CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J5L Structure of a Plasmodium falciparum apical membrane antigen 1-Fab F8. 12.19 complex  ***

<R2> analysis for 2608162332391822803

---  normal mode 19  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0706
ILE 4790.0233
PHE 4800.0196
ILE 4810.0179
SER 4820.0198
ASP 4830.0188
ASP 4840.0196
LYS 4850.0123
ASP 4860.0128
SER 4870.0174
LEU 4880.0140
LYS 4890.0103
CYS 4900.0090
PRO 4910.0062
CYS 4920.0059
ASP 4930.0052
PRO 4940.0067
GLU 4950.0062
MET 4960.0055
VAL 4970.0086
SER 4980.0102
GLN 4990.0156
SER 5000.0195
THR 5010.0142
CYS 5020.0088
ARG 5030.0088
PHE 5040.0113
PHE 5050.0105
VAL 5060.0093
CYS 5070.0089
LYS 5080.0101
CYS 5090.0078
VAL 5100.0091
GLU 5110.0092
ARG 5120.0131
SER 20.0048
VAL 30.0070
LEU 40.0060
SER 50.0080
GLN 60.0082
SER 70.0116
PRO 80.0134
ALA 90.0132
ILE 100.0133
LEU 110.0130
SER 120.0139
ALA 130.0134
SER 140.0148
PRO 150.0124
GLY 160.0113
GLU 170.0128
LYS 180.0121
VAL 190.0127
THR 200.0108
MET 210.0095
THR 220.0094
CYS 230.0077
ARG 240.0092
ALA 250.0070
ARG 260.0094
SER 270.0073
SER 290.0056
VAL 300.0043
SER 310.0058
TYR 320.0049
MET 330.0041
HIS 340.0041
TRP 350.0029
TYR 360.0041
GLN 370.0043
GLN 380.0058
LYS 390.0046
SER 400.0039
GLY 410.0093
SER 420.0083
SER 430.0071
PRO 440.0062
LYS 450.0066
PRO 460.0060
TRP 470.0051
ILE 480.0050
HIS 490.0059
ALA 500.0069
THR 510.0061
SER 520.0076
ASN 530.0085
LEU 540.0081
ALA 550.0084
SER 560.0121
GLY 570.0107
VAL 580.0072
PRO 590.0043
ALA 600.0066
ARG 610.0066
PHE 620.0052
SER 630.0071
GLY 640.0071
SER 650.0091
GLY 660.0100
SER 670.0102
GLY 680.0095
THR 690.0094
SER 700.0106
TYR 710.0080
SER 720.0078
LEU 730.0064
THR 740.0089
ILE 750.0083
SER 760.0100
ARG 770.0095
VAL 780.0098
GLU 790.0098
ALA 800.0125
GLU 810.0105
ASP 820.0084
ALA 830.0092
ALA 840.0072
THR 850.0058
TYR 860.0035
TYR 870.0031
CYS 880.0016
GLN 890.0047
GLN 900.0047
TRP 910.0052
SER 920.0063
SER 930.0073
HIS 940.0072
PRO 950.0073
PRO 960.0059
THR 970.0052
PHE 980.0035
GLY 990.0031
SER 1000.0047
GLY 1010.0062
THR 1020.0075
LYS 1030.0087
LEU 1040.0101
GLU 1050.0116
ILE 1060.0124
LYS 1070.0151
ARG 1080.0165
ALA 1090.0198
ASP 1100.0197
ALA 1110.0172
ALA 1120.0153
PRO 1130.0112
THR 1140.0129
VAL 1150.0118
SER 1160.0109
ILE 1170.0091
PHE 1180.0090
PRO 1190.0118
PRO 1200.0099
SER 1210.0119
SER 1220.0178
GLU 1230.0180
GLN 1240.0144
LEU 1250.0162
THR 1260.0236
SER 1270.0228
GLY 1280.0151
GLY 1290.0115
ALA 1300.0057
SER 1310.0064
VAL 1320.0083
VAL 1330.0087
CYS 1340.0106
PHE 1350.0107
LEU 1360.0103
ASN 1370.0108
ASN 1380.0105
PHE 1390.0091
TYR 1400.0123
PRO 1410.0128
LYS 1420.0114
ASP 1430.0154
ILE 1440.0115
ASN 1450.0114
VAL 1460.0057
LYS 1470.0099
TRP 1480.0140
LYS 1490.0218
ILE 1500.0254
ASP 1510.0322
GLY 1520.0385
SER 1530.0329
GLU 1540.0322
ARG 1550.0238
GLN 1560.0194
ASN 1570.0161
GLY 1580.0076
VAL 1590.0075
LEU 1600.0074
ASN 1610.0133
SER 1620.0131
TRP 1630.0122
THR 1640.0125
ASP 1650.0104
GLN 1660.0102
ASP 1670.0118
SER 1680.0145
LYS 1690.0189
ASP 1700.0172
SER 1710.0137
THR 1720.0107
TYR 1730.0090
SER 1740.0103
MET 1750.0115
SER 1760.0105
SER 1770.0096
THR 1780.0083
LEU 1790.0054
THR 1800.0030
LEU 1810.0062
THR 1820.0064
LYS 1830.0053
ASP 1840.0100
GLU 1850.0151
TYR 1860.0140
GLU 1870.0196
ARG 1880.0253
HIS 1890.0278
ASN 1900.0312
SER 1910.0298
TYR 1920.0226
THR 1930.0202
CYS 1940.0129
GLU 1950.0100
ALA 1960.0072
THR 1970.0111
HIS 1980.0138
LYS 1990.0218
THR 2000.0235
SER 2010.0230
THR 2020.0313
SER 2030.0131
PRO 2040.0084
ILE 2050.0073
VAL 2060.0096
LYS 2070.0138
SER 2080.0192
PHE 2090.0255
ASN 2100.0294
ARG 2110.0273
ASN 2120.0272
GLU 2130.0297
CYS 2140.0308
GLU 10.0115
VAL 20.0090
GLN 30.0076
LEU 40.0054
VAL 50.0052
GLU 60.0050
SER 70.0051
GLY 80.0061
GLY 90.0076
GLY 100.0091
LEU 110.0082
VAL 120.0089
LYS 130.0081
PRO 140.0139
GLY 150.0168
GLY 160.0123
SER 170.0112
LEU 180.0093
LYS 190.0080
LEU 200.0063
SER 210.0044
CYS 220.0032
ALA 230.0026
ALA 240.0032
SER 250.0040
GLY 260.0062
PHE 270.0063
ILE 280.0059
PHE 290.0040
SER 300.0048
ASP 310.0043
TYR 320.0034
TYR 330.0027
MET 340.0028
TYR 350.0036
TRP 360.0045
VAL 370.0035
ARG 380.0045
GLN 390.0060
THR 400.0076
PRO 410.0100
GLU 420.0101
LYS 430.0056
ARG 440.0036
LEU 450.0027
GLU 460.0050
TRP 470.0042
VAL 480.0039
ALA 490.0042
THR 500.0027
ILE 510.0015
SER 520.0019
ASP 520.0030
GLY 530.0055
ASN 540.0051
SER 550.0038
TYR 560.0019
THR 570.0018
TYR 580.0025
TYR 590.0048
VAL 600.0071
ASP 610.0105
SER 620.0127
VAL 630.0111
LYS 640.0111
GLY 650.0127
ARG 660.0132
PHE 670.0093
THR 680.0079
ILE 690.0053
SER 700.0046
ARG 710.0040
ASP 720.0056
ASN 730.0054
ALA 740.0079
LYS 750.0061
ASN 760.0035
ASN 770.0028
LEU 780.0027
TYR 790.0049
LEU 800.0063
GLN 810.0083
MET 820.0112
SER 820.0134
SER 820.0151
LEU 820.0133
LYS 830.0153
SER 840.0146
GLU 850.0138
ASP 860.0109
THR 870.0097
ALA 880.0081
ILE 890.0070
TYR 900.0053
TYR 910.0051
CYS 920.0046
ALA 930.0049
ARG 940.0059
ASP 950.0064
GLY 960.0076
PRO 970.0084
THR 980.0085
ASP 990.0084
SER 1000.0079
SER 1000.0074
GLY 1000.0069
TYR 1000.0062
GLY 1000.0057
GLY 1000.0061
PHE 1000.0065
GLY 1010.0072
TYR 1020.0077
TRP 1030.0065
GLY 1040.0063
GLN 1050.0073
GLY 1060.0061
THR 1070.0063
LEU 1080.0084
VAL 1090.0087
THR 1100.0096
VAL 1110.0110
SER 1120.0135
GLU 1130.0148
ALA 1140.0213
LYS 1150.0290
THR 1160.0213
THR 1170.0261
PRO 1180.0229
PRO 1190.0137
SER 1200.0150
VAL 1210.0076
TYR 1220.0076
PRO 1230.0060
LEU 1240.0069
ALA 1250.0068
PRO 1260.0074
GLY 1270.0187
SER 1280.0245
ALA 1290.0111
ALA 1300.0253
GLN 1330.0602
THR 1340.0706
ASN 1350.0628
SER 1360.0516
MET 1370.0313
VAL 1380.0229
THR 1390.0059
LEU 1400.0042
GLY 1410.0078
CYS 1420.0063
LEU 1430.0075
VAL 1440.0070
LYS 1450.0111
GLY 1460.0187
TYR 1470.0150
PHE 1480.0114
PRO 1490.0055
GLU 1500.0126
PRO 1510.0200
VAL 1520.0164
THR 1530.0223
VAL 1540.0150
THR 1560.0187
TRP 1570.0160
ASN 1620.0244
SER 1630.0291
GLY 1640.0317
SER 1650.0347
LEU 1660.0258
SER 1670.0267
SER 1680.0266
GLY 1690.0173
VAL 1710.0111
HIS 1720.0135
THR 1730.0149
PHE 1740.0166
PRO 1750.0205
ALA 1760.0215
VAL 1770.0249
LEU 1780.0319
GLN 1790.0397
SER 1800.0560
ASP 1830.0379
LEU 1840.0280
TYR 1850.0192
THR 1860.0154
LEU 1870.0129
SER 1880.0121
SER 1890.0121
SER 1900.0089
VAL 1910.0069
THR 1920.0018
VAL 1930.0191
PRO 1940.0354
SER 1950.0526
SER 1960.0681
PRO 1980.0541
ARG 1990.0424
PRO 2000.0401
SER 2020.0548
GLU 2030.0491
THR 2040.0354
VAL 2050.0143
THR 2060.0140
CYS 2080.0101
ASN 2090.0152
VAL 2100.0133
ALA 2110.0233
HIS 2120.0192
PRO 2130.0304
ALA 2140.0254
SER 2150.0316
SER 2160.0387
THR 2170.0276
LYS 2180.0269
VAL 2190.0204
ASP 2200.0122
LYS 2210.0075
LYS 2220.0080
ILE 2230.0062
VAL 2260.0107
PRO 2270.0166
ARG 2280.0187
ASP 2320.0337
CYS 2330.0298

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.