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***  2J5L Structure of a Plasmodium falciparum apical membrane antigen 1-Fab F8. 12.19 complex  ***

<R2> analysis for 2608162332391822803

---  normal mode 54  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1074
ILE 4790.0162
PHE 4800.0094
ILE 4810.0090
SER 4820.0111
ASP 4830.0169
ASP 4840.0237
LYS 4850.0160
ASP 4860.0166
SER 4870.0154
LEU 4880.0083
LYS 4890.0073
CYS 4900.0056
PRO 4910.0040
CYS 4920.0032
ASP 4930.0036
PRO 4940.0128
GLU 4950.0157
MET 4960.0166
VAL 4970.0165
SER 4980.0102
GLN 4990.0067
SER 5000.0307
THR 5010.0291
CYS 5020.0195
ARG 5030.0162
PHE 5040.0144
PHE 5050.0188
VAL 5060.0120
CYS 5070.0103
LYS 5080.0108
CYS 5090.0072
VAL 5100.0106
GLU 5110.0120
ARG 5120.0242
SER 20.0033
VAL 30.0041
LEU 40.0037
SER 50.0065
GLN 60.0053
SER 70.0055
PRO 80.0039
ALA 90.0057
ILE 100.0055
LEU 110.0037
SER 120.0067
ALA 130.0090
SER 140.0173
PRO 150.0248
GLY 160.0311
GLU 170.0281
LYS 180.0238
VAL 190.0193
THR 200.0084
MET 210.0053
THR 220.0082
CYS 230.0039
ARG 240.0046
ALA 250.0024
ARG 260.0051
SER 270.0091
SER 290.0111
VAL 300.0078
SER 310.0074
TYR 320.0043
MET 330.0030
HIS 340.0025
TRP 350.0039
TYR 360.0034
GLN 370.0030
GLN 380.0017
LYS 390.0022
SER 400.0030
GLY 410.0164
SER 420.0098
SER 430.0042
PRO 440.0050
LYS 450.0055
PRO 460.0055
TRP 470.0049
ILE 480.0050
HIS 490.0048
ALA 500.0038
THR 510.0056
SER 520.0088
ASN 530.0137
LEU 540.0155
ALA 550.0144
SER 560.0372
GLY 570.0303
VAL 580.0150
PRO 590.0042
ALA 600.0139
ARG 610.0155
PHE 620.0095
SER 630.0115
GLY 640.0097
SER 650.0065
GLY 660.0030
SER 670.0062
GLY 680.0098
THR 690.0075
SER 700.0065
TYR 710.0020
SER 720.0038
LEU 730.0053
THR 740.0154
ILE 750.0151
SER 760.0218
ARG 770.0275
VAL 780.0194
GLU 790.0230
ALA 800.0145
GLU 810.0143
ASP 820.0101
ALA 830.0072
ALA 840.0051
THR 850.0031
TYR 860.0026
TYR 870.0031
CYS 880.0037
GLN 890.0038
GLN 900.0034
TRP 910.0033
SER 920.0071
SER 930.0072
HIS 940.0065
PRO 950.0041
PRO 960.0037
THR 970.0040
PHE 980.0063
GLY 990.0063
SER 1000.0058
GLY 1010.0052
THR 1020.0038
LYS 1030.0046
LEU 1040.0064
GLU 1050.0077
ILE 1060.0086
LYS 1070.0106
ARG 1080.0105
ALA 1090.0151
ASP 1100.0220
ALA 1110.0229
ALA 1120.0227
PRO 1130.0171
THR 1140.0160
VAL 1150.0161
SER 1160.0102
ILE 1170.0103
PHE 1180.0114
PRO 1190.0135
PRO 1200.0155
SER 1210.0141
SER 1220.0127
GLU 1230.0146
GLN 1240.0200
LEU 1250.0218
THR 1260.0226
SER 1270.0327
GLY 1280.0359
GLY 1290.0327
ALA 1300.0230
SER 1310.0108
VAL 1320.0099
VAL 1330.0117
CYS 1340.0077
PHE 1350.0076
LEU 1360.0088
ASN 1370.0117
ASN 1380.0118
PHE 1390.0099
TYR 1400.0094
PRO 1410.0077
LYS 1420.0014
ASP 1430.0033
ILE 1440.0133
ASN 1450.0248
VAL 1460.0282
LYS 1470.0220
TRP 1480.0142
LYS 1490.0160
ILE 1500.0114
ASP 1510.0084
GLY 1520.0186
SER 1530.0195
GLU 1540.0281
ARG 1550.0273
GLN 1560.0237
ASN 1570.0284
GLY 1580.0217
VAL 1590.0176
LEU 1600.0155
ASN 1610.0059
SER 1620.0043
TRP 1630.0059
THR 1640.0031
ASP 1650.0027
GLN 1660.0023
ASP 1670.0069
SER 1680.0086
LYS 1690.0062
ASP 1700.0100
SER 1710.0043
THR 1720.0069
TYR 1730.0048
SER 1740.0067
MET 1750.0073
SER 1760.0042
SER 1770.0070
THR 1780.0099
LEU 1790.0185
THR 1800.0192
LEU 1810.0167
THR 1820.0318
LYS 1830.0297
ASP 1840.0288
GLU 1850.0222
TYR 1860.0195
GLU 1870.0177
ARG 1880.0202
HIS 1890.0097
ASN 1900.0044
SER 1910.0068
TYR 1920.0106
THR 1930.0145
CYS 1940.0145
GLU 1950.0233
ALA 1960.0295
THR 1970.0291
HIS 1980.0149
LYS 1990.0182
THR 2000.0344
SER 2010.0461
THR 2020.0441
SER 2030.0446
PRO 2040.0430
ILE 2050.0408
VAL 2060.0158
LYS 2070.0106
SER 2080.0116
PHE 2090.0158
ASN 2100.0106
ARG 2110.0105
ASN 2120.0171
GLU 2130.0148
CYS 2140.0165
GLU 10.0365
VAL 20.0200
GLN 30.0177
LEU 40.0062
VAL 50.0071
GLU 60.0079
SER 70.0068
GLY 80.0073
GLY 90.0067
GLY 100.0087
LEU 110.0077
VAL 120.0064
LYS 130.0076
PRO 140.0078
GLY 150.0080
GLY 160.0041
SER 170.0035
LEU 180.0033
LYS 190.0038
LEU 200.0039
SER 210.0054
CYS 220.0057
ALA 230.0048
ALA 240.0046
SER 250.0101
GLY 260.0095
PHE 270.0079
ILE 280.0105
PHE 290.0082
SER 300.0082
ASP 310.0057
TYR 320.0044
TYR 330.0029
MET 340.0042
TYR 350.0042
TRP 360.0045
VAL 370.0058
ARG 380.0051
GLN 390.0050
THR 400.0140
PRO 410.0238
GLU 420.0363
LYS 430.0201
ARG 440.0205
LEU 450.0136
GLU 460.0061
TRP 470.0062
VAL 480.0073
ALA 490.0037
THR 500.0038
ILE 510.0034
SER 520.0032
ASP 520.0054
GLY 530.0086
ASN 540.0087
SER 550.0049
TYR 560.0050
THR 570.0032
TYR 580.0032
TYR 590.0038
VAL 600.0059
ASP 610.0179
SER 620.0156
VAL 630.0086
LYS 640.0122
GLY 650.0132
ARG 660.0092
PHE 670.0034
THR 680.0046
ILE 690.0037
SER 700.0041
ARG 710.0045
ASP 720.0062
ASN 730.0107
ALA 740.0134
LYS 750.0102
ASN 760.0061
ASN 770.0042
LEU 780.0038
TYR 790.0037
LEU 800.0032
GLN 810.0038
MET 820.0034
SER 820.0052
SER 820.0059
LEU 820.0042
LYS 830.0086
SER 840.0109
GLU 850.0085
ASP 860.0061
THR 870.0082
ALA 880.0044
ILE 890.0040
TYR 900.0045
TYR 910.0059
CYS 920.0058
ALA 930.0049
ARG 940.0053
ASP 950.0044
GLY 960.0068
PRO 970.0074
THR 980.0078
ASP 990.0057
SER 1000.0031
SER 1000.0045
GLY 1000.0060
TYR 1000.0044
GLY 1000.0031
GLY 1000.0014
PHE 1000.0036
GLY 1010.0045
TYR 1020.0073
TRP 1030.0052
GLY 1040.0060
GLN 1050.0064
GLY 1060.0066
THR 1070.0065
LEU 1080.0066
VAL 1090.0074
THR 1100.0080
VAL 1110.0072
SER 1120.0087
GLU 1130.0077
ALA 1140.0079
LYS 1150.0189
THR 1160.0131
THR 1170.0083
PRO 1180.0111
PRO 1190.0118
SER 1200.0157
VAL 1210.0137
TYR 1220.0131
PRO 1230.0143
LEU 1240.0121
ALA 1250.0126
PRO 1260.0131
GLY 1270.0292
SER 1280.0372
ALA 1290.1074
ALA 1300.0740
GLN 1330.0970
THR 1340.0605
ASN 1350.0140
SER 1360.0296
MET 1370.0133
VAL 1380.0184
THR 1390.0131
LEU 1400.0115
GLY 1410.0109
CYS 1420.0084
LEU 1430.0067
VAL 1440.0058
LYS 1450.0068
GLY 1460.0069
TYR 1470.0065
PHE 1480.0072
PRO 1490.0075
GLU 1500.0068
PRO 1510.0058
VAL 1520.0059
THR 1530.0063
VAL 1540.0091
THR 1560.0120
TRP 1570.0117
ASN 1620.0167
SER 1630.0176
GLY 1640.0235
SER 1650.0290
LEU 1660.0202
SER 1670.0253
SER 1680.0200
GLY 1690.0174
VAL 1710.0146
HIS 1720.0124
THR 1730.0131
PHE 1740.0084
PRO 1750.0081
ALA 1760.0072
VAL 1770.0062
LEU 1780.0035
GLN 1790.0126
SER 1800.0421
ASP 1830.0041
LEU 1840.0063
TYR 1850.0064
THR 1860.0074
LEU 1870.0082
SER 1880.0085
SER 1890.0109
SER 1900.0125
VAL 1910.0137
THR 1920.0164
VAL 1930.0133
PRO 1940.0131
SER 1950.0148
SER 1960.0239
PRO 1980.0220
ARG 1990.0149
PRO 2000.0107
SER 2020.0054
GLU 2030.0120
THR 2040.0102
VAL 2050.0099
THR 2060.0124
CYS 2080.0144
ASN 2090.0129
VAL 2100.0113
ALA 2110.0179
HIS 2120.0129
PRO 2130.0179
ALA 2140.0149
SER 2150.0155
SER 2160.0266
THR 2170.0241
LYS 2180.0245
VAL 2190.0269
ASP 2200.0163
LYS 2210.0167
LYS 2220.0164
ILE 2230.0139
VAL 2260.0157
PRO 2270.0169
ARG 2280.0113
ASP 2320.0277
CYS 2330.0259

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.