CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  citrate_open_cutoff8  ***

Normal Mode Analysis for ID 2604281742252934881

Conformational change expected to be analysed

%Projmod-Wn> Atom 12 belongs to residue SER in a file and ALA in the other. %Projmod-Wn> Atom 30 belongs to residue ASN in a file and GLY in the other. %Projmod-Wn> Atom 33 belongs to residue VAL in a file and LEU in the other. %Projmod-Wn> Atom 52 belongs to residue ILE in a file and VAL in the other. %Projmod-Wn> ... %Projmod-Wn> 27 atoms belong to different residues in the two pdb files. %Projmod-Wn> Eigenvector 19 Norm= 0.9999 %Projmod-Wn> Eigenvector 20 Norm= 0.9999 %Projmod-Wn> Eigenvector 51 Norm= 1.0001

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity cumulative overlap amplitude (dq)
mode 7 1.00 0.6930 0.000 0.7799
mode 8 1.00 0.6363 0.002 -2.3133
mode 9 1.00 0.9520 0.003 -0.5585
mode 10 1.00 0.7300 0.007 2.6736
mode 11 1.00 0.0515 0.007 -0.1077
mode 12 1.03 0.0350 0.007 -1.2265
mode 13 1.03 0.0501 0.038 -7.8519
mode 14 1.03 0.0355 0.084 9.5660
mode 15 949.59 0.0648 0.085 -0.9986
mode 16 1802.44 0.0755 0.100 -5.4218
mode 17 2690.56 0.0700 0.103 -2.7986
mode 18 3307.94 0.0463 0.104 -1.5024
mode 19 3754.65 0.0744 0.111 3.7890
mode 20 5585.65 0.1248 0.118 3.5198
mode 21 6220.47 0.0782 0.170 -10.2635
mode 22 7608.44 0.1536 0.358 -19.3892
mode 23 8336.91 0.1673 0.394 8.4171
mode 24 9015.76 0.1278 0.472 12.5121
mode 25 9193.88 0.2899 0.482 -4.3262
mode 26 10017.21 0.2125 0.517 -8.3807
mode 27 10442.06 0.1845 0.525 4.1420
mode 28 10802.18 0.2049 0.525 -0.0106
mode 29 11457.41 0.2648 0.526 -1.2621
mode 30 11664.76 0.2670 0.528 2.3862
mode 31 12094.06 0.0258 0.528 -0.2433
mode 32 12810.79 0.5442 0.555 7.2352
mode 33 14350.47 0.0649 0.573 6.1459
mode 34 15128.97 0.6167 0.585 -4.7531
mode 35 15373.09 0.1147 0.591 3.6206
mode 36 15923.85 0.1776 0.591 -0.2791
mode 37 16696.21 0.3964 0.605 5.1132
mode 38 17079.71 0.5220 0.623 -6.0881
mode 39 18451.88 0.1094 0.623 0.0464
mode 40 18915.91 0.3477 0.628 2.9062
mode 41 19392.53 0.3682 0.629 -1.6196
mode 42 19627.79 0.2774 0.630 -1.7481
mode 43 20219.09 0.4218 0.631 0.9634
mode 44 20414.88 0.4804 0.632 1.4256
mode 45 21124.53 0.4660 0.657 7.1327
mode 46 21864.79 0.2412 0.662 -3.0373
mode 47 22839.06 0.3568 0.663 1.4007
mode 48 23562.26 0.2994 0.667 -3.0316
mode 49 23691.76 0.2204 0.668 1.1969
mode 50 23938.03 0.2197 0.672 2.4922
mode 51 24207.09 0.3077 0.677 3.5599
mode 52 24880.35 0.3026 0.677 -0.2522
mode 53 25208.21 0.3422 0.680 -1.7859
mode 54 25677.24 0.2661 0.681 1.6589
mode 55 26063.62 0.1877 0.681 -0.2104
mode 56 26394.18 0.2003 0.682 1.4349
mode 57 26588.62 0.5125 0.682 -0.7099
mode 58 27341.35 0.4153 0.683 1.3300
mode 59 27621.59 0.4644 0.693 4.4756
mode 60 28238.76 0.4283 0.695 -2.4071
mode 61 28425.97 0.3065 0.697 -1.2458
mode 62 28832.12 0.4272 0.700 -2.6662
mode 63 29352.76 0.4830 0.702 -2.1400
mode 64 29496.62 0.1588 0.702 -0.8176
mode 65 29624.29 0.1784 0.704 -1.9411
mode 66 29886.53 0.4091 0.708 -2.6641
mode 67 29980.24 0.5529 0.708 -0.1407
mode 68 30739.50 0.4552 0.709 -1.7214
mode 69 31036.71 0.4514 0.710 -0.6610
mode 70 31572.71 0.3397 0.710 0.6013
mode 71 32207.59 0.4664 0.710 0.1726
mode 72 32381.29 0.3094 0.711 1.9568
mode 73 32554.09 0.2764 0.714 -1.6018
mode 74 32772.68 0.4681 0.724 4.6015
mode 75 33312.88 0.3964 0.726 2.3436
mode 76 33511.29 0.4008 0.727 -1.3689
mode 77 33934.76 0.1968 0.729 -1.7016
mode 78 34751.50 0.5730 0.735 3.4089
mode 79 35448.91 0.3263 0.747 -5.0429
mode 80 35721.24 0.3968 0.747 -1.0777
mode 81 36301.88 0.4476 0.749 -0.8999
mode 82 36651.41 0.3409 0.750 -1.7434
mode 83 37327.00 0.4587 0.760 -4.4039
mode 84 37477.00 0.4551 0.764 2.9912
mode 85 37802.18 0.3580 0.764 -0.6572
mode 86 37950.29 0.2301 0.764 -0.4368
mode 87 38404.47 0.4971 0.764 0.7791
mode 88 38550.26 0.3194 0.768 -2.3242
mode 89 39452.53 0.4331 0.768 -0.3452
mode 90 39697.38 0.1697 0.769 1.9308
mode 91 39889.62 0.4340 0.769 0.3824
mode 92 40649.50 0.3979 0.770 1.1747
mode 93 40986.85 0.2964 0.771 -1.1274
mode 94 41555.26 0.3372 0.790 6.3596
mode 95 41812.21 0.4923 0.792 1.1888
mode 96 42333.44 0.3870 0.795 2.4640
mode 97 42549.74 0.5983 0.795 0.9066
mode 98 42609.62 0.4591 0.796 -1.6616
mode 99 42836.44 0.4778 0.797 -0.8704
mode 100 43215.74 0.4158 0.797 -0.6853
mode 101 43451.12 0.4890 0.799 2.4222
mode 102 43825.09 0.3132 0.802 -1.7938
mode 103 44207.44 0.2644 0.802 -0.8273
mode 104 44299.65 0.4768 0.803 1.4995
mode 105 44871.56 0.3744 0.804 1.6128
mode 106 44951.06 0.3292 0.804 -0.5049

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.