CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J5L Structure of a Plasmodium falciparum apical membrane antigen 1-Fab F8. 12.19 complex  ***

<R2> analysis for 2608162332391822803

---  normal mode 76  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0786
ILE 4790.0271
PHE 4800.0267
ILE 4810.0100
SER 4820.0059
ASP 4830.0107
ASP 4840.0111
LYS 4850.0037
ASP 4860.0066
SER 4870.0091
LEU 4880.0070
LYS 4890.0039
CYS 4900.0037
PRO 4910.0026
CYS 4920.0025
ASP 4930.0017
PRO 4940.0049
GLU 4950.0057
MET 4960.0047
VAL 4970.0069
SER 4980.0044
GLN 4990.0087
SER 5000.0058
THR 5010.0110
CYS 5020.0091
ARG 5030.0078
PHE 5040.0095
PHE 5050.0066
VAL 5060.0024
CYS 5070.0045
LYS 5080.0044
CYS 5090.0060
VAL 5100.0083
GLU 5110.0116
ARG 5120.0226
SER 20.0063
VAL 30.0085
LEU 40.0085
SER 50.0104
GLN 60.0098
SER 70.0116
PRO 80.0139
ALA 90.0131
ILE 100.0126
LEU 110.0148
SER 120.0153
ALA 130.0166
SER 140.0188
PRO 150.0084
GLY 160.0102
GLU 170.0164
LYS 180.0182
VAL 190.0166
THR 200.0030
MET 210.0038
THR 220.0061
CYS 230.0083
ARG 240.0093
ALA 250.0057
ARG 260.0078
SER 270.0037
SER 290.0041
VAL 300.0055
SER 310.0095
TYR 320.0081
MET 330.0071
HIS 340.0082
TRP 350.0058
TYR 360.0053
GLN 370.0048
GLN 380.0052
LYS 390.0036
SER 400.0020
GLY 410.0198
SER 420.0130
SER 430.0053
PRO 440.0066
LYS 450.0078
PRO 460.0084
TRP 470.0097
ILE 480.0102
HIS 490.0109
ALA 500.0128
THR 510.0115
SER 520.0132
ASN 530.0134
LEU 540.0145
ALA 550.0156
SER 560.0317
GLY 570.0239
VAL 580.0145
PRO 590.0145
ALA 600.0185
ARG 610.0134
PHE 620.0077
SER 630.0082
GLY 640.0105
SER 650.0129
GLY 660.0138
SER 670.0144
GLY 680.0072
THR 690.0067
SER 700.0117
TYR 710.0074
SER 720.0067
LEU 730.0058
THR 740.0074
ILE 750.0088
SER 760.0142
ARG 770.0169
VAL 780.0080
GLU 790.0086
ALA 800.0073
GLU 810.0104
ASP 820.0085
ALA 830.0090
ALA 840.0088
THR 850.0088
TYR 860.0048
TYR 870.0043
CYS 880.0042
GLN 890.0041
GLN 900.0040
TRP 910.0050
SER 920.0046
SER 930.0050
HIS 940.0059
PRO 950.0047
PRO 960.0033
THR 970.0015
PHE 980.0027
GLY 990.0074
SER 1000.0099
GLY 1010.0104
THR 1020.0117
LYS 1030.0111
LEU 1040.0118
GLU 1050.0107
ILE 1060.0112
LYS 1070.0186
ARG 1080.0194
ALA 1090.0228
ASP 1100.0136
ALA 1110.0131
ALA 1120.0158
PRO 1130.0203
THR 1140.0193
VAL 1150.0185
SER 1160.0054
ILE 1170.0020
PHE 1180.0033
PRO 1190.0099
PRO 1200.0130
SER 1210.0120
SER 1220.0165
GLU 1230.0145
GLN 1240.0171
LEU 1250.0228
THR 1260.0224
SER 1270.0240
GLY 1280.0287
GLY 1290.0258
ALA 1300.0221
SER 1310.0145
VAL 1320.0120
VAL 1330.0133
CYS 1340.0097
PHE 1350.0087
LEU 1360.0137
ASN 1370.0174
ASN 1380.0154
PHE 1390.0164
TYR 1400.0080
PRO 1410.0093
LYS 1420.0163
ASP 1430.0180
ILE 1440.0144
ASN 1450.0138
VAL 1460.0123
LYS 1470.0141
TRP 1480.0159
LYS 1490.0191
ILE 1500.0211
ASP 1510.0276
GLY 1520.0361
SER 1530.0264
GLU 1540.0255
ARG 1550.0214
GLN 1560.0443
ASN 1570.0786
GLY 1580.0159
VAL 1590.0257
LEU 1600.0410
ASN 1610.0124
SER 1620.0080
TRP 1630.0158
THR 1640.0150
ASP 1650.0103
GLN 1660.0069
ASP 1670.0078
SER 1680.0101
LYS 1690.0200
ASP 1700.0176
SER 1710.0105
THR 1720.0127
TYR 1730.0121
SER 1740.0127
MET 1750.0143
SER 1760.0125
SER 1770.0151
THR 1780.0210
LEU 1790.0170
THR 1800.0161
LEU 1810.0119
THR 1820.0236
LYS 1830.0292
ASP 1840.0265
GLU 1850.0150
TYR 1860.0187
GLU 1870.0211
ARG 1880.0194
HIS 1890.0107
ASN 1900.0125
SER 1910.0153
TYR 1920.0169
THR 1930.0180
CYS 1940.0117
GLU 1950.0076
ALA 1960.0126
THR 1970.0281
HIS 1980.0203
LYS 1990.0170
THR 2000.0208
SER 2010.0196
THR 2020.0640
SER 2030.0613
PRO 2040.0422
ILE 2050.0366
VAL 2060.0105
LYS 2070.0087
SER 2080.0055
PHE 2090.0113
ASN 2100.0102
ARG 2110.0119
ASN 2120.0115
GLU 2130.0130
CYS 2140.0190
GLU 10.0280
VAL 20.0100
GLN 30.0184
LEU 40.0064
VAL 50.0043
GLU 60.0058
SER 70.0049
GLY 80.0058
GLY 90.0068
GLY 100.0108
LEU 110.0096
VAL 120.0063
LYS 130.0102
PRO 140.0098
GLY 150.0155
GLY 160.0108
SER 170.0063
LEU 180.0025
LYS 190.0055
LEU 200.0046
SER 210.0054
CYS 220.0058
ALA 230.0080
ALA 240.0121
SER 250.0135
GLY 260.0159
PHE 270.0161
ILE 280.0203
PHE 290.0157
SER 300.0180
ASP 310.0139
TYR 320.0114
TYR 330.0095
MET 340.0038
TYR 350.0018
TRP 360.0029
VAL 370.0044
ARG 380.0032
GLN 390.0023
THR 400.0052
PRO 410.0027
GLU 420.0086
LYS 430.0063
ARG 440.0071
LEU 450.0024
GLU 460.0016
TRP 470.0016
VAL 480.0021
ALA 490.0018
THR 500.0029
ILE 510.0062
SER 520.0127
ASP 520.0180
GLY 530.0238
ASN 540.0246
SER 550.0179
TYR 560.0147
THR 570.0100
TYR 580.0021
TYR 590.0019
VAL 600.0019
ASP 610.0215
SER 620.0186
VAL 630.0086
LYS 640.0113
GLY 650.0076
ARG 660.0047
PHE 670.0017
THR 680.0029
ILE 690.0027
SER 700.0096
ARG 710.0068
ASP 720.0107
ASN 730.0096
ALA 740.0104
LYS 750.0208
ASN 760.0100
ASN 770.0080
LEU 780.0055
TYR 790.0062
LEU 800.0034
GLN 810.0033
MET 820.0036
SER 820.0066
SER 820.0105
LEU 820.0077
LYS 830.0104
SER 840.0083
GLU 850.0101
ASP 860.0081
THR 870.0072
ALA 880.0060
ILE 890.0053
TYR 900.0057
TYR 910.0047
CYS 920.0042
ALA 930.0040
ARG 940.0039
ASP 950.0025
GLY 960.0042
PRO 970.0143
THR 980.0170
ASP 990.0236
SER 1000.0100
SER 1000.0087
GLY 1000.0091
TYR 1000.0091
GLY 1000.0074
GLY 1000.0061
PHE 1000.0042
GLY 1010.0054
TYR 1020.0047
TRP 1030.0042
GLY 1040.0042
GLN 1050.0048
GLY 1060.0064
THR 1070.0051
LEU 1080.0062
VAL 1090.0083
THR 1100.0078
VAL 1110.0052
SER 1120.0067
GLU 1130.0083
ALA 1140.0088
LYS 1150.0068
THR 1160.0121
THR 1170.0092
PRO 1180.0117
PRO 1190.0091
SER 1200.0074
VAL 1210.0079
TYR 1220.0073
PRO 1230.0079
LEU 1240.0055
ALA 1250.0105
PRO 1260.0136
GLY 1270.0228
SER 1280.0177
ALA 1290.0549
ALA 1300.0342
GLN 1330.0535
THR 1340.0375
ASN 1350.0243
SER 1360.0212
MET 1370.0177
VAL 1380.0152
THR 1390.0102
LEU 1400.0115
GLY 1410.0132
CYS 1420.0101
LEU 1430.0086
VAL 1440.0088
LYS 1450.0052
GLY 1460.0054
TYR 1470.0063
PHE 1480.0097
PRO 1490.0106
GLU 1500.0110
PRO 1510.0100
VAL 1520.0101
THR 1530.0148
VAL 1540.0199
THR 1560.0242
TRP 1570.0181
ASN 1620.0135
SER 1630.0253
GLY 1640.0379
SER 1650.0283
LEU 1660.0164
SER 1670.0244
SER 1680.0207
GLY 1690.0208
VAL 1710.0180
HIS 1720.0131
THR 1730.0176
PHE 1740.0121
PRO 1750.0117
ALA 1760.0073
VAL 1770.0140
LEU 1780.0184
GLN 1790.0369
SER 1800.0408
ASP 1830.0049
LEU 1840.0038
TYR 1850.0034
THR 1860.0119
LEU 1870.0123
SER 1880.0170
SER 1890.0175
SER 1900.0152
VAL 1910.0158
THR 1920.0098
VAL 1930.0052
PRO 1940.0141
SER 1950.0150
SER 1960.0175
PRO 1980.0216
ARG 1990.0175
PRO 2000.0187
SER 2020.0230
GLU 2030.0259
THR 2040.0191
VAL 2050.0082
THR 2060.0093
CYS 2080.0135
ASN 2090.0095
VAL 2100.0110
ALA 2110.0045
HIS 2120.0036
PRO 2130.0034
ALA 2140.0090
SER 2150.0157
SER 2160.0144
THR 2170.0187
LYS 2180.0201
VAL 2190.0196
ASP 2200.0083
LYS 2210.0102
LYS 2220.0094
ILE 2230.0124
VAL 2260.0153
PRO 2270.0222
ARG 2280.0197
ASP 2320.0258
CYS 2330.0236

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.