CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J5L Structure of a Plasmodium falciparum apical membrane antigen 1-Fab F8. 12.19 complex  ***

<R2> analysis for 2608162332391822803

---  normal mode 9  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0451
ILE 4790.0200
PHE 4800.0172
ILE 4810.0184
SER 4820.0209
ASP 4830.0231
ASP 4840.0235
LYS 4850.0191
ASP 4860.0207
SER 4870.0218
LEU 4880.0185
LYS 4890.0175
CYS 4900.0140
PRO 4910.0122
CYS 4920.0112
ASP 4930.0121
PRO 4940.0127
GLU 4950.0117
MET 4960.0149
VAL 4970.0156
SER 4980.0206
GLN 4990.0227
SER 5000.0295
THR 5010.0321
CYS 5020.0273
ARG 5030.0232
PHE 5040.0207
PHE 5050.0170
VAL 5060.0142
CYS 5070.0126
LYS 5080.0096
CYS 5090.0097
VAL 5100.0109
GLU 5110.0118
ARG 5120.0128
SER 20.0098
VAL 30.0086
LEU 40.0075
SER 50.0076
GLN 60.0075
SER 70.0079
PRO 80.0083
ALA 90.0093
ILE 100.0100
LEU 110.0098
SER 120.0100
ALA 130.0105
SER 140.0121
PRO 150.0145
GLY 160.0155
GLU 170.0134
LYS 180.0132
VAL 190.0110
THR 200.0109
MET 210.0091
THR 220.0085
CYS 230.0080
ARG 240.0086
ALA 250.0091
ARG 260.0104
SER 270.0119
SER 290.0120
VAL 300.0105
SER 310.0106
TYR 320.0087
MET 330.0077
HIS 340.0073
TRP 350.0078
TYR 360.0082
GLN 370.0093
GLN 380.0105
LYS 390.0107
SER 400.0119
GLY 410.0131
SER 420.0115
SER 430.0117
PRO 440.0104
LYS 450.0096
PRO 460.0090
TRP 470.0086
ILE 480.0081
HIS 490.0075
ALA 500.0082
THR 510.0090
SER 520.0100
ASN 530.0095
LEU 540.0100
ALA 550.0091
SER 560.0098
GLY 570.0123
VAL 580.0124
PRO 590.0153
ALA 600.0164
ARG 610.0160
PHE 620.0131
SER 630.0125
GLY 640.0110
SER 650.0111
GLY 660.0114
SER 670.0122
GLY 680.0124
THR 690.0111
SER 700.0107
TYR 710.0095
SER 720.0095
LEU 730.0100
THR 740.0119
ILE 750.0132
SER 760.0155
ARG 770.0157
VAL 780.0136
GLU 790.0153
ALA 800.0144
GLU 810.0147
ASP 820.0125
ALA 830.0121
ALA 840.0108
THR 850.0102
TYR 860.0088
TYR 870.0080
CYS 880.0075
GLN 890.0074
GLN 900.0074
TRP 910.0081
SER 920.0085
SER 930.0093
HIS 940.0097
PRO 950.0092
PRO 960.0083
THR 970.0077
PHE 980.0083
GLY 990.0077
SER 1000.0084
GLY 1010.0092
THR 1020.0089
LYS 1030.0099
LEU 1040.0107
GLU 1050.0114
ILE 1060.0121
LYS 1070.0124
ARG 1080.0129
ALA 1090.0132
ASP 1100.0149
ALA 1110.0138
ALA 1120.0137
PRO 1130.0114
THR 1140.0096
VAL 1150.0084
SER 1160.0070
ILE 1170.0096
PHE 1180.0120
PRO 1190.0174
PRO 1200.0199
SER 1210.0182
SER 1220.0219
GLU 1230.0224
GLN 1240.0234
LEU 1250.0290
THR 1260.0313
SER 1270.0341
GLY 1280.0384
GLY 1290.0330
ALA 1300.0281
SER 1310.0218
VAL 1320.0176
VAL 1330.0140
CYS 1340.0114
PHE 1350.0107
LEU 1360.0112
ASN 1370.0129
ASN 1380.0134
PHE 1390.0136
TYR 1400.0145
PRO 1410.0146
LYS 1420.0145
ASP 1430.0162
ILE 1440.0137
ASN 1450.0135
VAL 1460.0138
LYS 1470.0146
TRP 1480.0171
LYS 1490.0197
ILE 1500.0258
ASP 1510.0293
GLY 1520.0274
SER 1530.0216
GLU 1540.0256
ARG 1550.0232
GLN 1560.0269
ASN 1570.0299
GLY 1580.0272
VAL 1590.0231
LEU 1600.0226
ASN 1610.0181
SER 1620.0183
TRP 1630.0183
THR 1640.0166
ASP 1650.0151
GLN 1660.0150
ASP 1670.0153
SER 1680.0156
LYS 1690.0170
ASP 1700.0152
SER 1710.0142
THR 1720.0143
TYR 1730.0145
SER 1740.0143
MET 1750.0146
SER 1760.0152
SER 1770.0159
THR 1780.0179
LEU 1790.0221
THR 1800.0282
LEU 1810.0333
THR 1820.0405
LYS 1830.0391
ASP 1840.0451
GLU 1850.0414
TYR 1860.0353
GLU 1870.0395
ARG 1880.0442
HIS 1890.0381
ASN 1900.0350
SER 1910.0271
TYR 1920.0212
THR 1930.0152
CYS 1940.0113
GLU 1950.0097
ALA 1960.0099
THR 1970.0113
HIS 1980.0127
LYS 1990.0151
THR 2000.0151
SER 2010.0146
THR 2020.0161
SER 2030.0116
PRO 2040.0095
ILE 2050.0097
VAL 2060.0091
LYS 2070.0109
SER 2080.0150
PHE 2090.0206
ASN 2100.0276
ARG 2110.0312
ASN 2120.0369
GLU 2130.0326
CYS 2140.0297
GLU 10.0208
VAL 20.0184
GLN 30.0191
LEU 40.0171
VAL 50.0185
GLU 60.0170
SER 70.0165
GLY 80.0151
GLY 90.0124
GLY 100.0069
LEU 110.0061
VAL 120.0075
LYS 130.0092
PRO 140.0103
GLY 150.0107
GLY 160.0103
SER 170.0107
LEU 180.0114
LYS 190.0152
LEU 200.0151
SER 210.0169
CYS 220.0179
ALA 230.0203
ALA 240.0195
SER 250.0215
GLY 260.0207
PHE 270.0190
ILE 280.0196
PHE 290.0192
SER 300.0193
ASP 310.0171
TYR 320.0153
TYR 330.0146
MET 340.0136
TYR 350.0122
TRP 360.0123
VAL 370.0106
ARG 380.0112
GLN 390.0112
THR 400.0112
PRO 410.0117
GLU 420.0110
LYS 430.0109
ARG 440.0100
LEU 450.0097
GLU 460.0089
TRP 470.0092
VAL 480.0109
ALA 490.0118
THR 500.0126
ILE 510.0150
SER 520.0160
ASP 520.0184
GLY 530.0217
ASN 540.0226
SER 550.0196
TYR 560.0174
THR 570.0154
TYR 580.0125
TYR 590.0113
VAL 600.0093
ASP 610.0081
SER 620.0082
VAL 630.0099
LYS 640.0096
GLY 650.0108
ARG 660.0112
PHE 670.0123
THR 680.0140
ILE 690.0147
SER 700.0174
ARG 710.0194
ASP 720.0224
ASN 730.0228
ALA 740.0259
LYS 750.0255
ASN 760.0221
ASN 770.0207
LEU 780.0180
TYR 790.0171
LEU 800.0146
GLN 810.0139
MET 820.0116
SER 820.0114
SER 820.0105
LEU 820.0106
LYS 830.0097
SER 840.0103
GLU 850.0103
ASP 860.0106
THR 870.0114
ALA 880.0119
ILE 890.0126
TYR 900.0122
TYR 910.0133
CYS 920.0134
ALA 930.0120
ARG 940.0124
ASP 950.0105
GLY 960.0103
PRO 970.0113
THR 980.0100
ASP 990.0079
SER 1000.0078
SER 1000.0082
GLY 1000.0088
TYR 1000.0079
GLY 1000.0082
GLY 1000.0080
PHE 1000.0096
GLY 1010.0102
TYR 1020.0125
TRP 1030.0126
GLY 1040.0146
GLN 1050.0158
GLY 1060.0132
THR 1070.0121
LEU 1080.0110
VAL 1090.0092
THR 1100.0086
VAL 1110.0086
SER 1120.0074
GLU 1130.0090
ALA 1140.0078
LYS 1150.0076
THR 1160.0082
THR 1170.0131
PRO 1180.0180
PRO 1190.0177
SER 1200.0174
VAL 1210.0179
TYR 1220.0153
PRO 1230.0114
LEU 1240.0111
ALA 1250.0097
PRO 1260.0112
GLY 1270.0185
SER 1280.0228
ALA 1290.0222
ALA 1300.0171
GLN 1330.0210
THR 1340.0235
ASN 1350.0217
SER 1360.0235
MET 1370.0172
VAL 1380.0112
THR 1390.0071
LEU 1400.0069
GLY 1410.0102
CYS 1420.0135
LEU 1430.0153
VAL 1440.0172
LYS 1450.0162
GLY 1460.0167
TYR 1470.0171
PHE 1480.0110
PRO 1490.0095
GLU 1500.0106
PRO 1510.0135
VAL 1520.0152
THR 1530.0164
VAL 1540.0166
THR 1560.0154
TRP 1570.0123
ASN 1620.0109
SER 1630.0145
GLY 1640.0166
SER 1650.0148
LEU 1660.0139
SER 1670.0174
SER 1680.0179
GLY 1690.0151
VAL 1710.0137
HIS 1720.0152
THR 1730.0170
PHE 1740.0170
PRO 1750.0185
ALA 1760.0192
VAL 1770.0200
LEU 1780.0193
GLN 1790.0196
SER 1800.0163
ASP 1830.0126
LEU 1840.0143
TYR 1850.0159
THR 1860.0184
LEU 1870.0175
SER 1880.0162
SER 1890.0145
SER 1900.0109
VAL 1910.0098
THR 1920.0110
VAL 1930.0127
PRO 1940.0172
SER 1950.0176
SER 1960.0202
PRO 1980.0152
ARG 1990.0131
PRO 2000.0132
SER 2020.0157
GLU 2030.0113
THR 2040.0073
VAL 2050.0069
THR 2060.0094
CYS 2080.0125
ASN 2090.0151
VAL 2100.0174
ALA 2110.0181
HIS 2120.0172
PRO 2130.0180
ALA 2140.0149
SER 2150.0173
SER 2160.0199
THR 2170.0200
LYS 2180.0193
VAL 2190.0183
ASP 2200.0149
LYS 2210.0133
LYS 2220.0102
ILE 2230.0093
VAL 2260.0118
PRO 2270.0149
ARG 2280.0189
ASP 2320.0257
CYS 2330.0328

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.