CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J5L Structure of a Plasmodium falciparum apical membrane antigen 1-Fab F8. 12.19 complex  ***

<R2> analysis for 2608162332391822803

---  normal mode 68  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1211
ILE 4790.0122
PHE 4800.0079
ILE 4810.0051
SER 4820.0020
ASP 4830.0088
ASP 4840.0150
LYS 4850.0069
ASP 4860.0066
SER 4870.0057
LEU 4880.0032
LYS 4890.0026
CYS 4900.0025
PRO 4910.0021
CYS 4920.0013
ASP 4930.0016
PRO 4940.0060
GLU 4950.0079
MET 4960.0095
VAL 4970.0151
SER 4980.0081
GLN 4990.0058
SER 5000.0198
THR 5010.0114
CYS 5020.0060
ARG 5030.0084
PHE 5040.0076
PHE 5050.0107
VAL 5060.0064
CYS 5070.0032
LYS 5080.0022
CYS 5090.0031
VAL 5100.0049
GLU 5110.0075
ARG 5120.0209
SER 20.0101
VAL 30.0125
LEU 40.0098
SER 50.0041
GLN 60.0035
SER 70.0039
PRO 80.0060
ALA 90.0051
ILE 100.0052
LEU 110.0094
SER 120.0084
ALA 130.0090
SER 140.0180
PRO 150.0182
GLY 160.0190
GLU 170.0110
LYS 180.0075
VAL 190.0140
THR 200.0115
MET 210.0073
THR 220.0047
CYS 230.0049
ARG 240.0050
ALA 250.0065
ARG 260.0116
SER 270.0135
SER 290.0064
VAL 300.0067
SER 310.0062
TYR 320.0058
MET 330.0048
HIS 340.0038
TRP 350.0012
TYR 360.0008
GLN 370.0020
GLN 380.0014
LYS 390.0034
SER 400.0050
GLY 410.0048
SER 420.0037
SER 430.0031
PRO 440.0018
LYS 450.0014
PRO 460.0023
TRP 470.0038
ILE 480.0025
HIS 490.0032
ALA 500.0043
THR 510.0040
SER 520.0030
ASN 530.0051
LEU 540.0034
ALA 550.0032
SER 560.0170
GLY 570.0125
VAL 580.0085
PRO 590.0157
ALA 600.0180
ARG 610.0164
PHE 620.0116
SER 630.0110
GLY 640.0104
SER 650.0048
GLY 660.0070
SER 670.0084
GLY 680.0087
THR 690.0079
SER 700.0079
TYR 710.0053
SER 720.0058
LEU 730.0069
THR 740.0145
ILE 750.0118
SER 760.0107
ARG 770.0096
VAL 780.0068
GLU 790.0126
ALA 800.0046
GLU 810.0052
ASP 820.0065
ALA 830.0072
ALA 840.0047
THR 850.0026
TYR 860.0023
TYR 870.0023
CYS 880.0037
GLN 890.0059
GLN 900.0057
TRP 910.0046
SER 920.0073
SER 930.0066
HIS 940.0050
PRO 950.0051
PRO 960.0057
THR 970.0077
PHE 980.0057
GLY 990.0065
SER 1000.0055
GLY 1010.0042
THR 1020.0040
LYS 1030.0040
LEU 1040.0048
GLU 1050.0045
ILE 1060.0059
LYS 1070.0074
ARG 1080.0085
ALA 1090.0096
ASP 1100.0119
ALA 1110.0095
ALA 1120.0067
PRO 1130.0029
THR 1140.0054
VAL 1150.0010
SER 1160.0062
ILE 1170.0055
PHE 1180.0050
PRO 1190.0042
PRO 1200.0033
SER 1210.0034
SER 1220.0177
GLU 1230.0157
GLN 1240.0073
LEU 1250.0162
THR 1260.0253
SER 1270.0152
GLY 1280.0099
GLY 1290.0060
ALA 1300.0066
SER 1310.0105
VAL 1320.0080
VAL 1330.0063
CYS 1340.0026
PHE 1350.0033
LEU 1360.0037
ASN 1370.0075
ASN 1380.0072
PHE 1390.0050
TYR 1400.0037
PRO 1410.0028
LYS 1420.0050
ASP 1430.0102
ILE 1440.0121
ASN 1450.0208
VAL 1460.0135
LYS 1470.0145
TRP 1480.0132
LYS 1490.0075
ILE 1500.0226
ASP 1510.0314
GLY 1520.0380
SER 1530.0119
GLU 1540.0300
ARG 1550.0526
GLN 1560.0803
ASN 1570.1211
GLY 1580.0467
VAL 1590.0289
LEU 1600.0197
ASN 1610.0165
SER 1620.0186
TRP 1630.0203
THR 1640.0107
ASP 1650.0049
GLN 1660.0054
ASP 1670.0155
SER 1680.0181
LYS 1690.0467
ASP 1700.0137
SER 1710.0083
THR 1720.0093
TYR 1730.0078
SER 1740.0093
MET 1750.0107
SER 1760.0084
SER 1770.0059
THR 1780.0055
LEU 1790.0195
THR 1800.0162
LEU 1810.0165
THR 1820.0337
LYS 1830.0372
ASP 1840.0493
GLU 1850.0302
TYR 1860.0252
GLU 1870.0289
ARG 1880.0299
HIS 1890.0130
ASN 1900.0064
SER 1910.0128
TYR 1920.0080
THR 1930.0092
CYS 1940.0089
GLU 1950.0099
ALA 1960.0136
THR 1970.0182
HIS 1980.0106
LYS 1990.0127
THR 2000.0247
SER 2010.0392
THR 2020.0522
SER 2030.0397
PRO 2040.0312
ILE 2050.0250
VAL 2060.0097
LYS 2070.0094
SER 2080.0101
PHE 2090.0095
ASN 2100.0097
ARG 2110.0144
ASN 2120.0182
GLU 2130.0027
CYS 2140.0174
GLU 10.0071
VAL 20.0022
GLN 30.0066
LEU 40.0045
VAL 50.0040
GLU 60.0037
SER 70.0044
GLY 80.0059
GLY 90.0053
GLY 100.0064
LEU 110.0054
VAL 120.0058
LYS 130.0048
PRO 140.0057
GLY 150.0060
GLY 160.0059
SER 170.0040
LEU 180.0044
LYS 190.0040
LEU 200.0023
SER 210.0035
CYS 220.0040
ALA 230.0031
ALA 240.0036
SER 250.0076
GLY 260.0090
PHE 270.0078
ILE 280.0114
PHE 290.0078
SER 300.0069
ASP 310.0091
TYR 320.0065
TYR 330.0048
MET 340.0040
TYR 350.0035
TRP 360.0033
VAL 370.0012
ARG 380.0009
GLN 390.0021
THR 400.0052
PRO 410.0055
GLU 420.0108
LYS 430.0064
ARG 440.0063
LEU 450.0032
GLU 460.0032
TRP 470.0021
VAL 480.0015
ALA 490.0032
THR 500.0041
ILE 510.0052
SER 520.0060
ASP 520.0066
GLY 530.0085
ASN 540.0089
SER 550.0063
TYR 560.0062
THR 570.0063
TYR 580.0027
TYR 590.0032
VAL 600.0035
ASP 610.0026
SER 620.0015
VAL 630.0012
LYS 640.0012
GLY 650.0014
ARG 660.0013
PHE 670.0030
THR 680.0051
ILE 690.0054
SER 700.0132
ARG 710.0079
ASP 720.0119
ASN 730.0083
ALA 740.0251
LYS 750.0275
ASN 760.0088
ASN 770.0063
LEU 780.0048
TYR 790.0051
LEU 800.0049
GLN 810.0058
MET 820.0034
SER 820.0029
SER 820.0033
LEU 820.0045
LYS 830.0055
SER 840.0070
GLU 850.0084
ASP 860.0068
THR 870.0085
ALA 880.0049
ILE 890.0032
TYR 900.0034
TYR 910.0028
CYS 920.0037
ALA 930.0042
ARG 940.0047
ASP 950.0038
GLY 960.0053
PRO 970.0115
THR 980.0132
ASP 990.0157
SER 1000.0063
SER 1000.0043
GLY 1000.0026
TYR 1000.0034
GLY 1000.0025
GLY 1000.0032
PHE 1000.0031
GLY 1010.0048
TYR 1020.0056
TRP 1030.0037
GLY 1040.0043
GLN 1050.0046
GLY 1060.0034
THR 1070.0049
LEU 1080.0056
VAL 1090.0084
THR 1100.0084
VAL 1110.0083
SER 1120.0100
GLU 1130.0148
ALA 1140.0051
LYS 1150.0151
THR 1160.0089
THR 1170.0112
PRO 1180.0079
PRO 1190.0085
SER 1200.0117
VAL 1210.0048
TYR 1220.0047
PRO 1230.0048
LEU 1240.0042
ALA 1250.0028
PRO 1260.0043
GLY 1270.0153
SER 1280.0098
ALA 1290.0228
ALA 1300.0226
GLN 1330.0339
THR 1340.0175
ASN 1350.0051
SER 1360.0079
MET 1370.0097
VAL 1380.0103
THR 1390.0072
LEU 1400.0082
GLY 1410.0106
CYS 1420.0110
LEU 1430.0107
VAL 1440.0117
LYS 1450.0113
GLY 1460.0099
TYR 1470.0089
PHE 1480.0041
PRO 1490.0029
GLU 1500.0046
PRO 1510.0113
VAL 1520.0110
THR 1530.0160
VAL 1540.0187
THR 1560.0251
TRP 1570.0145
ASN 1620.0195
SER 1630.0374
GLY 1640.0473
SER 1650.0403
LEU 1660.0143
SER 1670.0232
SER 1680.0303
GLY 1690.0269
VAL 1710.0181
HIS 1720.0129
THR 1730.0145
PHE 1740.0151
PRO 1750.0195
ALA 1760.0152
VAL 1770.0127
LEU 1780.0097
GLN 1790.0094
SER 1800.0121
ASP 1830.0059
LEU 1840.0067
TYR 1850.0080
THR 1860.0080
LEU 1870.0100
SER 1880.0108
SER 1890.0126
SER 1900.0115
VAL 1910.0112
THR 1920.0099
VAL 1930.0075
PRO 1940.0165
SER 1950.0215
SER 1960.0279
PRO 1980.0107
ARG 1990.0149
PRO 2000.0220
SER 2020.0348
GLU 2030.0271
THR 2040.0110
VAL 2050.0059
THR 2060.0028
CYS 2080.0128
ASN 2090.0143
VAL 2100.0171
ALA 2110.0075
HIS 2120.0029
PRO 2130.0131
ALA 2140.0151
SER 2150.0184
SER 2160.0192
THR 2170.0061
LYS 2180.0054
VAL 2190.0127
ASP 2200.0090
LYS 2210.0067
LYS 2220.0028
ILE 2230.0042
VAL 2260.0161
PRO 2270.0088
ARG 2280.0090
ASP 2320.0461
CYS 2330.0418

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.