160
mode 83 35.34 0.3935 0.925 -0.2726
mode 84 35.52 0.3967 0.925 -0.2211
mode 85 35.67 0.3977 0.926 0.3226
mode 86 36.02 0.5897 0.928 0.3323
mode 87 36.24 0.4333 0.928 -0.1027
mode 88 36.54 0.3634 0.928 -0.2204
mode 89 36.74 0.4830 0.928 -0.1988
mode 90 36.91 0.4912 0.929 -0.0756
mode 91 37.18 0.4261 0.929 -0.0321
mode 92 37.32 0.6113 0.929 -0.1012
mode 93 37.51 0.5068 0.929 0.1111
mode 94 37.72 0.5287 0.929 0.0792
mode 95 38.02 0.4110 0.929 -0.1489
mode 96 38.22 0.5128 0.929 0.2133
mode 97 38.30 0.4714 0.930 0.2164
mode 98 38.63 0.4856 0.930 -0.0881
mode 99 38.79 0.2178 0.930 0.0680
mode 100 38.90 0.5469 0.931 0.2785
mode 101 39.21 0.4939 0.931 0.0295
mode 102 39.28 0.3640 0.932 -0.2934
mode 103 39.48 0.4501 0.933 -0.3699
mode 104 39.84 0.5178 0.933 0.0291
mode 105 39.96 0.5323 0.933 0.2420
mode 106 40.24 0.4892 0.934 0.3010

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.