CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J5L Structure of a Plasmodium falciparum apical membrane antigen 1-Fab F8. 12.19 complex  ***

<R2> analysis for 2608162332391822803

---  normal mode 31  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1363
ILE 4790.0244
PHE 4800.0170
ILE 4810.0192
SER 4820.0171
ASP 4830.0166
ASP 4840.0162
LYS 4850.0105
ASP 4860.0092
SER 4870.0148
LEU 4880.0107
LYS 4890.0097
CYS 4900.0073
PRO 4910.0063
CYS 4920.0057
ASP 4930.0048
PRO 4940.0081
GLU 4950.0081
MET 4960.0085
VAL 4970.0252
SER 4980.0218
GLN 4990.0230
SER 5000.0390
THR 5010.0356
CYS 5020.0143
ARG 5030.0152
PHE 5040.0155
PHE 5050.0156
VAL 5060.0112
CYS 5070.0080
LYS 5080.0053
CYS 5090.0041
VAL 5100.0054
GLU 5110.0071
ARG 5120.0121
SER 20.0154
VAL 30.0144
LEU 40.0099
SER 50.0108
GLN 60.0104
SER 70.0139
PRO 80.0105
ALA 90.0128
ILE 100.0131
LEU 110.0114
SER 120.0080
ALA 130.0069
SER 140.0121
PRO 150.0112
GLY 160.0081
GLU 170.0021
LYS 180.0069
VAL 190.0094
THR 200.0127
MET 210.0115
THR 220.0095
CYS 230.0108
ARG 240.0142
ALA 250.0153
ARG 260.0333
SER 270.0272
SER 290.0217
VAL 300.0152
SER 310.0142
TYR 320.0052
MET 330.0012
HIS 340.0034
TRP 350.0056
TYR 360.0071
GLN 370.0094
GLN 380.0090
LYS 390.0114
SER 400.0130
GLY 410.0134
SER 420.0099
SER 430.0055
PRO 440.0068
LYS 450.0085
PRO 460.0075
TRP 470.0080
ILE 480.0057
HIS 490.0045
ALA 500.0048
THR 510.0021
SER 520.0041
ASN 530.0045
LEU 540.0071
ALA 550.0081
SER 560.0128
GLY 570.0135
VAL 580.0108
PRO 590.0102
ALA 600.0123
ARG 610.0116
PHE 620.0103
SER 630.0094
GLY 640.0083
SER 650.0021
GLY 660.0055
SER 670.0101
GLY 680.0154
THR 690.0161
SER 700.0114
TYR 710.0063
SER 720.0077
LEU 730.0093
THR 740.0122
ILE 750.0111
SER 760.0111
ARG 770.0067
VAL 780.0041
GLU 790.0070
ALA 800.0073
GLU 810.0078
ASP 820.0039
ALA 830.0052
ALA 840.0085
THR 850.0111
TYR 860.0092
TYR 870.0077
CYS 880.0063
GLN 890.0030
GLN 900.0033
TRP 910.0057
SER 920.0062
SER 930.0061
HIS 940.0062
PRO 950.0068
PRO 960.0056
THR 970.0031
PHE 980.0032
GLY 990.0061
SER 1000.0079
GLY 1010.0120
THR 1020.0111
LYS 1030.0113
LEU 1040.0075
GLU 1050.0043
ILE 1060.0076
LYS 1070.0215
ARG 1080.0290
ALA 1090.0389
ASP 1100.0275
ALA 1110.0201
ALA 1120.0140
PRO 1130.0128
THR 1140.0127
VAL 1150.0164
SER 1160.0165
ILE 1170.0148
PHE 1180.0132
PRO 1190.0055
PRO 1200.0081
SER 1210.0113
SER 1220.0184
GLU 1230.0192
GLN 1240.0149
LEU 1250.0207
THR 1260.0275
SER 1270.0246
GLY 1280.0245
GLY 1290.0178
ALA 1300.0127
SER 1310.0099
VAL 1320.0092
VAL 1330.0128
CYS 1340.0135
PHE 1350.0119
LEU 1360.0126
ASN 1370.0098
ASN 1380.0127
PHE 1390.0162
TYR 1400.0214
PRO 1410.0230
LYS 1420.0185
ASP 1430.0171
ILE 1440.0130
ASN 1450.0124
VAL 1460.0109
LYS 1470.0086
TRP 1480.0076
LYS 1490.0086
ILE 1500.0093
ASP 1510.0154
GLY 1520.0224
SER 1530.0201
GLU 1540.0187
ARG 1550.0110
GLN 1560.0089
ASN 1570.0075
GLY 1580.0111
VAL 1590.0100
LEU 1600.0103
ASN 1610.0140
SER 1620.0114
TRP 1630.0087
THR 1640.0074
ASP 1650.0060
GLN 1660.0036
ASP 1670.0108
SER 1680.0177
LYS 1690.0335
ASP 1700.0272
SER 1710.0191
THR 1720.0166
TYR 1730.0099
SER 1740.0078
MET 1750.0095
SER 1760.0123
SER 1770.0124
THR 1780.0121
LEU 1790.0081
THR 1800.0082
LEU 1810.0104
THR 1820.0238
LYS 1830.0260
ASP 1840.0306
GLU 1850.0258
TYR 1860.0184
GLU 1870.0230
ARG 1880.0260
HIS 1890.0193
ASN 1900.0113
SER 1910.0062
TYR 1920.0042
THR 1930.0094
CYS 1940.0135
GLU 1950.0121
ALA 1960.0119
THR 1970.0183
HIS 1980.0151
LYS 1990.0207
THR 2000.0175
SER 2010.0463
THR 2020.0767
SER 2030.0491
PRO 2040.0278
ILE 2050.0295
VAL 2060.0172
LYS 2070.0180
SER 2080.0162
PHE 2090.0093
ASN 2100.0047
ARG 2110.0055
ASN 2120.0133
GLU 2130.0170
CYS 2140.0274
GLU 10.0158
VAL 20.0113
GLN 30.0104
LEU 40.0077
VAL 50.0096
GLU 60.0084
SER 70.0125
GLY 80.0143
GLY 90.0120
GLY 100.0101
LEU 110.0103
VAL 120.0113
LYS 130.0166
PRO 140.0142
GLY 150.0198
GLY 160.0215
SER 170.0188
LEU 180.0158
LYS 190.0131
LEU 200.0100
SER 210.0102
CYS 220.0084
ALA 230.0090
ALA 240.0069
SER 250.0063
GLY 260.0075
PHE 270.0075
ILE 280.0084
PHE 290.0070
SER 300.0097
ASP 310.0082
TYR 320.0070
TYR 330.0066
MET 340.0066
TYR 350.0069
TRP 360.0063
VAL 370.0074
ARG 380.0060
GLN 390.0059
THR 400.0081
PRO 410.0108
GLU 420.0118
LYS 430.0065
ARG 440.0064
LEU 450.0048
GLU 460.0080
TRP 470.0087
VAL 480.0078
ALA 490.0075
THR 500.0076
ILE 510.0067
SER 520.0055
ASP 520.0056
GLY 530.0051
ASN 540.0063
SER 550.0040
TYR 560.0041
THR 570.0072
TYR 580.0081
TYR 590.0097
VAL 600.0127
ASP 610.0204
SER 620.0187
VAL 630.0148
LYS 640.0200
GLY 650.0221
ARG 660.0187
PHE 670.0118
THR 680.0107
ILE 690.0068
SER 700.0086
ARG 710.0083
ASP 720.0105
ASN 730.0105
ALA 740.0126
LYS 750.0114
ASN 760.0072
ASN 770.0082
LEU 780.0070
TYR 790.0077
LEU 800.0075
GLN 810.0120
MET 820.0134
SER 820.0191
SER 820.0205
LEU 820.0142
LYS 830.0126
SER 840.0076
GLU 850.0079
ASP 860.0061
THR 870.0059
ALA 880.0067
ILE 890.0079
TYR 900.0066
TYR 910.0065
CYS 920.0062
ALA 930.0074
ARG 940.0079
ASP 950.0077
GLY 960.0077
PRO 970.0068
THR 980.0051
ASP 990.0044
SER 1000.0056
SER 1000.0062
GLY 1000.0065
TYR 1000.0062
GLY 1000.0068
GLY 1000.0066
PHE 1000.0071
GLY 1010.0069
TYR 1020.0075
TRP 1030.0069
GLY 1040.0056
GLN 1050.0075
GLY 1060.0101
THR 1070.0096
LEU 1080.0099
VAL 1090.0078
THR 1100.0077
VAL 1110.0075
SER 1120.0072
GLU 1130.0121
ALA 1140.0137
LYS 1150.0144
THR 1160.0063
THR 1170.0073
PRO 1180.0068
PRO 1190.0059
SER 1200.0066
VAL 1210.0127
TYR 1220.0122
PRO 1230.0128
LEU 1240.0122
ALA 1250.0105
PRO 1260.0091
GLY 1270.0063
SER 1280.0146
ALA 1290.0306
ALA 1300.0176
GLN 1330.0230
THR 1340.0196
ASN 1350.0099
SER 1360.0175
MET 1370.0150
VAL 1380.0132
THR 1390.0104
LEU 1400.0104
GLY 1410.0106
CYS 1420.0095
LEU 1430.0095
VAL 1440.0083
LYS 1450.0057
GLY 1460.0037
TYR 1470.0042
PHE 1480.0071
PRO 1490.0064
GLU 1500.0095
PRO 1510.0075
VAL 1520.0088
THR 1530.0094
VAL 1540.0065
THR 1560.0124
TRP 1570.0116
ASN 1620.0211
SER 1630.0308
GLY 1640.0314
SER 1650.0254
LEU 1660.0176
SER 1670.0269
SER 1680.0293
GLY 1690.0215
VAL 1710.0087
HIS 1720.0037
THR 1730.0068
PHE 1740.0104
PRO 1750.0160
ALA 1760.0175
VAL 1770.0208
LEU 1780.0268
GLN 1790.0337
SER 1800.0510
ASP 1830.0219
LEU 1840.0146
TYR 1850.0113
THR 1860.0072
LEU 1870.0080
SER 1880.0086
SER 1890.0060
SER 1900.0045
VAL 1910.0031
THR 1920.0099
VAL 1930.0114
PRO 1940.0172
SER 1950.0199
SER 1960.0201
PRO 1980.0032
ARG 1990.0108
PRO 2000.0194
SER 2020.0195
GLU 2030.0166
THR 2040.0192
VAL 2050.0113
THR 2060.0141
CYS 2080.0087
ASN 2090.0118
VAL 2100.0078
ALA 2110.0109
HIS 2120.0081
PRO 2130.0075
ALA 2140.0047
SER 2150.0055
SER 2160.0093
THR 2170.0118
LYS 2180.0134
VAL 2190.0141
ASP 2200.0127
LYS 2210.0112
LYS 2220.0129
ILE 2230.0140
VAL 2260.0132
PRO 2270.0118
ARG 2280.0089
ASP 2320.0556
CYS 2330.1363

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.