CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  7AMA_L5_corrected  ***

Normal Mode Analysis for ID 2608070735353363794

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.6759
mode 8 1.05 0.7086
mode 9 1.60 0.5899
mode 10 1.90 0.0683
mode 11 2.13 0.5035
mode 12 2.24 0.5028
mode 13 2.30 0.4164
mode 14 2.35 0.4436
mode 15 2.48 0.3468
mode 16 2.52 0.1959
mode 17 2.64 0.3301
mode 18 2.71 0.0361
mode 19 2.72 0.4777
mode 20 3.17 0.3458
mode 21 3.22 0.4194
mode 22 3.27 0.3318
mode 23 3.39 0.1864
mode 24 3.46 0.0094
mode 25 3.57 0.3892
mode 26 3.60 0.0924
mode 27 3.72 0.3305
mode 28 3.74 0.1454
mode 29 3.78 0.0808
mode 30 3.87 0.1173
mode 31 3.90 0.2077
mode 32 3.91 0.0761
mode 33 3.99 0.3681
mode 34 4.04 0.2699
mode 35 4.11 0.3889
mode 36 4.22 0.4254
mode 37 4.30 0.3481
mode 38 4.36 0.1987
mode 39 4.43 0.3788
mode 40 4.52 0.3041
mode 41 4.54 0.4383
mode 42 4.66 0.5267
mode 43 4.73 0.3639
mode 44 4.78 0.4285
mode 45 4.86 0.5140
mode 46 4.88 0.5842
mode 47 4.96 0.4957
mode 48 5.02 0.3490
mode 49 5.07 0.4881
mode 50 5.12 0.4370
mode 51 5.16 0.4893
mode 52 5.24 0.5324
mode 53 5.27 0.5745
mode 54 5.36 0.4342
mode 55 5.41 0.4805
mode 56 5.47 0.5054
mode 57 5.49 0.4023
mode 58 5.54 0.3501
mode 59 5.60 0.3857
mode 60 5.64 0.3543
mode 61 5.65 0.2937
mode 62 5.71 0.4602
mode 63 5.75 0.4935
mode 64 5.78 0.3775
mode 65 5.82 0.2789
mode 66 5.85 0.3440
mode 67 5.97 0.2748
mode 68 5.98 0.3274
mode 69 6.02 0.3125
mode 70 6.13 0.2880
mode 71 6.18 0.4061
mode 72 6.24 0.2589
mode 73 6.29 0.3673
mode 74 6.30 0.3195
mode 75 6.31 0.3211
mode 76 6.35 0.3468
mode 77 6.40 0.3378
mode 78 6.44 0.4019
mode 79 6.50 0.3550
mode 80 6.55 0.2702
mode 81 6.58 0.3497
mode 82 6.62 0.3326
mode 83 6.67 0.4587
mode 84 6.71 0.2720
mode 85 6.74 0.3094
mode 86 6.82 0.2888
mode 87 6.85 0.3778
mode 88 6.86 0.3060
mode 89 6.91 0.1714
mode 90 6.99 0.1789
mode 91 7.00 0.2205
mode 92 7.04 0.1852
mode 93 7.07 0.4108
mode 94 7.12 0.4033
mode 95 7.13 0.3421
mode 96 7.17 0.3756
mode 97 7.19 0.3636
mode 98 7.21 0.3567
mode 99 7.24 0.3548
mode 100 7.26 0.2850
mode 101 7.31 0.3719
mode 102 7.34 0.3678
mode 103 7.36 0.2778
mode 104 7.37 0.3009
mode 105 7.39 0.2378
mode 106 7.43 0.2380

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.