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Normal Mode Analysis for ID 2604281148222846743

Conformational change expected to be analysed

%Projmod-Wn> Atom 1 belongs to residue MET in a file and GLU in the other. %Projmod-Wn> Atom 2 belongs to residue ILE in a file and LEU in the other. %Projmod-Wn> Atom 5 belongs to residue PHE in a file and VAL in the other. %Projmod-Wn> Atom 6 belongs to residue MET in a file and ALA in the other. %Projmod-Wn> ... %Projmod-Wn> 284 atoms belong to different residues in the two pdb files. %Projmod-Wn> Eigenvector 14 Norm= 0.9999 %Projmod-Wn> Eigenvector 55 Norm= 1.0001 %Projmod-Wn> Eigenvector 83 Norm= 1.0001 %Projmod-Wn> Eigenvector 85 Norm= 1.0001

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: Rotation-translation modes have a cumulative overlap of 0.6970 !!! This probably means that the second conformation was not fitted properly onto the first one.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity cumulative overlap amplitude (dq)
mode 7 1.00 0.6954 0.000 -1.8349
mode 8 1.22 0.7114 0.024 -53.9667
mode 9 1.59 0.4624 0.068 -77.2849
mode 10 1.79 0.2821 0.068 -2.8764
mode 11 1.83 0.5377 0.077 28.8439
mode 12 1.99 0.5551 0.092 44.2228
mode 13 2.15 0.4279 0.097 21.6876
mode 14 2.24 0.1858 0.097 5.2434
mode 15 2.44 0.4081 0.101 22.1393
mode 16 2.52 0.2985 0.121 -51.5544
mode 17 2.68 0.2235 0.135 -44.6492
mode 18 2.77 0.3571 0.140 -27.0094
mode 19 2.94 0.3218 0.213 -94.8737
mode 20 3.05 0.5645 0.217 18.9327
mode 21 3.20 0.4919 0.241 -55.4834
mode 22 3.33 0.5406 0.280 73.3088
mode 23 3.39 0.6779 0.314 63.3671
mode 24 3.51 0.5489 0.324 -33.7927
mode 25 3.59 0.5242 0.328 -23.2989
mode 26 3.72 0.3725 0.328 14.3518
mode 27 3.85 0.4537 0.328 -12.7752
mode 28 3.89 0.4997 0.333 25.6084
mode 29 3.97 0.3047 0.338 4.3329
mode 30 4.14 0.4011 0.338 14.5926
mode 31 4.33 0.4288 0.338 -1.1745
mode 32 4.35 0.5093 0.343 -21.4620
mode 33 4.50 0.5328 0.343 6.1921
mode 34 4.58 0.4747 0.343 -0.4716
mode 35 4.76 0.5663 0.343 5.2363
mode 36 4.88 0.3112 0.343 -5.5916
mode 37 4.94 0.6697 0.377 -68.3585
mode 38 5.04 0.4059 0.401 52.7225
mode 39 5.10 0.4646 0.411 -37.9076
mode 40 5.14 0.4821 0.440 60.6929
mode 41 5.41 0.5109 0.440 -4.9421
mode 42 5.48 0.5448 0.444 -21.1274
mode 43 5.54 0.3862 0.488 -73.6313
mode 44 5.68 0.5255 0.488 13.0926
mode 45 5.86 0.4947 0.517 57.0764
mode 46 5.90 0.4387 0.517 -1.7556
mode 47 6.00 0.3983 0.517 -20.7768
mode 48 6.26 0.3614 0.536 46.6883
mode 49 6.36 0.5070 0.560 -55.6802
mode 50 6.38 0.5588 0.589 -59.1040
mode 51 6.48 0.4586 0.589 -20.4130
mode 52 6.55 0.5148 0.613 -55.7618
mode 53 6.68 0.5172 0.613 3.8800
mode 54 6.73 0.6394 0.618 21.1736
mode 55 6.80 0.3614 0.623 25.1937
mode 56 6.83 0.3270 0.633 -31.3953
mode 57 6.96 0.5170 0.647 -42.8745
mode 58 7.04 0.4570 0.662 -44.7486
mode 59 7.25 0.5443 0.686 53.6760
mode 60 7.36 0.3275 0.686 -16.2380
mode 61 7.41 0.3850 0.686 -10.1197
mode 62 7.55 0.3434 0.691 -18.1514
mode 63 7.68 0.4383 0.691 0.8002
mode 64 7.76 0.6007 0.700 -33.0708
mode 65 7.88 0.3976 0.710 38.9751
mode 66 7.93 0.5324 0.715 26.8329
mode 67 8.01 0.5503 0.720 17.0766
mode 68 8.06 0.6626 0.720 3.3760
mode 69 8.19 0.5466 0.724 23.9783
mode 70 8.31 0.4911 0.729 -29.2748
mode 71 8.34 0.5553 0.729 0.1031
mode 72 8.44 0.5099 0.739 33.7989
mode 73 8.57 0.2966 0.744 -22.5284
mode 74 8.62 0.5198 0.749 -26.1126
mode 75 8.77 0.5395 0.753 22.3386
mode 76 8.91 0.6128 0.753 3.5619
mode 77 8.99 0.3880 0.763 35.3380
mode 78 9.01 0.4397 0.763 -8.6297
mode 79 9.13 0.6036 0.763 -8.2224
mode 80 9.15 0.5020 0.768 -20.9411
mode 81 9.20 0.4539 0.782 -45.8201
mode 82 9.32 0.4947 0.797 -36.0768
mode 83 9.34 0.5594 0.811 -46.2993
mode 84 9.50 0.4919 0.811 -12.5606
mode 85 9.72 0.4626 0.826 40.7217
mode 86 9.77 0.4895 0.826 -5.6785
mode 87 9.88 0.5067 0.826 -15.6927
mode 88 9.95 0.5871 0.831 10.0901
mode 89 10.02 0.5061 0.836 29.8406
mode 90 10.11 0.4266 0.836 -14.9223
mode 91 10.12 0.4682 0.840 11.1519
mode 92 10.22 0.5323 0.840 -1.6749
mode 93 10.32 0.4830 0.840 -11.3967
mode 94 10.48 0.5296 0.845 -20.8398
mode 95 10.57 0.5890 0.855 -39.2439
mode 96 10.66 0.5670 0.855 -13.4387
mode 97 10.69 0.5333 0.860 24.1845
mode 98 10.85 0.6234 0.865 -18.8683
mode 99 10.95 0.3898 0.865 -6.6998
mode 100 11.07 0.5722 0.865 -8.5068
mode 101 11.17 0.4510 0.874 -30.0071
mode 102 11.19 0.3033 0.874 -11.5843
mode 103 11.22 0.5372 0.874 -14.2764
mode 104 11.35 0.3237 0.874 11.9597
mode 105 11.45 0.4873 0.874 -1.1472
mode 106 11.52 0.3796 0.879 9.5143

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.