CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  secyeg_alpha_25_150_10_150_r  ***

Normal Mode Analysis for ID 260812015421419681

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 4 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.0673
mode 8 1.31 0.0763
mode 9 1.58 0.0690
mode 10 1.61 0.1556
mode 11 1.92 0.0387
mode 12 2.05 0.1068
mode 13 2.40 0.0394
mode 14 2.87 0.0716
mode 15 3.04 0.2996
mode 16 3.21 0.2048
mode 17 3.40 0.0652
mode 18 3.47 0.1203
mode 19 3.60 0.0484
mode 20 3.65 0.1288
mode 21 3.78 0.1920
mode 22 3.96 0.4130
mode 23 4.01 0.2356
mode 24 4.11 0.1961
mode 25 4.54 0.3521
mode 26 4.62 0.2069
mode 27 4.75 0.3584
mode 28 5.03 0.4109
mode 29 5.25 0.3400
mode 30 5.43 0.2391
mode 31 5.60 0.0924
mode 32 5.73 0.3502
mode 33 5.87 0.0198
mode 34 6.00 0.1768
mode 35 6.07 0.3812
mode 36 6.28 0.3786
mode 37 6.38 0.4552
mode 38 6.46 0.3943
mode 39 6.57 0.3907
mode 40 6.73 0.0892
mode 41 7.00 0.4907
mode 42 7.14 0.3181
mode 43 7.22 0.4169
mode 44 7.33 0.2241
mode 45 7.46 0.2598
mode 46 7.62 0.4297
mode 47 7.71 0.4322
mode 48 7.83 0.4504
mode 49 7.97 0.2039
mode 50 8.05 0.3666
mode 51 8.13 0.4007
mode 52 8.25 0.2815
mode 53 8.31 0.3613
mode 54 8.35 0.3216
mode 55 8.47 0.2280
mode 56 8.57 0.3319
mode 57 8.64 0.4329
mode 58 8.76 0.3157
mode 59 8.90 0.3810
mode 60 8.98 0.2592
mode 61 9.07 0.2904
mode 62 9.22 0.2939
mode 63 9.28 0.3874
mode 64 9.35 0.3719
mode 65 9.50 0.3937
mode 66 9.72 0.1577
mode 67 9.84 0.2441
mode 68 9.88 0.3583
mode 69 9.93 0.3346
mode 70 10.02 0.2765
mode 71 10.13 0.2800
mode 72 10.23 0.2346
mode 73 10.43 0.3519
mode 74 10.46 0.4662
mode 75 10.54 0.1622
mode 76 10.59 0.2420
mode 77 10.70 0.3841
mode 78 10.81 0.3573
mode 79 10.93 0.4167
mode 80 10.95 0.3312
mode 81 11.03 0.3452
mode 82 11.19 0.3103
mode 83 11.25 0.4292
mode 84 11.35 0.2616
mode 85 11.46 0.3243
mode 86 11.57 0.3589
mode 87 11.64 0.4720
mode 88 11.75 0.4026
mode 89 11.79 0.3539
mode 90 12.00 0.0259
mode 91 12.02 0.4715
mode 92 12.05 0.4628
mode 93 12.10 0.3779
mode 94 12.27 0.3129
mode 95 12.35 0.3676
mode 96 12.41 0.2865
mode 97 12.55 0.3295
mode 98 12.59 0.4253
mode 99 12.66 0.3316
mode 100 12.81 0.3756
mode 101 12.84 0.2684
mode 102 12.85 0.2729
mode 103 12.89 0.3604
mode 104 12.98 0.3292
mode 105 13.01 0.4544
mode 106 13.20 0.2926

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.