CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J5L Structure of a Plasmodium falciparum apical membrane antigen 1-Fab F8. 12.19 complex  ***

<R2> analysis for 2608162332391822803

---  normal mode 40  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0718
ILE 4790.0277
PHE 4800.0136
ILE 4810.0167
SER 4820.0177
ASP 4830.0155
ASP 4840.0105
LYS 4850.0060
ASP 4860.0102
SER 4870.0150
LEU 4880.0087
LYS 4890.0118
CYS 4900.0091
PRO 4910.0106
CYS 4920.0103
ASP 4930.0090
PRO 4940.0038
GLU 4950.0025
MET 4960.0061
VAL 4970.0162
SER 4980.0150
GLN 4990.0217
SER 5000.0386
THR 5010.0165
CYS 5020.0126
ARG 5030.0158
PHE 5040.0143
PHE 5050.0107
VAL 5060.0056
CYS 5070.0052
LYS 5080.0074
CYS 5090.0149
VAL 5100.0181
GLU 5110.0184
ARG 5120.0617
SER 20.0099
VAL 30.0072
LEU 40.0046
SER 50.0074
GLN 60.0071
SER 70.0077
PRO 80.0103
ALA 90.0108
ILE 100.0096
LEU 110.0099
SER 120.0082
ALA 130.0085
SER 140.0138
PRO 150.0196
GLY 160.0294
GLU 170.0254
LYS 180.0189
VAL 190.0149
THR 200.0066
MET 210.0087
THR 220.0129
CYS 230.0124
ARG 240.0146
ALA 250.0108
ARG 260.0254
SER 270.0053
SER 290.0164
VAL 300.0162
SER 310.0196
TYR 320.0117
MET 330.0110
HIS 340.0109
TRP 350.0083
TYR 360.0076
GLN 370.0060
GLN 380.0071
LYS 390.0078
SER 400.0098
GLY 410.0066
SER 420.0068
SER 430.0063
PRO 440.0070
LYS 450.0081
PRO 460.0082
TRP 470.0096
ILE 480.0101
HIS 490.0115
ALA 500.0167
THR 510.0152
SER 520.0177
ASN 530.0182
LEU 540.0171
ALA 550.0182
SER 560.0284
GLY 570.0247
VAL 580.0152
PRO 590.0116
ALA 600.0062
ARG 610.0057
PHE 620.0053
SER 630.0085
GLY 640.0143
SER 650.0199
GLY 660.0236
SER 670.0299
GLY 680.0254
THR 690.0197
SER 700.0235
TYR 710.0157
SER 720.0126
LEU 730.0101
THR 740.0077
ILE 750.0048
SER 760.0120
ARG 770.0215
VAL 780.0127
GLU 790.0166
ALA 800.0101
GLU 810.0133
ASP 820.0081
ALA 830.0064
ALA 840.0073
THR 850.0077
TYR 860.0054
TYR 870.0067
CYS 880.0084
GLN 890.0084
GLN 900.0081
TRP 910.0091
SER 920.0144
SER 930.0140
HIS 940.0135
PRO 950.0113
PRO 960.0090
THR 970.0061
PHE 980.0027
GLY 990.0034
SER 1000.0031
GLY 1010.0083
THR 1020.0077
LYS 1030.0074
LEU 1040.0067
GLU 1050.0067
ILE 1060.0045
LYS 1070.0088
ARG 1080.0125
ALA 1090.0205
ASP 1100.0237
ALA 1110.0194
ALA 1120.0159
PRO 1130.0111
THR 1140.0071
VAL 1150.0041
SER 1160.0054
ILE 1170.0055
PHE 1180.0068
PRO 1190.0086
PRO 1200.0101
SER 1210.0101
SER 1220.0134
GLU 1230.0177
GLN 1240.0203
LEU 1250.0228
THR 1260.0359
SER 1270.0452
GLY 1280.0297
GLY 1290.0271
ALA 1300.0176
SER 1310.0098
VAL 1320.0082
VAL 1330.0067
CYS 1340.0067
PHE 1350.0052
LEU 1360.0041
ASN 1370.0059
ASN 1380.0097
PHE 1390.0129
TYR 1400.0180
PRO 1410.0193
LYS 1420.0171
ASP 1430.0176
ILE 1440.0152
ASN 1450.0143
VAL 1460.0115
LYS 1470.0115
TRP 1480.0085
LYS 1490.0144
ILE 1500.0128
ASP 1510.0124
GLY 1520.0191
SER 1530.0221
GLU 1540.0201
ARG 1550.0150
GLN 1560.0124
ASN 1570.0110
GLY 1580.0075
VAL 1590.0080
LEU 1600.0086
ASN 1610.0073
SER 1620.0067
TRP 1630.0043
THR 1640.0053
ASP 1650.0057
GLN 1660.0081
ASP 1670.0080
SER 1680.0076
LYS 1690.0085
ASP 1700.0115
SER 1710.0117
THR 1720.0113
TYR 1730.0082
SER 1740.0055
MET 1750.0049
SER 1760.0054
SER 1770.0051
THR 1780.0055
LEU 1790.0102
THR 1800.0115
LEU 1810.0134
THR 1820.0221
LYS 1830.0138
ASP 1840.0076
GLU 1850.0137
TYR 1860.0111
GLU 1870.0059
ARG 1880.0131
HIS 1890.0135
ASN 1900.0105
SER 1910.0115
TYR 1920.0115
THR 1930.0125
CYS 1940.0101
GLU 1950.0122
ALA 1960.0126
THR 1970.0148
HIS 1980.0157
LYS 1990.0158
THR 2000.0132
SER 2010.0409
THR 2020.0718
SER 2030.0268
PRO 2040.0114
ILE 2050.0199
VAL 2060.0104
LYS 2070.0094
SER 2080.0086
PHE 2090.0106
ASN 2100.0088
ARG 2110.0075
ASN 2120.0071
GLU 2130.0096
CYS 2140.0138
GLU 10.0226
VAL 20.0148
GLN 30.0130
LEU 40.0080
VAL 50.0079
GLU 60.0055
SER 70.0083
GLY 80.0088
GLY 90.0087
GLY 100.0060
LEU 110.0068
VAL 120.0115
LYS 130.0163
PRO 140.0191
GLY 150.0209
GLY 160.0155
SER 170.0122
LEU 180.0101
LYS 190.0085
LEU 200.0075
SER 210.0075
CYS 220.0074
ALA 230.0128
ALA 240.0153
SER 250.0188
GLY 260.0230
PHE 270.0198
ILE 280.0200
PHE 290.0164
SER 300.0143
ASP 310.0137
TYR 320.0123
TYR 330.0107
MET 340.0075
TYR 350.0071
TRP 360.0050
VAL 370.0045
ARG 380.0046
GLN 390.0044
THR 400.0077
PRO 410.0089
GLU 420.0088
LYS 430.0048
ARG 440.0035
LEU 450.0022
GLU 460.0060
TRP 470.0076
VAL 480.0077
ALA 490.0084
THR 500.0090
ILE 510.0081
SER 520.0101
ASP 520.0115
GLY 530.0142
ASN 540.0141
SER 550.0096
TYR 560.0090
THR 570.0101
TYR 580.0104
TYR 590.0107
VAL 600.0126
ASP 610.0191
SER 620.0130
VAL 630.0080
LYS 640.0123
GLY 650.0152
ARG 660.0104
PHE 670.0058
THR 680.0067
ILE 690.0032
SER 700.0006
ARG 710.0051
ASP 720.0096
ASN 730.0139
ALA 740.0206
LYS 750.0237
ASN 760.0173
ASN 770.0123
LEU 780.0066
TYR 790.0048
LEU 800.0040
GLN 810.0077
MET 820.0093
SER 820.0114
SER 820.0115
LEU 820.0116
LYS 830.0120
SER 840.0152
GLU 850.0113
ASP 860.0092
THR 870.0099
ALA 880.0068
ILE 890.0061
TYR 900.0051
TYR 910.0037
CYS 920.0048
ALA 930.0066
ARG 940.0084
ASP 950.0082
GLY 960.0087
PRO 970.0087
THR 980.0081
ASP 990.0090
SER 1000.0059
SER 1000.0055
GLY 1000.0056
TYR 1000.0063
GLY 1000.0067
GLY 1000.0068
PHE 1000.0068
GLY 1010.0068
TYR 1020.0074
TRP 1030.0041
GLY 1040.0030
GLN 1050.0027
GLY 1060.0056
THR 1070.0060
LEU 1080.0070
VAL 1090.0085
THR 1100.0101
VAL 1110.0133
SER 1120.0129
GLU 1130.0146
ALA 1140.0048
LYS 1150.0149
THR 1160.0112
THR 1170.0111
PRO 1180.0113
PRO 1190.0120
SER 1200.0149
VAL 1210.0127
TYR 1220.0135
PRO 1230.0112
LEU 1240.0131
ALA 1250.0122
PRO 1260.0113
GLY 1270.0042
SER 1280.0198
ALA 1290.0444
ALA 1300.0278
GLN 1330.0359
THR 1340.0380
ASN 1350.0244
SER 1360.0405
MET 1370.0272
VAL 1380.0114
THR 1390.0137
LEU 1400.0150
GLY 1410.0168
CYS 1420.0146
LEU 1430.0166
VAL 1440.0139
LYS 1450.0164
GLY 1460.0146
TYR 1470.0109
PHE 1480.0097
PRO 1490.0107
GLU 1500.0124
PRO 1510.0112
VAL 1520.0073
THR 1530.0074
VAL 1540.0125
THR 1560.0207
TRP 1570.0245
ASN 1620.0359
SER 1630.0404
GLY 1640.0503
SER 1650.0490
LEU 1660.0437
SER 1670.0468
SER 1680.0575
GLY 1690.0472
VAL 1710.0197
HIS 1720.0189
THR 1730.0173
PHE 1740.0086
PRO 1750.0050
ALA 1760.0052
VAL 1770.0093
LEU 1780.0201
GLN 1790.0321
SER 1800.0716
ASP 1830.0205
LEU 1840.0124
TYR 1850.0075
THR 1860.0134
LEU 1870.0130
SER 1880.0158
SER 1890.0191
SER 1900.0205
VAL 1910.0209
THR 1920.0221
VAL 1930.0224
PRO 1940.0253
SER 1950.0243
SER 1960.0243
PRO 1980.0200
ARG 1990.0169
PRO 2000.0260
SER 2020.0412
GLU 2030.0324
THR 2040.0208
VAL 2050.0161
THR 2060.0136
CYS 2080.0151
ASN 2090.0137
VAL 2100.0075
ALA 2110.0089
HIS 2120.0092
PRO 2130.0144
ALA 2140.0161
SER 2150.0167
SER 2160.0156
THR 2170.0140
LYS 2180.0121
VAL 2190.0112
ASP 2200.0101
LYS 2210.0039
LYS 2220.0091
ILE 2230.0130
VAL 2260.0124
PRO 2270.0159
ARG 2280.0161
ASP 2320.0193
CYS 2330.0206

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.