CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  7D9Z Crystal structure of anti-basigin Fab fragment  ***

Normal Mode Analysis for ID 2608161417401737521

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.7366
mode 8 1.56 0.7225
mode 9 2.45 0.7050
mode 10 2.60 0.6829
mode 11 2.75 0.7806
mode 12 3.30 0.6782
mode 13 3.40 0.4686
mode 14 3.66 0.6271
mode 15 3.79 0.0147
mode 16 3.94 0.1877
mode 17 4.46 0.4288
mode 18 4.59 0.4072
mode 19 4.84 0.4335
mode 20 5.08 0.2378
mode 21 5.15 0.2345
mode 22 5.26 0.3943
mode 23 5.49 0.2700
mode 24 5.62 0.5587
mode 25 5.75 0.5230
mode 26 5.80 0.5866
mode 27 6.04 0.5715
mode 28 6.24 0.4261
mode 29 6.32 0.0281
mode 30 6.39 0.2166
mode 31 6.46 0.3563
mode 32 6.62 0.4660
mode 33 6.68 0.4810
mode 34 6.77 0.2781
mode 35 6.82 0.4613
mode 36 6.98 0.4570
mode 37 7.08 0.4636
mode 38 7.22 0.4713
mode 39 7.40 0.4818
mode 40 7.52 0.2011
mode 41 7.64 0.4132
mode 42 7.74 0.1532
mode 43 7.79 0.1023
mode 44 7.88 0.3303
mode 45 7.91 0.3543
mode 46 8.01 0.2994
mode 47 8.10 0.2047
mode 48 8.24 0.3973
mode 49 8.25 0.3832
mode 50 8.30 0.2730
mode 51 8.43 0.2690
mode 52 8.48 0.5320
mode 53 8.54 0.4004
mode 54 8.74 0.5427
mode 55 8.77 0.3471
mode 56 8.85 0.3942
mode 57 8.98 0.4562
mode 58 9.07 0.2794
mode 59 9.17 0.2625
mode 60 9.27 0.4955
mode 61 9.34 0.2723
mode 62 9.38 0.3464
mode 63 9.47 0.2893
mode 64 9.53 0.4286
mode 65 9.59 0.3654
mode 66 9.69 0.4062
mode 67 9.71 0.4547
mode 68 9.78 0.2230
mode 69 9.83 0.4651
mode 70 9.92 0.3786
mode 71 9.96 0.2142
mode 72 10.04 0.3378
mode 73 10.06 0.2701
mode 74 10.11 0.3912
mode 75 10.14 0.4313
mode 76 10.18 0.2458
mode 77 10.24 0.4313
mode 78 10.31 0.3125
mode 79 10.37 0.4250
mode 80 10.44 0.2374
mode 81 10.47 0.5315
mode 82 10.55 0.4724
mode 83 10.56 0.3327
mode 84 10.63 0.3063
mode 85 10.67 0.4987
mode 86 10.71 0.3871
mode 87 10.77 0.3380
mode 88 10.84 0.4624
mode 89 10.93 0.3574
mode 90 10.98 0.2544
mode 91 11.04 0.4596
mode 92 11.08 0.3154
mode 93 11.10 0.4183
mode 94 11.15 0.5205
mode 95 11.22 0.4678
mode 96 11.28 0.4151
mode 97 11.35 0.4613
mode 98 11.41 0.1882
mode 99 11.47 0.3826
mode 100 11.49 0.3649
mode 101 11.53 0.4551
mode 102 11.61 0.4667
mode 103 11.66 0.3508
mode 104 11.70 0.4300
mode 105 11.75 0.3962
mode 106 11.77 0.5532

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.