Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
Some cleaning from time to time
Sorry for the inconvenience.

* 2J5L Structure of a Plasmodium falciparum apical membrane antigen 1-Fab F8. 12.19 complex *

CA strain for 2608162332391822803

--- normal mode 7 ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA i CA i+1 vari
ILE 479 PHE 480 0.0002

PHE 480 ILE 481 0.0001

ILE 481 SER 482 -0.0033

SER 482 ASP 483 -0.0001

ASP 483 ASP 484 0.0000

ASP 484 LYS 485 0.0088

LYS 485 ASP 486 -0.0002

ASP 486 SER 487 -0.0002

SER 487 LEU 488 -0.0051

LEU 488 LYS 489 0.0001

LYS 489 CYS 490 -0.0003

CYS 490 PRO 491 -0.0069

PRO 491 CYS 492 0.0002

CYS 492 ASP 493 -0.0003

ASP 493 PRO 494 0.0027

PRO 494 GLU 495 0.0001

GLU 495 MET 496 0.0001

MET 496 VAL 497 0.0077

VAL 497 SER 498 0.0000

SER 498 GLN 499 -0.0002

GLN 499 SER 500 0.0047

SER 500 THR 501 0.0000

THR 501 CYS 502 -0.0002

CYS 502 ARG 503 -0.0044

ARG 503 PHE 504 0.0001

PHE 504 PHE 505 -0.0001

PHE 505 VAL 506 -0.0162

VAL 506 CYS 507 0.0001

CYS 507 LYS 508 -0.0002

LYS 508 CYS 509 -0.0046

CYS 509 VAL 510 0.0003

VAL 510 GLU 511 -0.0002

GLU 511 ARG 512 0.0046

ARG 512 SER 2 -0.0194

SER 2 VAL 3 -0.0000

VAL 3 LEU 4 0.0003

LEU 4 SER 5 -0.0248

SER 5 GLN 6 -0.0002

GLN 6 SER 7 -0.0000

SER 7 PRO 8 -0.0848

PRO 8 ALA 9 0.0000

ALA 9 ILE 10 0.0000

ILE 10 LEU 11 0.0414

LEU 11 SER 12 -0.0003

SER 12 ALA 13 0.0002

ALA 13 SER 14 0.0293

SER 14 PRO 15 0.0004

PRO 15 GLY 16 0.0001

GLY 16 GLU 17 0.0217

GLU 17 LYS 18 -0.0003

LYS 18 VAL 19 0.0002

VAL 19 THR 20 0.0059

THR 20 MET 21 0.0003

MET 21 THR 22 -0.0002

THR 22 CYS 23 0.0022

CYS 23 ARG 24 -0.0003

ARG 24 ALA 25 -0.0001

ALA 25 ARG 26 -0.0080

ARG 26 SER 27 -0.0001

SER 27 SER 29 0.0009

SER 29 VAL 30 -0.0002

VAL 30 SER 31 0.0000

SER 31 TYR 32 0.0007

TYR 32 MET 33 -0.0004

MET 33 HIS 34 -0.0000

HIS 34 TRP 35 0.0081

TRP 35 TYR 36 -0.0000

TYR 36 GLN 37 0.0001

GLN 37 GLN 38 0.0063

GLN 38 LYS 39 0.0000

LYS 39 SER 40 -0.0001

SER 40 GLY 41 0.0345

GLY 41 SER 42 0.0000

SER 42 SER 43 -0.0003

SER 43 PRO 44 0.0002

PRO 44 LYS 45 0.0004

LYS 45 PRO 46 -0.0001

PRO 46 TRP 47 -0.0088

TRP 47 ILE 48 0.0001

ILE 48 HIS 49 0.0004

HIS 49 ALA 50 0.0062

ALA 50 THR 51 -0.0004

THR 51 SER 52 -0.0000

SER 52 ASN 53 -0.0031

ASN 53 LEU 54 0.0003

LEU 54 ALA 55 0.0004

ALA 55 SER 56 0.0016

SER 56 GLY 57 -0.0002

GLY 57 VAL 58 0.0000

VAL 58 PRO 59 -0.0022

PRO 59 ALA 60 -0.0004

ALA 60 ARG 61 0.0002

ARG 61 PHE 62 0.0087

PHE 62 SER 63 0.0004

SER 63 GLY 64 -0.0002

GLY 64 SER 65 0.0460

SER 65 GLY 66 -0.0002

GLY 66 SER 67 0.0001

SER 67 GLY 68 0.0192

GLY 68 THR 69 0.0001

THR 69 SER 70 0.0001

SER 70 TYR 71 0.0099

TYR 71 SER 72 -0.0003

SER 72 LEU 73 0.0000

LEU 73 THR 74 0.0111

THR 74 ILE 75 0.0002

ILE 75 SER 76 0.0002

SER 76 ARG 77 0.0123

ARG 77 VAL 78 0.0003

VAL 78 GLU 79 0.0001

GLU 79 ALA 80 0.0472

ALA 80 GLU 81 0.0004

GLU 81 ASP 82 -0.0001

ASP 82 ALA 83 -0.0168

ALA 83 ALA 84 -0.0001

ALA 84 THR 85 0.0002

THR 85 TYR 86 -0.0113

TYR 86 TYR 87 0.0003

TYR 87 CYS 88 0.0001

CYS 88 GLN 89 -0.0140

GLN 89 GLN 90 -0.0001

GLN 90 TRP 91 0.0002

TRP 91 SER 92 -0.0011

SER 92 SER 93 -0.0002

SER 93 HIS 94 -0.0001

HIS 94 PRO 95 -0.0011

PRO 95 PRO 96 -0.0003

PRO 96 THR 97 -0.0002

THR 97 PHE 98 -0.0215

PHE 98 GLY 99 0.0002

GLY 99 SER 100 0.0001

SER 100 GLY 101 -0.0115

GLY 101 THR 102 0.0000

THR 102 LYS 103 -0.0002

LYS 103 LEU 104 0.0096

LEU 104 GLU 105 0.0001

GLU 105 ILE 106 -0.0002

ILE 106 LYS 107 0.0226

LYS 107 ARG 108 0.0002

ARG 108 ALA 109 -0.0003

ALA 109 ASP 110 -0.0099

ASP 110 ALA 111 0.0000

ALA 111 ALA 112 -0.0000

ALA 112 PRO 113 -0.0126

PRO 113 THR 114 0.0001

THR 114 VAL 115 -0.0001

VAL 115 SER 116 -0.0073

SER 116 ILE 117 -0.0002

ILE 117 PHE 118 0.0004

PHE 118 PRO 119 0.0074

PRO 119 PRO 120 0.0001

PRO 120 SER 121 0.0001

SER 121 SER 122 0.0040

SER 122 GLU 123 -0.0000

GLU 123 GLN 124 0.0001

GLN 124 LEU 125 0.0049

LEU 125 THR 126 0.0004

THR 126 SER 127 0.0001

SER 127 GLY 128 0.0004

GLY 128 GLY 129 -0.0001

GLY 129 ALA 130 -0.0001

ALA 130 SER 131 -0.0013

SER 131 VAL 132 -0.0000

VAL 132 VAL 133 -0.0004

VAL 133 CYS 134 0.0126

CYS 134 PHE 135 -0.0006

PHE 135 LEU 136 0.0001

LEU 136 ASN 137 0.0472

ASN 137 ASN 138 -0.0001

ASN 138 PHE 139 -0.0001

PHE 139 TYR 140 -0.0389

TYR 140 PRO 141 0.0003

PRO 141 LYS 142 -0.0007

LYS 142 ASP 143 -0.0668

ASP 143 ILE 144 -0.0000

ILE 144 ASN 145 -0.0002

ASN 145 VAL 146 -0.0399

VAL 146 LYS 147 -0.0000

LYS 147 TRP 148 -0.0002

TRP 148 LYS 149 -0.0125

LYS 149 ILE 150 0.0001

ILE 150 ASP 151 0.0001

ASP 151 GLY 152 0.0023

GLY 152 SER 153 0.0000

SER 153 GLU 154 0.0000

GLU 154 ARG 155 -0.0059

ARG 155 GLN 156 -0.0002

GLN 156 ASN 157 0.0002

ASN 157 GLY 158 -0.0016

GLY 158 VAL 159 -0.0001

VAL 159 LEU 160 0.0000

LEU 160 ASN 161 -0.0268

ASN 161 SER 162 0.0002

SER 162 TRP 163 -0.0002

TRP 163 THR 164 -0.0168

THR 164 ASP 165 -0.0001

ASP 165 GLN 166 -0.0001

GLN 166 ASP 167 -0.0433

ASP 167 SER 168 0.0001

SER 168 LYS 169 0.0002

LYS 169 ASP 170 0.0598

ASP 170 SER 171 -0.0002

SER 171 THR 172 -0.0002

THR 172 TYR 173 0.0072

TYR 173 SER 174 -0.0001

SER 174 MET 175 0.0001

MET 175 SER 176 -0.0088

SER 176 SER 177 -0.0001

SER 177 THR 178 -0.0003

THR 178 LEU 179 -0.0050

LEU 179 THR 180 -0.0004

THR 180 LEU 181 -0.0002

LEU 181 THR 182 -0.0051

THR 182 LYS 183 -0.0004

LYS 183 ASP 184 0.0003

ASP 184 GLU 185 0.0033

GLU 185 TYR 186 0.0003

TYR 186 GLU 187 0.0001

GLU 187 ARG 188 0.0006

ARG 188 HIS 189 -0.0003

HIS 189 ASN 190 0.0001

ASN 190 SER 191 -0.0012

SER 191 TYR 192 0.0002

TYR 192 THR 193 -0.0003

THR 193 CYS 194 -0.0049

CYS 194 GLU 195 0.0002

GLU 195 ALA 196 -0.0001

ALA 196 THR 197 -0.0075

THR 197 HIS 198 0.0000

HIS 198 LYS 199 -0.0000

LYS 199 THR 200 0.0083

THR 200 SER 201 -0.0001

SER 201 THR 202 -0.0001

THR 202 SER 203 0.0013

SER 203 PRO 204 -0.0002

PRO 204 ILE 205 0.0004

ILE 205 VAL 206 -0.0177

VAL 206 LYS 207 0.0001

LYS 207 SER 208 0.0002

SER 208 PHE 209 -0.0109

PHE 209 ASN 210 0.0001

ASN 210 ARG 211 -0.0003

ARG 211 ASN 212 -0.0024

ASN 212 GLU 213 -0.0002

GLU 213 CYS 214 -0.0001

CYS 214 GLU 1 0.1536

GLU 1 VAL 2 -0.0003

VAL 2 GLN 3 -0.0002

GLN 3 LEU 4 0.0070

LEU 4 VAL 5 -0.0001

VAL 5 GLU 6 -0.0001

GLU 6 SER 7 0.0107

SER 7 GLY 8 -0.0001

GLY 8 GLY 9 -0.0002

GLY 9 GLY 10 0.1378

GLY 10 LEU 11 -0.0004

LEU 11 VAL 12 0.0001

VAL 12 LYS 13 0.0368

LYS 13 PRO 14 -0.0000

PRO 14 GLY 15 -0.0000

GLY 15 GLY 16 -0.0110

GLY 16 SER 17 -0.0000

SER 17 LEU 18 -0.0000

LEU 18 LYS 19 -0.0101

LYS 19 LEU 20 -0.0002

LEU 20 SER 21 -0.0001

SER 21 CYS 22 -0.0113

CYS 22 ALA 23 -0.0003

ALA 23 ALA 24 0.0002

ALA 24 SER 25 -0.0018

SER 25 GLY 26 -0.0002

GLY 26 PHE 27 -0.0001

PHE 27 ILE 28 0.0012

ILE 28 PHE 29 0.0001

PHE 29 SER 30 -0.0002

SER 30 ASP 31 -0.0014

ASP 31 TYR 32 0.0001

TYR 32 TYR 33 0.0001

TYR 33 MET 34 0.0141

MET 34 TYR 35 0.0001

TYR 35 TRP 36 0.0003

TRP 36 VAL 37 -0.0019

VAL 37 ARG 38 0.0001

ARG 38 GLN 39 0.0000

GLN 39 THR 40 -0.0093

THR 40 PRO 41 -0.0000

PRO 41 GLU 42 0.0001

GLU 42 LYS 43 -0.0010

LYS 43 ARG 44 0.0002

ARG 44 LEU 45 -0.0002

LEU 45 GLU 46 -0.0060

GLU 46 TRP 47 -0.0004

TRP 47 VAL 48 0.0006

VAL 48 ALA 49 -0.0013

ALA 49 THR 50 0.0002

THR 50 ILE 51 0.0000

ILE 51 SER 52 -0.0007

SER 52 ASP 52 0.0000

ASP 52 GLY 53 -0.0001

GLY 53 ASN 54 -0.0000

ASN 54 SER 55 -0.0032

SER 55 TYR 56 -0.0001

TYR 56 THR 57 -0.0001

THR 57 TYR 58 -0.0056

TYR 58 TYR 59 0.0002

TYR 59 VAL 60 0.0000

VAL 60 ASP 61 -0.0024

ASP 61 SER 62 -0.0000

SER 62 VAL 63 0.0002

VAL 63 LYS 64 0.0085

LYS 64 GLY 65 -0.0002

GLY 65 ARG 66 0.0000

ARG 66 PHE 67 -0.0067

PHE 67 THR 68 0.0002

THR 68 ILE 69 -0.0003

ILE 69 SER 70 -0.0157

SER 70 ARG 71 -0.0004

ARG 71 ASP 72 0.0001

ASP 72 ASN 73 -0.0035

ASN 73 ALA 74 0.0000

ALA 74 LYS 75 0.0003

LYS 75 ASN 76 -0.0024

ASN 76 ASN 77 -0.0000

ASN 77 LEU 78 0.0000

LEU 78 TYR 79 -0.0107

TYR 79 LEU 80 -0.0002

LEU 80 GLN 81 0.0003

GLN 81 MET 82 -0.0269

MET 82 SER 82 -0.0000

SER 82 SER 82 0.0001

SER 82 LEU 82 0.0000

LEU 82 LYS 83 -0.0004

LYS 83 SER 84 0.0003

SER 84 GLU 85 -0.0142

GLU 85 ASP 86 0.0000

ASP 86 THR 87 0.0001

THR 87 ALA 88 -0.0016

ALA 88 ILE 89 0.0000

ILE 89 TYR 90 0.0001

TYR 90 TYR 91 0.0013

TYR 91 CYS 92 -0.0001

CYS 92 ALA 93 -0.0003

ALA 93 ARG 94 0.0157

ARG 94 ASP 95 -0.0001

ASP 95 GLY 96 0.0003

GLY 96 PRO 97 0.0111

PRO 97 THR 98 0.0004

THR 98 ASP 99 -0.0001

ASP 99 SER 100 0.0017

SER 100 SER 100 -0.0001

SER 100 GLY 100 0.0002

GLY 100 TYR 100 0.0002

TYR 100 GLY 100 -0.0000

GLY 100 GLY 100 -0.0000

GLY 100 PHE 100 0.0001

PHE 100 GLY 101 -0.0000

GLY 101 TYR 102 -0.0002

TYR 102 TRP 103 0.0161

TRP 103 GLY 104 -0.0002

GLY 104 GLN 105 0.0001

GLN 105 GLY 106 0.0235

GLY 106 THR 107 0.0001

THR 107 LEU 108 0.0000

LEU 108 VAL 109 0.0347

VAL 109 THR 110 0.0000

THR 110 VAL 111 -0.0002

VAL 111 SER 112 -0.0452

SER 112 GLU 113 0.0002

GLU 113 ALA 114 -0.0000

ALA 114 LYS 115 -0.0916

LYS 115 THR 116 -0.0001

THR 116 THR 117 0.0000

THR 117 PRO 118 -0.0605

PRO 118 PRO 119 -0.0002

PRO 119 SER 120 0.0001

SER 120 VAL 121 -0.0470

VAL 121 TYR 122 0.0003

TYR 122 PRO 123 0.0001

PRO 123 LEU 124 -0.0096

LEU 124 ALA 125 -0.0000

ALA 125 PRO 126 -0.0001

PRO 126 GLY 127 0.0103

GLY 127 SER 128 0.0001

SER 128 ALA 129 -0.0002

ALA 129 ALA 130 0.0050

ALA 130 GLN 133 -0.0164

GLN 133 THR 134 -0.0001

THR 134 ASN 135 0.0001

ASN 135 SER 136 -0.0033

SER 136 MET 137 -0.0002

MET 137 VAL 138 0.0001

VAL 138 THR 139 -0.0041

THR 139 LEU 140 0.0001

LEU 140 GLY 141 -0.0001

GLY 141 CYS 142 -0.0187

CYS 142 LEU 143 0.0003

LEU 143 VAL 144 0.0002

VAL 144 LYS 145 -0.0169

LYS 145 GLY 146 -0.0002

GLY 146 TYR 147 0.0003

TYR 147 PHE 148 -0.0413

PHE 148 PRO 149 -0.0002

PRO 149 GLU 150 -0.0000

GLU 150 PRO 151 0.0705

PRO 151 VAL 152 0.0003

VAL 152 THR 153 -0.0003

THR 153 VAL 154 0.0558

VAL 154 THR 156 0.0146

THR 156 TRP 157 0.0001

TRP 157 ASN 162 0.0056

ASN 162 SER 163 0.0004

SER 163 GLY 164 0.0001

GLY 164 SER 165 0.0007

SER 165 LEU 166 0.0002

LEU 166 SER 167 0.0000

SER 167 SER 168 -0.0042

SER 168 GLY 169 -0.0000

GLY 169 VAL 171 -0.0002

VAL 171 HIS 172 0.0000

HIS 172 THR 173 0.0003

THR 173 PHE 174 0.0131

PHE 174 PRO 175 -0.0005

PRO 175 ALA 176 -0.0001

ALA 176 VAL 177 0.0050

VAL 177 LEU 178 -0.0002

LEU 178 GLN 179 -0.0002

GLN 179 SER 180 -0.0086

SER 180 ASP 183 -0.0254

ASP 183 LEU 184 -0.0002

LEU 184 TYR 185 0.0002

TYR 185 THR 186 -0.0322

THR 186 LEU 187 0.0002

LEU 187 SER 188 0.0001

SER 188 SER 189 -0.0076

SER 189 SER 190 0.0000

SER 190 VAL 191 0.0003

VAL 191 THR 192 0.0045

THR 192 VAL 193 0.0001

VAL 193 PRO 194 -0.0002

PRO 194 SER 195 0.0044

SER 195 SER 196 0.0000

SER 196 PRO 198 -0.0014

PRO 198 ARG 199 -0.0002

ARG 199 PRO 200 -0.0000

PRO 200 SER 202 -0.0068

SER 202 GLU 203 -0.0001

GLU 203 THR 204 -0.0001

THR 204 VAL 205 0.0058

VAL 205 THR 206 -0.0000

THR 206 CYS 208 0.0119

CYS 208 ASN 209 -0.0003

ASN 209 VAL 210 0.0000

VAL 210 ALA 211 0.0211

ALA 211 HIS 212 0.0000

HIS 212 PRO 213 0.0002

PRO 213 ALA 214 0.0252

ALA 214 SER 215 0.0001

SER 215 SER 216 0.0001

SER 216 THR 217 0.0239

THR 217 LYS 218 -0.0002

LYS 218 VAL 219 0.0002

VAL 219 ASP 220 -0.0024

ASP 220 LYS 221 -0.0002

LYS 221 LYS 222 0.0001

LYS 222 ILE 223 0.0017

ILE 223 VAL 226 0.0074

VAL 226 PRO 227 0.0001

PRO 227 ARG 228 -0.0004

ARG 228 ASP 232 0.0061

ASP 232 CYS 233 0.0001

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.

Should you encounter any unexpected behaviour, please let us know. elNémo has been relocated. **Some cleaning from time to time** Sorry for the inconvenience.

*** 2J5L Structure of a Plasmodium falciparum apical membrane antigen 1-Fab F8. 12.19 complex ***

CA strain for 2608162332391822803

--- normal mode 7 ---

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
Some cleaning from time to time
Sorry for the inconvenience.

* 2J5L Structure of a Plasmodium falciparum apical membrane antigen 1-Fab F8. 12.19 complex *