CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J5L Structure of a Plasmodium falciparum apical membrane antigen 1-Fab F8. 12.19 complex  ***

<R2> analysis for 2608162332391822803

---  normal mode 57  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1479
ILE 4790.0090
PHE 4800.0037
ILE 4810.0054
SER 4820.0056
ASP 4830.0056
ASP 4840.0070
LYS 4850.0035
ASP 4860.0066
SER 4870.0063
LEU 4880.0055
LYS 4890.0077
CYS 4900.0075
PRO 4910.0078
CYS 4920.0067
ASP 4930.0046
PRO 4940.0042
GLU 4950.0050
MET 4960.0059
VAL 4970.0074
SER 4980.0049
GLN 4990.0081
SER 5000.0100
THR 5010.0092
CYS 5020.0107
ARG 5030.0076
PHE 5040.0057
PHE 5050.0053
VAL 5060.0024
CYS 5070.0033
LYS 5080.0042
CYS 5090.0069
VAL 5100.0068
GLU 5110.0077
ARG 5120.0145
SER 20.0061
VAL 30.0062
LEU 40.0040
SER 50.0030
GLN 60.0038
SER 70.0058
PRO 80.0054
ALA 90.0070
ILE 100.0063
LEU 110.0052
SER 120.0057
ALA 130.0052
SER 140.0072
PRO 150.0070
GLY 160.0064
GLU 170.0055
LYS 180.0038
VAL 190.0042
THR 200.0033
MET 210.0036
THR 220.0046
CYS 230.0045
ARG 240.0032
ALA 250.0006
ARG 260.0059
SER 270.0069
SER 290.0030
VAL 300.0010
SER 310.0016
TYR 320.0026
MET 330.0030
HIS 340.0038
TRP 350.0020
TYR 360.0013
GLN 370.0011
GLN 380.0025
LYS 390.0068
SER 400.0110
GLY 410.0171
SER 420.0105
SER 430.0031
PRO 440.0013
LYS 450.0014
PRO 460.0015
TRP 470.0031
ILE 480.0030
HIS 490.0040
ALA 500.0040
THR 510.0038
SER 520.0047
ASN 530.0059
LEU 540.0055
ALA 550.0064
SER 560.0162
GLY 570.0138
VAL 580.0066
PRO 590.0037
ALA 600.0035
ARG 610.0038
PHE 620.0025
SER 630.0025
GLY 640.0037
SER 650.0049
GLY 660.0044
SER 670.0038
GLY 680.0041
THR 690.0024
SER 700.0043
TYR 710.0042
SER 720.0039
LEU 730.0033
THR 740.0031
ILE 750.0031
SER 760.0041
ARG 770.0053
VAL 780.0060
GLU 790.0080
ALA 800.0046
GLU 810.0058
ASP 820.0058
ALA 830.0052
ALA 840.0045
THR 850.0037
TYR 860.0009
TYR 870.0011
CYS 880.0010
GLN 890.0046
GLN 900.0038
TRP 910.0041
SER 920.0051
SER 930.0050
HIS 940.0059
PRO 950.0066
PRO 960.0057
THR 970.0058
PHE 980.0034
GLY 990.0025
SER 1000.0026
GLY 1010.0035
THR 1020.0031
LYS 1030.0040
LEU 1040.0053
GLU 1050.0052
ILE 1060.0052
LYS 1070.0052
ARG 1080.0037
ALA 1090.0045
ASP 1100.0029
ALA 1110.0042
ALA 1120.0052
PRO 1130.0047
THR 1140.0040
VAL 1150.0029
SER 1160.0027
ILE 1170.0069
PHE 1180.0101
PRO 1190.0159
PRO 1200.0129
SER 1210.0127
SER 1220.0205
GLU 1230.0180
GLN 1240.0036
LEU 1250.0211
THR 1260.0496
SER 1270.0553
GLY 1280.0409
GLY 1290.0253
ALA 1300.0101
SER 1310.0135
VAL 1320.0144
VAL 1330.0141
CYS 1340.0062
PHE 1350.0021
LEU 1360.0009
ASN 1370.0044
ASN 1380.0043
PHE 1390.0045
TYR 1400.0032
PRO 1410.0031
LYS 1420.0045
ASP 1430.0040
ILE 1440.0035
ASN 1450.0050
VAL 1460.0043
LYS 1470.0062
TRP 1480.0096
LYS 1490.0078
ILE 1500.0127
ASP 1510.0115
GLY 1520.0051
SER 1530.0097
GLU 1540.0217
ARG 1550.0136
GLN 1560.0182
ASN 1570.0227
GLY 1580.0183
VAL 1590.0183
LEU 1600.0195
ASN 1610.0073
SER 1620.0048
TRP 1630.0049
THR 1640.0061
ASP 1650.0045
GLN 1660.0028
ASP 1670.0070
SER 1680.0039
LYS 1690.0106
ASP 1700.0059
SER 1710.0015
THR 1720.0028
TYR 1730.0034
SER 1740.0031
MET 1750.0027
SER 1760.0076
SER 1770.0101
THR 1780.0150
LEU 1790.0226
THR 1800.0176
LEU 1810.0157
THR 1820.0331
LYS 1830.0215
ASP 1840.0233
GLU 1850.0168
TYR 1860.0088
GLU 1870.0021
ARG 1880.0061
HIS 1890.0105
ASN 1900.0126
SER 1910.0110
TYR 1920.0112
THR 1930.0097
CYS 1940.0052
GLU 1950.0016
ALA 1960.0031
THR 1970.0065
HIS 1980.0051
LYS 1990.0045
THR 2000.0037
SER 2010.0100
THR 2020.0204
SER 2030.0093
PRO 2040.0085
ILE 2050.0079
VAL 2060.0065
LYS 2070.0072
SER 2080.0105
PHE 2090.0100
ASN 2100.0087
ARG 2110.0081
ASN 2120.0100
GLU 2130.0117
CYS 2140.0203
GLU 10.0283
VAL 20.0151
GLN 30.0148
LEU 40.0020
VAL 50.0018
GLU 60.0021
SER 70.0053
GLY 80.0051
GLY 90.0040
GLY 100.0104
LEU 110.0100
VAL 120.0122
LYS 130.0182
PRO 140.0162
GLY 150.0167
GLY 160.0075
SER 170.0062
LEU 180.0082
LYS 190.0068
LEU 200.0052
SER 210.0048
CYS 220.0049
ALA 230.0051
ALA 240.0055
SER 250.0021
GLY 260.0044
PHE 270.0055
ILE 280.0092
PHE 290.0063
SER 300.0060
ASP 310.0036
TYR 320.0005
TYR 330.0042
MET 340.0043
TYR 350.0057
TRP 360.0060
VAL 370.0044
ARG 380.0037
GLN 390.0048
THR 400.0059
PRO 410.0091
GLU 420.0120
LYS 430.0087
ARG 440.0087
LEU 450.0069
GLU 460.0061
TRP 470.0066
VAL 480.0062
ALA 490.0087
THR 500.0081
ILE 510.0067
SER 520.0083
ASP 520.0061
GLY 530.0101
ASN 540.0135
SER 550.0074
TYR 560.0104
THR 570.0103
TYR 580.0084
TYR 590.0076
VAL 600.0073
ASP 610.0154
SER 620.0142
VAL 630.0095
LYS 640.0132
GLY 650.0154
ARG 660.0111
PHE 670.0066
THR 680.0076
ILE 690.0071
SER 700.0066
ARG 710.0030
ASP 720.0093
ASN 730.0145
ALA 740.0222
LYS 750.0208
ASN 760.0092
ASN 770.0062
LEU 780.0033
TYR 790.0050
LEU 800.0068
GLN 810.0072
MET 820.0071
SER 820.0056
SER 820.0062
LEU 820.0072
LYS 830.0124
SER 840.0155
GLU 850.0121
ASP 860.0069
THR 870.0092
ALA 880.0038
ILE 890.0044
TYR 900.0038
TYR 910.0026
CYS 920.0033
ALA 930.0042
ARG 940.0046
ASP 950.0038
GLY 960.0061
PRO 970.0105
THR 980.0113
ASP 990.0119
SER 1000.0055
SER 1000.0042
GLY 1000.0032
TYR 1000.0031
GLY 1000.0035
GLY 1000.0044
PHE 1000.0052
GLY 1010.0056
TYR 1020.0064
TRP 1030.0021
GLY 1040.0014
GLN 1050.0009
GLY 1060.0047
THR 1070.0043
LEU 1080.0045
VAL 1090.0072
THR 1100.0088
VAL 1110.0101
SER 1120.0097
GLU 1130.0083
ALA 1140.0098
LYS 1150.0311
THR 1160.0164
THR 1170.0081
PRO 1180.0101
PRO 1190.0106
SER 1200.0123
VAL 1210.0082
TYR 1220.0093
PRO 1230.0125
LEU 1240.0085
ALA 1250.0058
PRO 1260.0052
GLY 1270.0131
SER 1280.0249
ALA 1290.0702
ALA 1300.0368
GLN 1330.0349
THR 1340.0271
ASN 1350.0254
SER 1360.0146
MET 1370.0070
VAL 1380.0141
THR 1390.0071
LEU 1400.0059
GLY 1410.0083
CYS 1420.0085
LEU 1430.0078
VAL 1440.0071
LYS 1450.0074
GLY 1460.0042
TYR 1470.0034
PHE 1480.0023
PRO 1490.0019
GLU 1500.0021
PRO 1510.0026
VAL 1520.0067
THR 1530.0086
VAL 1540.0087
THR 1560.0102
TRP 1570.0098
ASN 1620.0136
SER 1630.0115
GLY 1640.0191
SER 1650.0243
LEU 1660.0251
SER 1670.0304
SER 1680.0420
GLY 1690.0312
VAL 1710.0130
HIS 1720.0118
THR 1730.0100
PHE 1740.0022
PRO 1750.0048
ALA 1760.0057
VAL 1770.0092
LEU 1780.0064
GLN 1790.0098
SER 1800.0197
ASP 1830.0113
LEU 1840.0054
TYR 1850.0049
THR 1860.0061
LEU 1870.0054
SER 1880.0050
SER 1890.0089
SER 1900.0091
VAL 1910.0090
THR 1920.0166
VAL 1930.0142
PRO 1940.0100
SER 1950.0111
SER 1960.0161
PRO 1980.0120
ARG 1990.0175
PRO 2000.0264
SER 2020.0535
GLU 2030.0413
THR 2040.0223
VAL 2050.0091
THR 2060.0077
CYS 2080.0108
ASN 2090.0070
VAL 2100.0095
ALA 2110.0177
HIS 2120.0143
PRO 2130.0175
ALA 2140.0186
SER 2150.0185
SER 2160.0272
THR 2170.0221
LYS 2180.0196
VAL 2190.0210
ASP 2200.0096
LYS 2210.0136
LYS 2220.0126
ILE 2230.0109
VAL 2260.0130
PRO 2270.0278
ARG 2280.0334
ASP 2320.1479
CYS 2330.0596

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.