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***  2J5L Structure of a Plasmodium falciparum apical membrane antigen 1-Fab F8. 12.19 complex  ***

<R2> analysis for 2608162332391822803

---  normal mode 39  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0549
ILE 4790.0167
PHE 4800.0124
ILE 4810.0181
SER 4820.0175
ASP 4830.0168
ASP 4840.0174
LYS 4850.0144
ASP 4860.0137
SER 4870.0156
LEU 4880.0109
LYS 4890.0078
CYS 4900.0069
PRO 4910.0059
CYS 4920.0042
ASP 4930.0043
PRO 4940.0097
GLU 4950.0107
MET 4960.0122
VAL 4970.0210
SER 4980.0139
GLN 4990.0187
SER 5000.0273
THR 5010.0179
CYS 5020.0093
ARG 5030.0111
PHE 5040.0141
PHE 5050.0172
VAL 5060.0100
CYS 5070.0043
LYS 5080.0053
CYS 5090.0089
VAL 5100.0157
GLU 5110.0188
ARG 5120.0471
SER 20.0167
VAL 30.0186
LEU 40.0164
SER 50.0175
GLN 60.0137
SER 70.0138
PRO 80.0091
ALA 90.0087
ILE 100.0071
LEU 110.0068
SER 120.0116
ALA 130.0176
SER 140.0265
PRO 150.0308
GLY 160.0345
GLU 170.0294
LYS 180.0216
VAL 190.0152
THR 200.0036
MET 210.0074
THR 220.0120
CYS 230.0171
ARG 240.0205
ALA 250.0197
ARG 260.0428
SER 270.0338
SER 290.0267
VAL 300.0186
SER 310.0141
TYR 320.0102
MET 330.0111
HIS 340.0109
TRP 350.0101
TYR 360.0101
GLN 370.0103
GLN 380.0079
LYS 390.0090
SER 400.0107
GLY 410.0272
SER 420.0191
SER 430.0083
PRO 440.0093
LYS 450.0128
PRO 460.0133
TRP 470.0138
ILE 480.0141
HIS 490.0152
ALA 500.0134
THR 510.0141
SER 520.0170
ASN 530.0231
LEU 540.0229
ALA 550.0230
SER 560.0393
GLY 570.0338
VAL 580.0217
PRO 590.0088
ALA 600.0060
ARG 610.0054
PHE 620.0066
SER 630.0095
GLY 640.0112
SER 650.0135
GLY 660.0149
SER 670.0167
GLY 680.0215
THR 690.0233
SER 700.0207
TYR 710.0126
SER 720.0125
LEU 730.0118
THR 740.0074
ILE 750.0067
SER 760.0148
ARG 770.0226
VAL 780.0192
GLU 790.0229
ALA 800.0165
GLU 810.0156
ASP 820.0117
ALA 830.0105
ALA 840.0054
THR 850.0054
TYR 860.0061
TYR 870.0066
CYS 880.0073
GLN 890.0085
GLN 900.0066
TRP 910.0045
SER 920.0104
SER 930.0093
HIS 940.0084
PRO 950.0075
PRO 960.0039
THR 970.0034
PHE 980.0049
GLY 990.0069
SER 1000.0069
GLY 1010.0084
THR 1020.0057
LYS 1030.0058
LEU 1040.0085
GLU 1050.0107
ILE 1060.0143
LYS 1070.0152
ARG 1080.0197
ALA 1090.0244
ASP 1100.0270
ALA 1110.0248
ALA 1120.0226
PRO 1130.0128
THR 1140.0108
VAL 1150.0100
SER 1160.0066
ILE 1170.0049
PHE 1180.0036
PRO 1190.0028
PRO 1200.0054
SER 1210.0077
SER 1220.0116
GLU 1230.0078
GLN 1240.0071
LEU 1250.0067
THR 1260.0067
SER 1270.0042
GLY 1280.0046
GLY 1290.0052
ALA 1300.0073
SER 1310.0069
VAL 1320.0072
VAL 1330.0078
CYS 1340.0071
PHE 1350.0055
LEU 1360.0064
ASN 1370.0087
ASN 1380.0134
PHE 1390.0157
TYR 1400.0177
PRO 1410.0156
LYS 1420.0134
ASP 1430.0131
ILE 1440.0124
ASN 1450.0147
VAL 1460.0124
LYS 1470.0119
TRP 1480.0109
LYS 1490.0113
ILE 1500.0093
ASP 1510.0083
GLY 1520.0108
SER 1530.0129
GLU 1540.0165
ARG 1550.0152
GLN 1560.0169
ASN 1570.0204
GLY 1580.0103
VAL 1590.0122
LEU 1600.0141
ASN 1610.0097
SER 1620.0085
TRP 1630.0076
THR 1640.0091
ASP 1650.0108
GLN 1660.0106
ASP 1670.0166
SER 1680.0182
LYS 1690.0207
ASP 1700.0205
SER 1710.0150
THR 1720.0144
TYR 1730.0085
SER 1740.0077
MET 1750.0079
SER 1760.0091
SER 1770.0094
THR 1780.0098
LEU 1790.0108
THR 1800.0090
LEU 1810.0086
THR 1820.0102
LYS 1830.0099
ASP 1840.0114
GLU 1850.0133
TYR 1860.0107
GLU 1870.0104
ARG 1880.0137
HIS 1890.0128
ASN 1900.0103
SER 1910.0054
TYR 1920.0074
THR 1930.0105
CYS 1940.0136
GLU 1950.0143
ALA 1960.0130
THR 1970.0228
HIS 1980.0211
LYS 1990.0245
THR 2000.0308
SER 2010.0284
THR 2020.0374
SER 2030.0365
PRO 2040.0272
ILE 2050.0187
VAL 2060.0187
LYS 2070.0159
SER 2080.0124
PHE 2090.0075
ASN 2100.0088
ARG 2110.0087
ASN 2120.0220
GLU 2130.0224
CYS 2140.0228
GLU 10.0508
VAL 20.0241
GLN 30.0193
LEU 40.0065
VAL 50.0079
GLU 60.0076
SER 70.0098
GLY 80.0082
GLY 90.0140
GLY 100.0310
LEU 110.0296
VAL 120.0293
LYS 130.0335
PRO 140.0246
GLY 150.0213
GLY 160.0166
SER 170.0148
LEU 180.0166
LYS 190.0091
LEU 200.0088
SER 210.0091
CYS 220.0086
ALA 230.0065
ALA 240.0022
SER 250.0084
GLY 260.0179
PHE 270.0168
ILE 280.0107
PHE 290.0057
SER 300.0097
ASP 310.0040
TYR 320.0025
TYR 330.0050
MET 340.0055
TYR 350.0064
TRP 360.0070
VAL 370.0057
ARG 380.0076
GLN 390.0098
THR 400.0147
PRO 410.0230
GLU 420.0281
LYS 430.0173
ARG 440.0146
LEU 450.0070
GLU 460.0093
TRP 470.0084
VAL 480.0093
ALA 490.0093
THR 500.0087
ILE 510.0081
SER 520.0081
ASP 520.0056
GLY 530.0071
ASN 540.0077
SER 550.0055
TYR 560.0080
THR 570.0088
TYR 580.0097
TYR 590.0102
VAL 600.0107
ASP 610.0097
SER 620.0103
VAL 630.0091
LYS 640.0057
GLY 650.0042
ARG 660.0060
PHE 670.0086
THR 680.0084
ILE 690.0090
SER 700.0103
ARG 710.0093
ASP 720.0099
ASN 730.0097
ALA 740.0104
LYS 750.0080
ASN 760.0052
ASN 770.0076
LEU 780.0089
TYR 790.0105
LEU 800.0099
GLN 810.0088
MET 820.0112
SER 820.0096
SER 820.0096
LEU 820.0106
LYS 830.0102
SER 840.0120
GLU 850.0063
ASP 860.0075
THR 870.0109
ALA 880.0114
ILE 890.0109
TYR 900.0079
TYR 910.0053
CYS 920.0044
ALA 930.0033
ARG 940.0035
ASP 950.0041
GLY 960.0055
PRO 970.0114
THR 980.0119
ASP 990.0139
SER 1000.0095
SER 1000.0081
GLY 1000.0075
TYR 1000.0069
GLY 1000.0049
GLY 1000.0046
PHE 1000.0039
GLY 1010.0059
TYR 1020.0062
TRP 1030.0020
GLY 1040.0024
GLN 1050.0027
GLY 1060.0110
THR 1070.0097
LEU 1080.0159
VAL 1090.0193
THR 1100.0209
VAL 1110.0193
SER 1120.0225
GLU 1130.0295
ALA 1140.0288
LYS 1150.0240
THR 1160.0264
THR 1170.0245
PRO 1180.0169
PRO 1190.0171
SER 1200.0163
VAL 1210.0106
TYR 1220.0110
PRO 1230.0120
LEU 1240.0031
ALA 1250.0049
PRO 1260.0087
GLY 1270.0203
SER 1280.0167
ALA 1290.0338
ALA 1300.0429
GLN 1330.0549
THR 1340.0409
ASN 1350.0304
SER 1360.0224
MET 1370.0218
VAL 1380.0205
THR 1390.0046
LEU 1400.0040
GLY 1410.0045
CYS 1420.0107
LEU 1430.0116
VAL 1440.0114
LYS 1450.0148
GLY 1460.0133
TYR 1470.0163
PHE 1480.0224
PRO 1490.0239
GLU 1500.0245
PRO 1510.0193
VAL 1520.0159
THR 1530.0176
VAL 1540.0119
THR 1560.0113
TRP 1570.0051
ASN 1620.0181
SER 1630.0200
GLY 1640.0361
SER 1650.0501
LEU 1660.0375
SER 1670.0408
SER 1680.0379
GLY 1690.0130
VAL 1710.0070
HIS 1720.0061
THR 1730.0092
PHE 1740.0084
PRO 1750.0089
ALA 1760.0103
VAL 1770.0139
LEU 1780.0115
GLN 1790.0095
SER 1800.0125
ASP 1830.0137
LEU 1840.0140
TYR 1850.0159
THR 1860.0137
LEU 1870.0128
SER 1880.0125
SER 1890.0066
SER 1900.0027
VAL 1910.0036
THR 1920.0174
VAL 1930.0171
PRO 1940.0215
SER 1950.0247
SER 1960.0249
PRO 1980.0159
ARG 1990.0228
PRO 2000.0297
SER 2020.0344
GLU 2030.0248
THR 2040.0273
VAL 2050.0146
THR 2060.0084
CYS 2080.0077
ASN 2090.0098
VAL 2100.0135
ALA 2110.0217
HIS 2120.0197
PRO 2130.0200
ALA 2140.0248
SER 2150.0190
SER 2160.0210
THR 2170.0181
LYS 2180.0219
VAL 2190.0208
ASP 2200.0092
LYS 2210.0104
LYS 2220.0104
ILE 2230.0094
VAL 2260.0110
PRO 2270.0132
ARG 2280.0146
ASP 2320.0270
CYS 2330.0341

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.