CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  open_cutoff8  ***

Normal Mode Analysis for ID 2604281541072908788

Conformational change expected to be analysed

%Projmod-Wn> Eigenvector 20 Norm= 1.0001 %Projmod-Wn> Eigenvector 22 Norm= 1.0001 %Projmod-Wn> Eigenvector 24 Norm= 0.9999

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity cumulative overlap amplitude (dq)
mode 7 1.00 0.2166 0.001 1.1897
mode 8 1.00 0.1364 0.043 -9.3622
mode 9 1.00 0.7877 0.086 9.4283
mode 10 1.00 0.0197 0.089 2.8118
mode 11 1.00 0.1202 0.090 1.3275
mode 12 1.00 0.5587 0.090 0.5298
mode 13 1.00 0.7063 0.101 4.8498
mode 14 1.00 0.0408 0.112 4.7421
mode 15 1.00 0.3084 0.112 -0.1487
mode 16 1.00 0.0039 0.113 1.6447
mode 17 1.00 0.0772 0.114 1.7154
mode 18 1.00 0.3368 0.132 -5.9421
mode 19 1.03 0.0375 0.139 -3.8530
mode 20 1.03 0.0557 0.153 5.3746
mode 21 1.03 0.0319 0.183 -7.9312
mode 22 676.24 0.0054 0.202 -6.3426
mode 23 1529.24 0.0646 0.202 0.9221
mode 24 1932.15 0.0395 0.203 0.8859
mode 25 3015.12 0.0117 0.208 -3.5021
mode 26 4690.85 0.0604 0.223 5.5537
mode 27 6780.56 0.0301 0.226 -2.2935
mode 28 7352.94 0.2862 0.352 16.2218
mode 29 8418.29 0.2583 0.506 -17.9776
mode 30 9076.82 0.0499 0.557 -10.2787
mode 31 10044.85 0.4717 0.569 -5.0998
mode 32 10891.50 0.3988 0.584 5.5821
mode 33 11773.56 0.3579 0.587 -2.4987
mode 34 12634.41 0.0911 0.588 -1.2769
mode 35 12822.74 0.5126 0.592 3.2391
mode 36 13546.06 0.3889 0.594 1.6628
mode 37 14407.21 0.6025 0.599 3.4059
mode 38 15034.26 0.2858 0.608 4.1320
mode 39 16168.59 0.0290 0.608 0.7310
mode 40 16338.03 0.3608 0.629 6.6101
mode 41 16998.91 0.4651 0.645 -5.7842
mode 42 17448.97 0.2090 0.645 0.7735
mode 43 18443.59 0.0700 0.652 3.9261
mode 44 19630.38 0.3023 0.652 0.0375
mode 45 20018.82 0.3304 0.654 -1.8129
mode 46 20234.21 0.4414 0.655 1.7697
mode 47 20457.29 0.0457 0.656 -1.0852
mode 48 21333.53 0.4005 0.663 3.9153
mode 49 21519.18 0.2509 0.664 1.2360
mode 50 21604.32 0.2628 0.664 1.1162
mode 51 22156.74 0.2636 0.669 2.9915
mode 52 22751.79 0.4217 0.676 3.8371
mode 53 23307.65 0.4528 0.679 2.3419
mode 54 23754.12 0.3141 0.679 -0.9529
mode 55 24624.85 0.2844 0.685 3.6224
mode 56 25117.00 0.2195 0.689 -2.7775
mode 57 25599.68 0.3595 0.693 -3.0232
mode 58 25971.50 0.4201 0.693 0.0581
mode 59 26355.50 0.4619 0.697 -3.0233
mode 60 27075.21 0.4028 0.700 -2.2226
mode 61 27453.06 0.3693 0.702 2.3585
mode 62 28133.82 0.4152 0.703 -1.5032
mode 63 28256.82 0.2608 0.705 1.3058
mode 64 28585.18 0.4544 0.706 1.2508
mode 65 29069.94 0.3396 0.708 -2.3600
mode 66 29276.21 0.3255 0.708 0.0291
mode 67 29872.88 0.3168 0.709 -1.3262
mode 68 30071.94 0.3070 0.722 5.1965
mode 69 30306.76 0.4329 0.727 3.2778
mode 70 30797.53 0.4473 0.732 3.4999
mode 71 31353.88 0.3642 0.734 -1.5632
mode 72 31640.47 0.2737 0.735 -1.9897
mode 73 32207.59 0.4164 0.735 0.4266
mode 74 32397.06 0.5287 0.738 -1.8182
mode 75 32679.18 0.3292 0.738 -0.5988
mode 76 33419.88 0.4170 0.757 6.3670
mode 77 34367.82 0.3999 0.763 3.4801
mode 78 34560.21 0.3781 0.772 -4.3057
mode 79 34663.32 0.4377 0.776 -2.7214
mode 80 35072.88 0.4258 0.776 -0.9711
mode 81 35174.53 0.3719 0.779 -2.3446
mode 82 35792.53 0.3284 0.782 2.7388
mode 83 36315.91 0.4014 0.785 2.3473
mode 84 36720.91 0.2009 0.785 -0.6241
mode 85 37162.68 0.4931 0.786 -1.7697
mode 86 37558.56 0.2497 0.790 -2.8924
mode 87 37694.09 0.3500 0.792 -1.7668
mode 88 38444.29 0.2992 0.794 -2.5167
mode 89 38616.35 0.4854 0.795 -0.3759
mode 90 39036.71 0.3253 0.795 -0.2079
mode 91 39154.09 0.3424 0.810 5.5976
mode 92 40271.35 0.4457 0.810 0.3194
mode 93 40334.62 0.5024 0.813 2.2838
mode 94 41011.74 0.5283 0.813 -0.2894
mode 95 41259.68 0.2930 0.813 0.2501
mode 96 41407.74 0.4953 0.813 0.7149
mode 97 42176.53 0.2866 0.815 2.2246
mode 98 42285.24 0.4793 0.815 0.0836
mode 99 42369.56 0.5228 0.815 0.3770
mode 100 42753.00 0.4542 0.816 1.4869
mode 101 43109.38 0.4671 0.816 -0.5578
mode 102 43486.32 0.3500 0.816 0.0135
mode 103 43801.82 0.3593 0.817 -1.3896
mode 104 44242.06 0.3851 0.817 0.0811
mode 105 44334.18 0.3586 0.818 1.4851
mode 106 44586.53 0.3857 0.819 -1.1320

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.