CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J5L Structure of a Plasmodium falciparum apical membrane antigen 1-Fab F8. 12.19 complex  ***

<R2> analysis for 2608162332391822803

---  normal mode 97  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0602
ILE 4790.0237
PHE 4800.0168
ILE 4810.0164
SER 4820.0052
ASP 4830.0063
ASP 4840.0105
LYS 4850.0061
ASP 4860.0079
SER 4870.0066
LEU 4880.0023
LYS 4890.0039
CYS 4900.0065
PRO 4910.0088
CYS 4920.0077
ASP 4930.0060
PRO 4940.0031
GLU 4950.0023
MET 4960.0087
VAL 4970.0158
SER 4980.0107
GLN 4990.0085
SER 5000.0263
THR 5010.0063
CYS 5020.0163
ARG 5030.0069
PHE 5040.0045
PHE 5050.0045
VAL 5060.0049
CYS 5070.0057
LYS 5080.0094
CYS 5090.0147
VAL 5100.0153
GLU 5110.0136
ARG 5120.0198
SER 20.0147
VAL 30.0200
LEU 40.0233
SER 50.0291
GLN 60.0215
SER 70.0229
PRO 80.0473
ALA 90.0430
ILE 100.0511
LEU 110.0152
SER 120.0073
ALA 130.0179
SER 140.0326
PRO 150.0223
GLY 160.0242
GLU 170.0367
LYS 180.0270
VAL 190.0270
THR 200.0191
MET 210.0194
THR 220.0242
CYS 230.0242
ARG 240.0262
ALA 250.0227
ARG 260.0135
SER 270.0348
SER 290.0168
VAL 300.0141
SER 310.0145
TYR 320.0049
MET 330.0052
HIS 340.0074
TRP 350.0079
TYR 360.0050
GLN 370.0029
GLN 380.0077
LYS 390.0115
SER 400.0189
GLY 410.0159
SER 420.0145
SER 430.0135
PRO 440.0100
LYS 450.0055
PRO 460.0068
TRP 470.0097
ILE 480.0099
HIS 490.0097
ALA 500.0105
THR 510.0104
SER 520.0170
ASN 530.0205
LEU 540.0208
ALA 550.0226
SER 560.0602
GLY 570.0315
VAL 580.0290
PRO 590.0231
ALA 600.0197
ARG 610.0105
PHE 620.0124
SER 630.0120
GLY 640.0134
SER 650.0095
GLY 660.0067
SER 670.0209
GLY 680.0249
THR 690.0128
SER 700.0162
TYR 710.0060
SER 720.0105
LEU 730.0148
THR 740.0105
ILE 750.0067
SER 760.0149
ARG 770.0210
VAL 780.0156
GLU 790.0116
ALA 800.0123
GLU 810.0123
ASP 820.0078
ALA 830.0044
ALA 840.0068
THR 850.0088
TYR 860.0062
TYR 870.0099
CYS 880.0146
GLN 890.0062
GLN 900.0066
TRP 910.0074
SER 920.0093
SER 930.0084
HIS 940.0100
PRO 950.0116
PRO 960.0101
THR 970.0097
PHE 980.0127
GLY 990.0115
SER 1000.0128
GLY 1010.0065
THR 1020.0072
LYS 1030.0185
LEU 1040.0084
GLU 1050.0090
ILE 1060.0083
LYS 1070.0222
ARG 1080.0193
ALA 1090.0195
ASP 1100.0127
ALA 1110.0127
ALA 1120.0110
PRO 1130.0049
THR 1140.0090
VAL 1150.0086
SER 1160.0148
ILE 1170.0134
PHE 1180.0118
PRO 1190.0175
PRO 1200.0174
SER 1210.0155
SER 1220.0276
GLU 1230.0215
GLN 1240.0151
LEU 1250.0246
THR 1260.0272
SER 1270.0178
GLY 1280.0181
GLY 1290.0175
ALA 1300.0152
SER 1310.0110
VAL 1320.0123
VAL 1330.0132
CYS 1340.0117
PHE 1350.0124
LEU 1360.0128
ASN 1370.0077
ASN 1380.0051
PHE 1390.0027
TYR 1400.0077
PRO 1410.0063
LYS 1420.0021
ASP 1430.0084
ILE 1440.0079
ASN 1450.0175
VAL 1460.0144
LYS 1470.0178
TRP 1480.0203
LYS 1490.0180
ILE 1500.0135
ASP 1510.0223
GLY 1520.0320
SER 1530.0268
GLU 1540.0104
ARG 1550.0255
GLN 1560.0250
ASN 1570.0278
GLY 1580.0129
VAL 1590.0093
LEU 1600.0047
ASN 1610.0070
SER 1620.0108
TRP 1630.0118
THR 1640.0123
ASP 1650.0123
GLN 1660.0078
ASP 1670.0069
SER 1680.0070
LYS 1690.0065
ASP 1700.0074
SER 1710.0090
THR 1720.0075
TYR 1730.0066
SER 1740.0086
MET 1750.0102
SER 1760.0121
SER 1770.0103
THR 1780.0102
LEU 1790.0090
THR 1800.0037
LEU 1810.0069
THR 1820.0065
LYS 1830.0073
ASP 1840.0068
GLU 1850.0137
TYR 1860.0074
GLU 1870.0051
ARG 1880.0240
HIS 1890.0202
ASN 1900.0138
SER 1910.0105
TYR 1920.0049
THR 1930.0071
CYS 1940.0156
GLU 1950.0115
ALA 1960.0058
THR 1970.0090
HIS 1980.0094
LYS 1990.0161
THR 2000.0079
SER 2010.0022
THR 2020.0407
SER 2030.0432
PRO 2040.0207
ILE 2050.0203
VAL 2060.0126
LYS 2070.0114
SER 2080.0111
PHE 2090.0124
ASN 2100.0136
ARG 2110.0117
ASN 2120.0261
GLU 2130.0267
CYS 2140.0405
GLU 10.0368
VAL 20.0281
GLN 30.0200
LEU 40.0144
VAL 50.0153
GLU 60.0151
SER 70.0144
GLY 80.0119
GLY 90.0052
GLY 100.0168
LEU 110.0177
VAL 120.0177
LYS 130.0240
PRO 140.0173
GLY 150.0153
GLY 160.0133
SER 170.0114
LEU 180.0103
LYS 190.0133
LEU 200.0131
SER 210.0144
CYS 220.0198
ALA 230.0187
ALA 240.0195
SER 250.0270
GLY 260.0225
PHE 270.0235
ILE 280.0076
PHE 290.0077
SER 300.0071
ASP 310.0016
TYR 320.0038
TYR 330.0059
MET 340.0025
TYR 350.0026
TRP 360.0027
VAL 370.0110
ARG 380.0093
GLN 390.0111
THR 400.0129
PRO 410.0275
GLU 420.0243
LYS 430.0180
ARG 440.0135
LEU 450.0158
GLU 460.0075
TRP 470.0091
VAL 480.0077
ALA 490.0058
THR 500.0056
ILE 510.0048
SER 520.0074
ASP 520.0088
GLY 530.0134
ASN 540.0160
SER 550.0130
TYR 560.0104
THR 570.0095
TYR 580.0087
TYR 590.0104
VAL 600.0135
ASP 610.0184
SER 620.0135
VAL 630.0136
LYS 640.0137
GLY 650.0107
ARG 660.0097
PHE 670.0067
THR 680.0051
ILE 690.0055
SER 700.0148
ARG 710.0055
ASP 720.0080
ASN 730.0102
ALA 740.0369
LYS 750.0289
ASN 760.0123
ASN 770.0099
LEU 780.0120
TYR 790.0121
LEU 800.0097
GLN 810.0095
MET 820.0096
SER 820.0117
SER 820.0108
LEU 820.0067
LYS 830.0055
SER 840.0076
GLU 850.0024
ASP 860.0009
THR 870.0035
ALA 880.0044
ILE 890.0050
TYR 900.0049
TYR 910.0070
CYS 920.0083
ALA 930.0069
ARG 940.0050
ASP 950.0048
GLY 960.0063
PRO 970.0125
THR 980.0386
ASP 990.0442
SER 1000.0039
SER 1000.0042
GLY 1000.0047
TYR 1000.0046
GLY 1000.0045
GLY 1000.0040
PHE 1000.0036
GLY 1010.0036
TYR 1020.0035
TRP 1030.0074
GLY 1040.0085
GLN 1050.0088
GLY 1060.0040
THR 1070.0027
LEU 1080.0035
VAL 1090.0088
THR 1100.0122
VAL 1110.0127
SER 1120.0184
GLU 1130.0191
ALA 1140.0206
LYS 1150.0182
THR 1160.0087
THR 1170.0040
PRO 1180.0063
PRO 1190.0068
SER 1200.0088
VAL 1210.0136
TYR 1220.0068
PRO 1230.0092
LEU 1240.0102
ALA 1250.0116
PRO 1260.0134
GLY 1270.0223
SER 1280.0203
ALA 1290.0267
ALA 1300.0142
GLN 1330.0100
THR 1340.0137
ASN 1350.0156
SER 1360.0127
MET 1370.0104
VAL 1380.0078
THR 1390.0072
LEU 1400.0057
GLY 1410.0038
CYS 1420.0093
LEU 1430.0076
VAL 1440.0091
LYS 1450.0077
GLY 1460.0087
TYR 1470.0072
PHE 1480.0081
PRO 1490.0106
GLU 1500.0114
PRO 1510.0048
VAL 1520.0039
THR 1530.0100
VAL 1540.0115
THR 1560.0143
TRP 1570.0123
ASN 1620.0101
SER 1630.0167
GLY 1640.0266
SER 1650.0180
LEU 1660.0154
SER 1670.0209
SER 1680.0184
GLY 1690.0166
VAL 1710.0127
HIS 1720.0118
THR 1730.0122
PHE 1740.0139
PRO 1750.0147
ALA 1760.0145
VAL 1770.0133
LEU 1780.0147
GLN 1790.0162
SER 1800.0227
ASP 1830.0266
LEU 1840.0194
TYR 1850.0094
THR 1860.0083
LEU 1870.0092
SER 1880.0091
SER 1890.0079
SER 1900.0080
VAL 1910.0084
THR 1920.0061
VAL 1930.0024
PRO 1940.0051
SER 1950.0101
SER 1960.0138
PRO 1980.0054
ARG 1990.0048
PRO 2000.0086
SER 2020.0146
GLU 2030.0093
THR 2040.0131
VAL 2050.0112
THR 2060.0121
CYS 2080.0125
ASN 2090.0080
VAL 2100.0124
ALA 2110.0153
HIS 2120.0088
PRO 2130.0125
ALA 2140.0182
SER 2150.0198
SER 2160.0218
THR 2170.0132
LYS 2180.0330
VAL 2190.0324
ASP 2200.0094
LYS 2210.0138
LYS 2220.0145
ILE 2230.0105
VAL 2260.0095
PRO 2270.0078
ARG 2280.0098
ASP 2320.0137
CYS 2330.0064

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.