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***  2J5L Structure of a Plasmodium falciparum apical membrane antigen 1-Fab F8. 12.19 complex  ***

<R2> analysis for 2608162332391822803

---  normal mode 41  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0628
ILE 4790.0140
PHE 4800.0122
ILE 4810.0108
SER 4820.0134
ASP 4830.0164
ASP 4840.0170
LYS 4850.0118
ASP 4860.0125
SER 4870.0135
LEU 4880.0097
LYS 4890.0097
CYS 4900.0097
PRO 4910.0048
CYS 4920.0055
ASP 4930.0060
PRO 4940.0093
GLU 4950.0089
MET 4960.0112
VAL 4970.0146
SER 4980.0098
GLN 4990.0082
SER 5000.0148
THR 5010.0199
CYS 5020.0203
ARG 5030.0159
PHE 5040.0154
PHE 5050.0151
VAL 5060.0085
CYS 5070.0090
LYS 5080.0082
CYS 5090.0061
VAL 5100.0078
GLU 5110.0089
ARG 5120.0259
SER 20.0081
VAL 30.0085
LEU 40.0035
SER 50.0045
GLN 60.0034
SER 70.0035
PRO 80.0056
ALA 90.0078
ILE 100.0075
LEU 110.0069
SER 120.0067
ALA 130.0070
SER 140.0080
PRO 150.0112
GLY 160.0152
GLU 170.0119
LYS 180.0094
VAL 190.0070
THR 200.0025
MET 210.0018
THR 220.0034
CYS 230.0028
ARG 240.0066
ALA 250.0040
ARG 260.0222
SER 270.0016
SER 290.0080
VAL 300.0082
SER 310.0107
TYR 320.0074
MET 330.0068
HIS 340.0073
TRP 350.0072
TYR 360.0083
GLN 370.0080
GLN 380.0087
LYS 390.0059
SER 400.0094
GLY 410.0069
SER 420.0065
SER 430.0080
PRO 440.0100
LYS 450.0095
PRO 460.0098
TRP 470.0102
ILE 480.0092
HIS 490.0102
ALA 500.0123
THR 510.0107
SER 520.0136
ASN 530.0164
LEU 540.0179
ALA 550.0186
SER 560.0354
GLY 570.0316
VAL 580.0185
PRO 590.0093
ALA 600.0113
ARG 610.0067
PHE 620.0066
SER 630.0090
GLY 640.0101
SER 650.0127
GLY 660.0135
SER 670.0167
GLY 680.0135
THR 690.0096
SER 700.0122
TYR 710.0074
SER 720.0056
LEU 730.0052
THR 740.0062
ILE 750.0047
SER 760.0075
ARG 770.0130
VAL 780.0086
GLU 790.0116
ALA 800.0109
GLU 810.0106
ASP 820.0065
ALA 830.0050
ALA 840.0056
THR 850.0080
TYR 860.0064
TYR 870.0068
CYS 880.0065
GLN 890.0062
GLN 900.0048
TRP 910.0030
SER 920.0053
SER 930.0051
HIS 940.0049
PRO 950.0013
PRO 960.0029
THR 970.0043
PHE 980.0067
GLY 990.0062
SER 1000.0062
GLY 1010.0083
THR 1020.0064
LYS 1030.0062
LEU 1040.0068
GLU 1050.0071
ILE 1060.0067
LYS 1070.0106
ARG 1080.0110
ALA 1090.0142
ASP 1100.0179
ALA 1110.0174
ALA 1120.0202
PRO 1130.0163
THR 1140.0167
VAL 1150.0157
SER 1160.0070
ILE 1170.0069
PHE 1180.0096
PRO 1190.0163
PRO 1200.0123
SER 1210.0170
SER 1220.0272
GLU 1230.0236
GLN 1240.0150
LEU 1250.0171
THR 1260.0257
SER 1270.0217
GLY 1280.0159
GLY 1290.0097
ALA 1300.0106
SER 1310.0101
VAL 1320.0066
VAL 1330.0073
CYS 1340.0144
PHE 1350.0125
LEU 1360.0105
ASN 1370.0185
ASN 1380.0161
PHE 1390.0163
TYR 1400.0162
PRO 1410.0167
LYS 1420.0186
ASP 1430.0237
ILE 1440.0225
ASN 1450.0231
VAL 1460.0141
LYS 1470.0134
TRP 1480.0155
LYS 1490.0225
ILE 1500.0244
ASP 1510.0242
GLY 1520.0323
SER 1530.0349
GLU 1540.0413
ARG 1550.0328
GLN 1560.0307
ASN 1570.0321
GLY 1580.0182
VAL 1590.0123
LEU 1600.0112
ASN 1610.0085
SER 1620.0094
TRP 1630.0106
THR 1640.0120
ASP 1650.0116
GLN 1660.0113
ASP 1670.0186
SER 1680.0176
LYS 1690.0202
ASP 1700.0123
SER 1710.0109
THR 1720.0131
TYR 1730.0146
SER 1740.0154
MET 1750.0151
SER 1760.0113
SER 1770.0054
THR 1780.0052
LEU 1790.0136
THR 1800.0149
LEU 1810.0146
THR 1820.0111
LYS 1830.0095
ASP 1840.0105
GLU 1850.0162
TYR 1860.0166
GLU 1870.0157
ARG 1880.0199
HIS 1890.0238
ASN 1900.0266
SER 1910.0196
TYR 1920.0186
THR 1930.0150
CYS 1940.0182
GLU 1950.0178
ALA 1960.0201
THR 1970.0271
HIS 1980.0251
LYS 1990.0247
THR 2000.0246
SER 2010.0252
THR 2020.0485
SER 2030.0261
PRO 2040.0257
ILE 2050.0198
VAL 2060.0141
LYS 2070.0156
SER 2080.0139
PHE 2090.0213
ASN 2100.0223
ARG 2110.0237
ASN 2120.0268
GLU 2130.0300
CYS 2140.0331
GLU 10.0221
VAL 20.0105
GLN 30.0112
LEU 40.0063
VAL 50.0067
GLU 60.0057
SER 70.0040
GLY 80.0024
GLY 90.0009
GLY 100.0038
LEU 110.0044
VAL 120.0039
LYS 130.0040
PRO 140.0037
GLY 150.0022
GLY 160.0049
SER 170.0054
LEU 180.0049
LYS 190.0053
LEU 200.0052
SER 210.0059
CYS 220.0068
ALA 230.0076
ALA 240.0073
SER 250.0059
GLY 260.0086
PHE 270.0071
ILE 280.0055
PHE 290.0046
SER 300.0027
ASP 310.0040
TYR 320.0046
TYR 330.0047
MET 340.0021
TYR 350.0029
TRP 360.0040
VAL 370.0052
ARG 380.0049
GLN 390.0053
THR 400.0073
PRO 410.0079
GLU 420.0107
LYS 430.0083
ARG 440.0095
LEU 450.0088
GLU 460.0035
TRP 470.0037
VAL 480.0031
ALA 490.0029
THR 500.0029
ILE 510.0030
SER 520.0046
ASP 520.0054
GLY 530.0057
ASN 540.0051
SER 550.0037
TYR 560.0037
THR 570.0039
TYR 580.0023
TYR 590.0035
VAL 600.0048
ASP 610.0092
SER 620.0087
VAL 630.0074
LYS 640.0086
GLY 650.0088
ARG 660.0078
PHE 670.0056
THR 680.0054
ILE 690.0049
SER 700.0051
ARG 710.0052
ASP 720.0065
ASN 730.0042
ALA 740.0067
LYS 750.0094
ASN 760.0064
ASN 770.0070
LEU 780.0064
TYR 790.0068
LEU 800.0062
GLN 810.0059
MET 820.0063
SER 820.0067
SER 820.0054
LEU 820.0031
LYS 830.0032
SER 840.0048
GLU 850.0061
ASP 860.0049
THR 870.0046
ALA 880.0041
ILE 890.0041
TYR 900.0038
TYR 910.0028
CYS 920.0031
ALA 930.0045
ARG 940.0013
ASP 950.0024
GLY 960.0032
PRO 970.0072
THR 980.0068
ASP 990.0060
SER 1000.0055
SER 1000.0052
GLY 1000.0058
TYR 1000.0050
GLY 1000.0035
GLY 1000.0026
PHE 1000.0015
GLY 1010.0019
TYR 1020.0012
TRP 1030.0040
GLY 1040.0039
GLN 1050.0040
GLY 1060.0042
THR 1070.0019
LEU 1080.0030
VAL 1090.0039
THR 1100.0047
VAL 1110.0044
SER 1120.0076
GLU 1130.0090
ALA 1140.0066
LYS 1150.0088
THR 1160.0065
THR 1170.0061
PRO 1180.0055
PRO 1190.0083
SER 1200.0131
VAL 1210.0130
TYR 1220.0171
PRO 1230.0209
LEU 1240.0166
ALA 1250.0180
PRO 1260.0203
GLY 1270.0225
SER 1280.0316
ALA 1290.0395
ALA 1300.0140
GLN 1330.0475
THR 1340.0467
ASN 1350.0382
SER 1360.0239
MET 1370.0040
VAL 1380.0203
THR 1390.0265
LEU 1400.0239
GLY 1410.0245
CYS 1420.0194
LEU 1430.0169
VAL 1440.0138
LYS 1450.0109
GLY 1460.0082
TYR 1470.0047
PHE 1480.0035
PRO 1490.0049
GLU 1500.0067
PRO 1510.0088
VAL 1520.0102
THR 1530.0166
VAL 1540.0216
THR 1560.0259
TRP 1570.0268
ASN 1620.0230
SER 1630.0253
GLY 1640.0404
SER 1650.0401
LEU 1660.0450
SER 1670.0537
SER 1680.0622
GLY 1690.0488
VAL 1710.0339
HIS 1720.0242
THR 1730.0213
PHE 1740.0139
PRO 1750.0113
ALA 1760.0114
VAL 1770.0045
LEU 1780.0046
GLN 1790.0039
SER 1800.0072
ASP 1830.0040
LEU 1840.0030
TYR 1850.0057
THR 1860.0094
LEU 1870.0124
SER 1880.0166
SER 1890.0233
SER 1900.0260
VAL 1910.0301
THR 1920.0390
VAL 1930.0217
PRO 1940.0057
SER 1950.0107
SER 1960.0319
PRO 1980.0299
ARG 1990.0213
PRO 2000.0330
SER 2020.0628
GLU 2030.0453
THR 2040.0236
VAL 2050.0251
THR 2060.0236
CYS 2080.0224
ASN 2090.0167
VAL 2100.0159
ALA 2110.0115
HIS 2120.0062
PRO 2130.0075
ALA 2140.0071
SER 2150.0060
SER 2160.0031
THR 2170.0071
LYS 2180.0094
VAL 2190.0150
ASP 2200.0168
LYS 2210.0214
LYS 2220.0237
ILE 2230.0239
VAL 2260.0266
PRO 2270.0280
ARG 2280.0265
ASP 2320.0425
CYS 2330.0386

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.