CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J5L Structure of a Plasmodium falciparum apical membrane antigen 1-Fab F8. 12.19 complex  ***

<R2> analysis for 2608162332391822803

---  normal mode 10  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0589
ILE 4790.0212
PHE 4800.0215
ILE 4810.0223
SER 4820.0219
ASP 4830.0245
ASP 4840.0204
LYS 4850.0134
ASP 4860.0112
SER 4870.0137
LEU 4880.0122
LYS 4890.0087
CYS 4900.0104
PRO 4910.0105
CYS 4920.0104
ASP 4930.0084
PRO 4940.0104
GLU 4950.0139
MET 4960.0161
VAL 4970.0285
SER 4980.0355
GLN 4990.0475
SER 5000.0589
THR 5010.0588
CYS 5020.0485
ARG 5030.0346
PHE 5040.0278
PHE 5050.0180
VAL 5060.0171
CYS 5070.0156
LYS 5080.0185
CYS 5090.0164
VAL 5100.0188
GLU 5110.0181
ARG 5120.0230
SER 20.0243
VAL 30.0251
LEU 40.0239
SER 50.0242
GLN 60.0215
SER 70.0207
PRO 80.0170
ALA 90.0187
ILE 100.0179
LEU 110.0148
SER 120.0150
ALA 130.0144
SER 140.0167
PRO 150.0164
GLY 160.0188
GLU 170.0184
LYS 180.0171
VAL 190.0164
THR 200.0172
MET 210.0184
THR 220.0190
CYS 230.0214
ARG 240.0235
ALA 250.0243
ARG 260.0277
SER 270.0267
SER 290.0245
VAL 300.0218
SER 310.0199
TYR 320.0184
MET 330.0189
HIS 340.0174
TRP 350.0175
TYR 360.0173
GLN 370.0179
GLN 380.0170
LYS 390.0168
SER 400.0175
GLY 410.0161
SER 420.0170
SER 430.0169
PRO 440.0172
LYS 450.0168
PRO 460.0164
TRP 470.0167
ILE 480.0164
HIS 490.0151
ALA 500.0162
THR 510.0172
SER 520.0159
ASN 530.0151
LEU 540.0155
ALA 550.0146
SER 560.0157
GLY 570.0169
VAL 580.0175
PRO 590.0176
ALA 600.0182
ARG 610.0176
PHE 620.0169
SER 630.0163
GLY 640.0164
SER 650.0168
GLY 660.0192
SER 670.0204
GLY 680.0225
THR 690.0238
SER 700.0223
TYR 710.0198
SER 720.0192
LEU 730.0180
THR 740.0167
ILE 750.0168
SER 760.0173
ARG 770.0181
VAL 780.0165
GLU 790.0160
ALA 800.0139
GLU 810.0148
ASP 820.0149
ALA 830.0131
ALA 840.0156
THR 850.0178
TYR 860.0187
TYR 870.0190
CYS 880.0190
GLN 890.0193
GLN 900.0189
TRP 910.0170
SER 920.0190
SER 930.0200
HIS 940.0177
PRO 950.0172
PRO 960.0172
THR 970.0196
PHE 980.0198
GLY 990.0216
SER 1000.0230
GLY 1010.0201
THR 1020.0175
LYS 1030.0171
LEU 1040.0136
GLU 1050.0136
ILE 1060.0135
LYS 1070.0145
ARG 1080.0131
ALA 1090.0121
ASP 1100.0108
ALA 1110.0082
ALA 1120.0066
PRO 1130.0071
THR 1140.0059
VAL 1150.0073
SER 1160.0108
ILE 1170.0115
PHE 1180.0134
PRO 1190.0136
PRO 1200.0142
SER 1210.0153
SER 1220.0155
GLU 1230.0164
GLN 1240.0153
LEU 1250.0153
THR 1260.0162
SER 1270.0163
GLY 1280.0157
GLY 1290.0152
ALA 1300.0143
SER 1310.0138
VAL 1320.0131
VAL 1330.0134
CYS 1340.0110
PHE 1350.0110
LEU 1360.0095
ASN 1370.0063
ASN 1380.0060
PHE 1390.0073
TYR 1400.0103
PRO 1410.0121
LYS 1420.0125
ASP 1430.0134
ILE 1440.0114
ASN 1450.0128
VAL 1460.0112
LYS 1470.0108
TRP 1480.0113
LYS 1490.0099
ILE 1500.0102
ASP 1510.0094
GLY 1520.0078
SER 1530.0079
GLU 1540.0086
ARG 1550.0100
GLN 1560.0115
ASN 1570.0129
GLY 1580.0135
VAL 1590.0139
LEU 1600.0149
ASN 1610.0157
SER 1620.0153
TRP 1630.0130
THR 1640.0090
ASP 1650.0085
GLN 1660.0095
ASP 1670.0094
SER 1680.0119
LYS 1690.0125
ASP 1700.0104
SER 1710.0108
THR 1720.0088
TYR 1730.0081
SER 1740.0074
MET 1750.0103
SER 1760.0134
SER 1770.0131
THR 1780.0139
LEU 1790.0136
THR 1800.0141
LEU 1810.0135
THR 1820.0144
LYS 1830.0147
ASP 1840.0140
GLU 1850.0128
TYR 1860.0132
GLU 1870.0134
ARG 1880.0124
HIS 1890.0112
ASN 1900.0111
SER 1910.0102
TYR 1920.0108
THR 1930.0101
CYS 1940.0101
GLU 1950.0091
ALA 1960.0095
THR 1970.0099
HIS 1980.0094
LYS 1990.0102
THR 2000.0085
SER 2010.0067
THR 2020.0074
SER 2030.0063
PRO 2040.0074
ILE 2050.0067
VAL 2060.0076
LYS 2070.0088
SER 2080.0096
PHE 2090.0115
ASN 2100.0116
ARG 2110.0128
ASN 2120.0152
GLU 2130.0157
CYS 2140.0175
GLU 10.0117
VAL 20.0110
GLN 30.0122
LEU 40.0122
VAL 50.0137
GLU 60.0138
SER 70.0144
GLY 80.0146
GLY 90.0149
GLY 100.0140
LEU 110.0129
VAL 120.0146
LYS 130.0137
PRO 140.0161
GLY 150.0178
GLY 160.0155
SER 170.0147
LEU 180.0143
LYS 190.0135
LEU 200.0134
SER 210.0124
CYS 220.0120
ALA 230.0113
ALA 240.0095
SER 250.0089
GLY 260.0086
PHE 270.0065
ILE 280.0039
PHE 290.0048
SER 300.0030
ASP 310.0035
TYR 320.0051
TYR 330.0057
MET 340.0078
TYR 350.0099
TRP 360.0117
VAL 370.0128
ARG 380.0142
GLN 390.0162
THR 400.0167
PRO 410.0203
GLU 420.0214
LYS 430.0208
ARG 440.0190
LEU 450.0172
GLU 460.0152
TRP 470.0137
VAL 480.0125
ALA 490.0107
THR 500.0085
ILE 510.0060
SER 520.0047
ASP 520.0043
GLY 530.0071
ASN 540.0073
SER 550.0046
TYR 560.0043
THR 570.0058
TYR 580.0077
TYR 590.0099
VAL 600.0125
ASP 610.0112
SER 620.0128
VAL 630.0122
LYS 640.0103
GLY 650.0105
ARG 660.0124
PHE 670.0114
THR 680.0098
ILE 690.0088
SER 700.0072
ARG 710.0066
ASP 720.0076
ASN 730.0057
ALA 740.0078
LYS 750.0090
ASN 760.0074
ASN 770.0089
LEU 780.0090
TYR 790.0103
LEU 800.0112
GLN 810.0118
MET 820.0135
SER 820.0143
SER 820.0150
LEU 820.0147
LYS 830.0152
SER 840.0152
GLU 850.0141
ASP 860.0133
THR 870.0141
ALA 880.0148
ILE 890.0154
TYR 900.0140
TYR 910.0136
CYS 920.0118
ALA 930.0118
ARG 940.0102
ASP 950.0104
GLY 960.0110
PRO 970.0085
THR 980.0076
ASP 990.0100
SER 1000.0122
SER 1000.0114
GLY 1000.0118
TYR 1000.0145
GLY 1000.0145
GLY 1000.0148
PHE 1000.0139
GLY 1010.0128
TYR 1020.0126
TRP 1030.0143
GLY 1040.0140
GLN 1050.0163
GLY 1060.0159
THR 1070.0154
LEU 1080.0154
VAL 1090.0152
THR 1100.0148
VAL 1110.0153
SER 1120.0140
GLU 1130.0121
ALA 1140.0098
LYS 1150.0080
THR 1160.0082
THR 1170.0081
PRO 1180.0099
PRO 1190.0122
SER 1200.0132
VAL 1210.0166
TYR 1220.0161
PRO 1230.0169
LEU 1240.0166
ALA 1250.0176
PRO 1260.0169
GLY 1270.0160
SER 1280.0166
ALA 1290.0174
ALA 1300.0166
GLN 1330.0204
THR 1340.0218
ASN 1350.0199
SER 1360.0243
MET 1370.0233
VAL 1380.0211
THR 1390.0177
LEU 1400.0179
GLY 1410.0172
CYS 1420.0174
LEU 1430.0157
VAL 1440.0157
LYS 1450.0135
GLY 1460.0116
TYR 1470.0117
PHE 1480.0105
PRO 1490.0107
GLU 1500.0126
PRO 1510.0151
VAL 1520.0149
THR 1530.0179
VAL 1540.0205
THR 1560.0234
TRP 1570.0242
ASN 1620.0276
SER 1630.0284
GLY 1640.0296
SER 1650.0313
LEU 1660.0281
SER 1670.0272
SER 1680.0262
GLY 1690.0214
VAL 1710.0179
HIS 1720.0145
THR 1730.0173
PHE 1740.0152
PRO 1750.0162
ALA 1760.0155
VAL 1770.0151
LEU 1780.0134
GLN 1790.0132
SER 1800.0134
ASP 1830.0112
LEU 1840.0120
TYR 1850.0135
THR 1860.0147
LEU 1870.0157
SER 1880.0159
SER 1890.0164
SER 1900.0162
VAL 1910.0189
THR 1920.0213
VAL 1930.0247
PRO 1940.0269
SER 1950.0265
SER 1960.0307
PRO 1980.0300
ARG 1990.0273
PRO 2000.0273
SER 2020.0317
GLU 2030.0315
THR 2040.0286
VAL 2050.0252
THR 2060.0237
CYS 2080.0216
ASN 2090.0213
VAL 2100.0189
ALA 2110.0168
HIS 2120.0141
PRO 2130.0147
ALA 2140.0121
SER 2150.0098
SER 2160.0116
THR 2170.0134
LYS 2180.0167
VAL 2190.0172
ASP 2200.0208
LYS 2210.0199
LYS 2220.0219
ILE 2230.0214
VAL 2260.0225
PRO 2270.0221
ARG 2280.0202
ASP 2320.0212
CYS 2330.0200

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.