CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J5L Structure of a Plasmodium falciparum apical membrane antigen 1-Fab F8. 12.19 complex  ***

<R2> analysis for 2608162332391822803

---  normal mode 21  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0664
ILE 4790.0664
PHE 4800.0546
ILE 4810.0521
SER 4820.0554
ASP 4830.0536
ASP 4840.0559
LYS 4850.0296
ASP 4860.0353
SER 4870.0471
LEU 4880.0363
LYS 4890.0244
CYS 4900.0159
PRO 4910.0077
CYS 4920.0079
ASP 4930.0070
PRO 4940.0106
GLU 4950.0142
MET 4960.0084
VAL 4970.0324
SER 4980.0298
GLN 4990.0511
SER 5000.0601
THR 5010.0435
CYS 5020.0216
ARG 5030.0192
PHE 5040.0303
PHE 5050.0265
VAL 5060.0248
CYS 5070.0187
LYS 5080.0196
CYS 5090.0091
VAL 5100.0099
GLU 5110.0099
ARG 5120.0184
SER 20.0115
VAL 30.0082
LEU 40.0047
SER 50.0045
GLN 60.0077
SER 70.0126
PRO 80.0160
ALA 90.0153
ILE 100.0183
LEU 110.0168
SER 120.0174
ALA 130.0179
SER 140.0195
PRO 150.0223
GLY 160.0228
GLU 170.0228
LYS 180.0216
VAL 190.0192
THR 200.0187
MET 210.0149
THR 220.0134
CYS 230.0097
ARG 240.0109
ALA 250.0110
ARG 260.0150
SER 270.0155
SER 290.0151
VAL 300.0112
SER 310.0102
TYR 320.0048
MET 330.0040
HIS 340.0023
TRP 350.0036
TYR 360.0027
GLN 370.0055
GLN 380.0060
LYS 390.0079
SER 400.0087
GLY 410.0099
SER 420.0065
SER 430.0036
PRO 440.0029
LYS 450.0030
PRO 460.0016
TRP 470.0037
ILE 480.0040
HIS 490.0047
ALA 500.0061
THR 510.0068
SER 520.0084
ASN 530.0081
LEU 540.0064
ALA 550.0026
SER 560.0021
GLY 570.0069
VAL 580.0089
PRO 590.0172
ALA 600.0189
ARG 610.0206
PHE 620.0162
SER 630.0159
GLY 640.0143
SER 650.0160
GLY 660.0160
SER 670.0167
GLY 680.0179
THR 690.0150
SER 700.0151
TYR 710.0125
SER 720.0127
LEU 730.0129
THR 740.0183
ILE 750.0201
SER 760.0231
ARG 770.0227
VAL 780.0206
GLU 790.0218
ALA 800.0158
GLU 810.0171
ASP 820.0161
ALA 830.0143
ALA 840.0115
THR 850.0095
TYR 860.0069
TYR 870.0037
CYS 880.0039
GLN 890.0043
GLN 900.0053
TRP 910.0068
SER 920.0079
SER 930.0096
HIS 940.0101
PRO 950.0103
PRO 960.0079
THR 970.0067
PHE 980.0031
GLY 990.0017
SER 1000.0025
GLY 1010.0081
THR 1020.0113
LYS 1030.0132
LEU 1040.0148
GLU 1050.0145
ILE 1060.0147
LYS 1070.0168
ARG 1080.0192
ALA 1090.0226
ASP 1100.0228
ALA 1110.0222
ALA 1120.0214
PRO 1130.0116
THR 1140.0085
VAL 1150.0052
SER 1160.0039
ILE 1170.0033
PHE 1180.0037
PRO 1190.0055
PRO 1200.0095
SER 1210.0119
SER 1220.0236
GLU 1230.0220
GLN 1240.0205
LEU 1250.0282
THR 1260.0377
SER 1270.0403
GLY 1280.0370
GLY 1290.0295
ALA 1300.0196
SER 1310.0117
VAL 1320.0061
VAL 1330.0039
CYS 1340.0027
PHE 1350.0028
LEU 1360.0044
ASN 1370.0068
ASN 1380.0110
PHE 1390.0127
TYR 1400.0154
PRO 1410.0144
LYS 1420.0119
ASP 1430.0132
ILE 1440.0109
ASN 1450.0111
VAL 1460.0065
LYS 1470.0091
TRP 1480.0095
LYS 1490.0129
ILE 1500.0108
ASP 1510.0130
GLY 1520.0213
SER 1530.0216
GLU 1540.0227
ARG 1550.0199
GLN 1560.0187
ASN 1570.0243
GLY 1580.0180
VAL 1590.0112
LEU 1600.0072
ASN 1610.0026
SER 1620.0042
TRP 1630.0048
THR 1640.0088
ASP 1650.0095
GLN 1660.0098
ASP 1670.0155
SER 1680.0164
LYS 1690.0175
ASP 1700.0178
SER 1710.0136
THR 1720.0131
TYR 1730.0075
SER 1740.0074
MET 1750.0068
SER 1760.0032
SER 1770.0033
THR 1780.0043
LEU 1790.0118
THR 1800.0164
LEU 1810.0191
THR 1820.0294
LYS 1830.0268
ASP 1840.0250
GLU 1850.0181
TYR 1860.0136
GLU 1870.0132
ARG 1880.0079
HIS 1890.0037
ASN 1900.0081
SER 1910.0093
TYR 1920.0058
THR 1930.0090
CYS 1940.0069
GLU 1950.0082
ALA 1960.0069
THR 1970.0144
HIS 1980.0163
LYS 1990.0224
THR 2000.0285
SER 2010.0312
THR 2020.0388
SER 2030.0180
PRO 2040.0126
ILE 2050.0113
VAL 2060.0074
LYS 2070.0062
SER 2080.0078
PHE 2090.0088
ASN 2100.0103
ARG 2110.0103
ASN 2120.0177
GLU 2130.0132
CYS 2140.0138
GLU 10.0182
VAL 20.0146
GLN 30.0131
LEU 40.0101
VAL 50.0100
GLU 60.0088
SER 70.0094
GLY 80.0092
GLY 90.0080
GLY 100.0127
LEU 110.0123
VAL 120.0111
LYS 130.0110
PRO 140.0066
GLY 150.0045
GLY 160.0056
SER 170.0069
LEU 180.0078
LYS 190.0058
LEU 200.0060
SER 210.0062
CYS 220.0073
ALA 230.0077
ALA 240.0080
SER 250.0092
GLY 260.0113
PHE 270.0099
ILE 280.0053
PHE 290.0040
SER 300.0039
ASP 310.0049
TYR 320.0044
TYR 330.0035
MET 340.0065
TYR 350.0063
TRP 360.0058
VAL 370.0058
ARG 380.0044
GLN 390.0029
THR 400.0022
PRO 410.0040
GLU 420.0034
LYS 430.0023
ARG 440.0005
LEU 450.0020
GLU 460.0049
TRP 470.0063
VAL 480.0068
ALA 490.0076
THR 500.0064
ILE 510.0056
SER 520.0079
ASP 520.0116
GLY 530.0204
ASN 540.0224
SER 550.0147
TYR 560.0104
THR 570.0070
TYR 580.0068
TYR 590.0078
VAL 600.0091
ASP 610.0103
SER 620.0095
VAL 630.0091
LYS 640.0102
GLY 650.0111
ARG 660.0093
PHE 670.0075
THR 680.0071
ILE 690.0058
SER 700.0030
ARG 710.0031
ASP 720.0034
ASN 730.0026
ALA 740.0040
LYS 750.0036
ASN 760.0035
ASN 770.0039
LEU 780.0041
TYR 790.0050
LEU 800.0057
GLN 810.0065
MET 820.0075
SER 820.0073
SER 820.0061
LEU 820.0046
LYS 830.0051
SER 840.0056
GLU 850.0053
ASP 860.0038
THR 870.0054
ALA 880.0045
ILE 890.0056
TYR 900.0062
TYR 910.0062
CYS 920.0075
ALA 930.0079
ARG 940.0082
ASP 950.0095
GLY 960.0113
PRO 970.0130
THR 980.0139
ASP 990.0149
SER 1000.0125
SER 1000.0115
GLY 1000.0109
TYR 1000.0102
GLY 1000.0087
GLY 1000.0087
PHE 1000.0083
GLY 1010.0097
TYR 1020.0096
TRP 1030.0080
GLY 1040.0085
GLN 1050.0086
GLY 1060.0091
THR 1070.0091
LEU 1080.0085
VAL 1090.0094
THR 1100.0098
VAL 1110.0087
SER 1120.0120
GLU 1130.0136
ALA 1140.0152
LYS 1150.0152
THR 1160.0142
THR 1170.0124
PRO 1180.0074
PRO 1190.0069
SER 1200.0064
VAL 1210.0036
TYR 1220.0055
PRO 1230.0028
LEU 1240.0032
ALA 1250.0045
PRO 1260.0072
GLY 1270.0102
SER 1280.0177
ALA 1290.0217
ALA 1300.0227
GLN 1330.0353
THR 1340.0394
ASN 1350.0407
SER 1360.0406
MET 1370.0302
VAL 1380.0208
THR 1390.0084
LEU 1400.0052
GLY 1410.0029
CYS 1420.0023
LEU 1430.0054
VAL 1440.0061
LYS 1450.0099
GLY 1460.0122
TYR 1470.0123
PHE 1480.0157
PRO 1490.0178
GLU 1500.0193
PRO 1510.0205
VAL 1520.0159
THR 1530.0177
VAL 1540.0117
THR 1560.0158
TRP 1570.0132
ASN 1620.0175
SER 1630.0244
GLY 1640.0267
SER 1650.0209
LEU 1660.0171
SER 1670.0224
SER 1680.0233
GLY 1690.0200
VAL 1710.0072
HIS 1720.0065
THR 1730.0057
PHE 1740.0078
PRO 1750.0114
ALA 1760.0137
VAL 1770.0164
LEU 1780.0209
GLN 1790.0220
SER 1800.0308
ASP 1830.0243
LEU 1840.0191
TYR 1850.0168
THR 1860.0110
LEU 1870.0088
SER 1880.0058
SER 1890.0045
SER 1900.0063
VAL 1910.0077
THR 1920.0139
VAL 1930.0172
PRO 1940.0250
SER 1950.0251
SER 1960.0220
PRO 1980.0108
ARG 1990.0095
PRO 2000.0107
SER 2020.0088
GLU 2030.0064
THR 2040.0107
VAL 2050.0076
THR 2060.0104
CYS 2080.0097
ASN 2090.0137
VAL 2100.0115
ALA 2110.0157
HIS 2120.0137
PRO 2130.0174
ALA 2140.0162
SER 2150.0098
SER 2160.0129
THR 2170.0103
LYS 2180.0164
VAL 2190.0136
ASP 2200.0135
LYS 2210.0087
LYS 2220.0093
ILE 2230.0045
VAL 2260.0065
PRO 2270.0061
ARG 2280.0052
ASP 2320.0158
CYS 2330.0080

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.