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***  2J5L Structure of a Plasmodium falciparum apical membrane antigen 1-Fab F8. 12.19 complex  ***

<R2> analysis for 2608162332391822803

---  normal mode 34  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0808
ILE 4790.0268
PHE 4800.0217
ILE 4810.0191
SER 4820.0169
ASP 4830.0149
ASP 4840.0194
LYS 4850.0141
ASP 4860.0162
SER 4870.0219
LEU 4880.0181
LYS 4890.0129
CYS 4900.0114
PRO 4910.0101
CYS 4920.0102
ASP 4930.0092
PRO 4940.0111
GLU 4950.0155
MET 4960.0211
VAL 4970.0447
SER 4980.0336
GLN 4990.0487
SER 5000.0383
THR 5010.0808
CYS 5020.0497
ARG 5030.0050
PHE 5040.0096
PHE 5050.0202
VAL 5060.0153
CYS 5070.0095
LYS 5080.0083
CYS 5090.0041
VAL 5100.0082
GLU 5110.0125
ARG 5120.0411
SER 20.0228
VAL 30.0217
LEU 40.0099
SER 50.0033
GLN 60.0034
SER 70.0065
PRO 80.0089
ALA 90.0087
ILE 100.0074
LEU 110.0057
SER 120.0044
ALA 130.0051
SER 140.0077
PRO 150.0096
GLY 160.0105
GLU 170.0083
LYS 180.0062
VAL 190.0053
THR 200.0087
MET 210.0073
THR 220.0064
CYS 230.0051
ARG 240.0113
ALA 250.0167
ARG 260.0354
SER 270.0307
SER 290.0212
VAL 300.0126
SER 310.0104
TYR 320.0021
MET 330.0031
HIS 340.0064
TRP 350.0061
TYR 360.0057
GLN 370.0046
GLN 380.0050
LYS 390.0094
SER 400.0170
GLY 410.0220
SER 420.0147
SER 430.0084
PRO 440.0051
LYS 450.0041
PRO 460.0066
TRP 470.0064
ILE 480.0067
HIS 490.0077
ALA 500.0051
THR 510.0051
SER 520.0071
ASN 530.0076
LEU 540.0082
ALA 550.0082
SER 560.0119
GLY 570.0119
VAL 580.0088
PRO 590.0059
ALA 600.0046
ARG 610.0036
PHE 620.0072
SER 630.0067
GLY 640.0062
SER 650.0129
GLY 660.0127
SER 670.0160
GLY 680.0235
THR 690.0205
SER 700.0165
TYR 710.0066
SER 720.0067
LEU 730.0084
THR 740.0064
ILE 750.0056
SER 760.0051
ARG 770.0074
VAL 780.0065
GLU 790.0081
ALA 800.0073
GLU 810.0077
ASP 820.0043
ALA 830.0028
ALA 840.0040
THR 850.0061
TYR 860.0049
TYR 870.0051
CYS 880.0062
GLN 890.0079
GLN 900.0057
TRP 910.0065
SER 920.0033
SER 930.0089
HIS 940.0118
PRO 950.0120
PRO 960.0109
THR 970.0116
PHE 980.0081
GLY 990.0072
SER 1000.0061
GLY 1010.0076
THR 1020.0062
LYS 1030.0050
LEU 1040.0034
GLU 1050.0047
ILE 1060.0059
LYS 1070.0070
ARG 1080.0079
ALA 1090.0091
ASP 1100.0098
ALA 1110.0061
ALA 1120.0043
PRO 1130.0051
THR 1140.0045
VAL 1150.0088
SER 1160.0110
ILE 1170.0118
PHE 1180.0123
PRO 1190.0114
PRO 1200.0095
SER 1210.0072
SER 1220.0067
GLU 1230.0053
GLN 1240.0064
LEU 1250.0109
THR 1260.0133
SER 1270.0127
GLY 1280.0084
GLY 1290.0081
ALA 1300.0064
SER 1310.0089
VAL 1320.0100
VAL 1330.0120
CYS 1340.0125
PHE 1350.0106
LEU 1360.0094
ASN 1370.0064
ASN 1380.0043
PHE 1390.0050
TYR 1400.0082
PRO 1410.0094
LYS 1420.0098
ASP 1430.0119
ILE 1440.0094
ASN 1450.0124
VAL 1460.0114
LYS 1470.0091
TRP 1480.0082
LYS 1490.0050
ILE 1500.0073
ASP 1510.0123
GLY 1520.0133
SER 1530.0067
GLU 1540.0098
ARG 1550.0065
GLN 1560.0079
ASN 1570.0119
GLY 1580.0042
VAL 1590.0092
LEU 1600.0119
ASN 1610.0135
SER 1620.0110
TRP 1630.0086
THR 1640.0075
ASP 1650.0093
GLN 1660.0076
ASP 1670.0107
SER 1680.0121
LYS 1690.0146
ASP 1700.0097
SER 1710.0091
THR 1720.0068
TYR 1730.0061
SER 1740.0060
MET 1750.0087
SER 1760.0113
SER 1770.0114
THR 1780.0115
LEU 1790.0076
THR 1800.0056
LEU 1810.0013
THR 1820.0044
LYS 1830.0071
ASP 1840.0124
GLU 1850.0125
TYR 1860.0093
GLU 1870.0160
ARG 1880.0204
HIS 1890.0165
ASN 1900.0170
SER 1910.0123
TYR 1920.0089
THR 1930.0087
CYS 1940.0110
GLU 1950.0102
ALA 1960.0106
THR 1970.0097
HIS 1980.0074
LYS 1990.0093
THR 2000.0087
SER 2010.0061
THR 2020.0113
SER 2030.0063
PRO 2040.0099
ILE 2050.0094
VAL 2060.0105
LYS 2070.0101
SER 2080.0095
PHE 2090.0120
ASN 2100.0138
ARG 2110.0162
ASN 2120.0145
GLU 2130.0136
CYS 2140.0157
GLU 10.0489
VAL 20.0222
GLN 30.0157
LEU 40.0096
VAL 50.0115
GLU 60.0127
SER 70.0139
GLY 80.0124
GLY 90.0118
GLY 100.0086
LEU 110.0068
VAL 120.0140
LYS 130.0318
PRO 140.0255
GLY 150.0217
GLY 160.0180
SER 170.0118
LEU 180.0089
LYS 190.0104
LEU 200.0109
SER 210.0121
CYS 220.0124
ALA 230.0107
ALA 240.0091
SER 250.0192
GLY 260.0279
PHE 270.0259
ILE 280.0214
PHE 290.0144
SER 300.0145
ASP 310.0109
TYR 320.0080
TYR 330.0065
MET 340.0084
TYR 350.0089
TRP 360.0096
VAL 370.0064
ARG 380.0075
GLN 390.0105
THR 400.0181
PRO 410.0317
GLU 420.0354
LYS 430.0216
ARG 440.0161
LEU 450.0062
GLU 460.0043
TRP 470.0059
VAL 480.0057
ALA 490.0089
THR 500.0094
ILE 510.0079
SER 520.0079
ASP 520.0044
GLY 530.0045
ASN 540.0080
SER 550.0064
TYR 560.0095
THR 570.0094
TYR 580.0095
TYR 590.0086
VAL 600.0095
ASP 610.0142
SER 620.0099
VAL 630.0089
LYS 640.0126
GLY 650.0147
ARG 660.0114
PHE 670.0088
THR 680.0083
ILE 690.0079
SER 700.0116
ARG 710.0098
ASP 720.0145
ASN 730.0181
ALA 740.0269
LYS 750.0226
ASN 760.0147
ASN 770.0117
LEU 780.0102
TYR 790.0106
LEU 800.0090
GLN 810.0094
MET 820.0099
SER 820.0116
SER 820.0113
LEU 820.0091
LYS 830.0118
SER 840.0164
GLU 850.0138
ASP 860.0092
THR 870.0107
ALA 880.0123
ILE 890.0138
TYR 900.0115
TYR 910.0078
CYS 920.0087
ALA 930.0093
ARG 940.0096
ASP 950.0108
GLY 960.0143
PRO 970.0139
THR 980.0120
ASP 990.0127
SER 1000.0100
SER 1000.0079
GLY 1000.0059
TYR 1000.0078
GLY 1000.0087
GLY 1000.0102
PHE 1000.0105
GLY 1010.0109
TYR 1020.0115
TRP 1030.0077
GLY 1040.0093
GLN 1050.0105
GLY 1060.0145
THR 1070.0132
LEU 1080.0128
VAL 1090.0109
THR 1100.0084
VAL 1110.0109
SER 1120.0302
GLU 1130.0449
ALA 1140.0278
LYS 1150.0122
THR 1160.0061
THR 1170.0045
PRO 1180.0092
PRO 1190.0064
SER 1200.0057
VAL 1210.0039
TYR 1220.0058
PRO 1230.0066
LEU 1240.0096
ALA 1250.0103
PRO 1260.0120
GLY 1270.0104
SER 1280.0092
ALA 1290.0109
ALA 1300.0150
GLN 1330.0596
THR 1340.0497
ASN 1350.0541
SER 1360.0250
MET 1370.0233
VAL 1380.0170
THR 1390.0118
LEU 1400.0100
GLY 1410.0084
CYS 1420.0037
LEU 1430.0051
VAL 1440.0044
LYS 1450.0025
GLY 1460.0054
TYR 1470.0057
PHE 1480.0056
PRO 1490.0063
GLU 1500.0070
PRO 1510.0095
VAL 1520.0048
THR 1530.0037
VAL 1540.0067
THR 1560.0163
TRP 1570.0163
ASN 1620.0297
SER 1630.0369
GLY 1640.0403
SER 1650.0444
LEU 1660.0283
SER 1670.0302
SER 1680.0251
GLY 1690.0177
VAL 1710.0083
HIS 1720.0078
THR 1730.0072
PHE 1740.0086
PRO 1750.0090
ALA 1760.0085
VAL 1770.0109
LEU 1780.0190
GLN 1790.0268
SER 1800.0667
ASP 1830.0260
LEU 1840.0151
TYR 1850.0064
THR 1860.0011
LEU 1870.0043
SER 1880.0068
SER 1890.0079
SER 1900.0085
VAL 1910.0060
THR 1920.0203
VAL 1930.0226
PRO 1940.0263
SER 1950.0163
SER 1960.0314
PRO 1980.0247
ARG 1990.0209
PRO 2000.0203
SER 2020.0251
GLU 2030.0140
THR 2040.0200
VAL 2050.0181
THR 2060.0186
CYS 2080.0119
ASN 2090.0123
VAL 2100.0058
ALA 2110.0043
HIS 2120.0065
PRO 2130.0130
ALA 2140.0143
SER 2150.0153
SER 2160.0180
THR 2170.0091
LYS 2180.0037
VAL 2190.0086
ASP 2200.0143
LYS 2210.0120
LYS 2220.0148
ILE 2230.0129
VAL 2260.0083
PRO 2270.0120
ARG 2280.0095
ASP 2320.0166
CYS 2330.0459

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.