CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J5L Structure of a Plasmodium falciparum apical membrane antigen 1-Fab F8. 12.19 complex  ***

Normal Mode Analysis for ID 2608162332391822803

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.6872
mode 8 1.70 0.6934
mode 9 2.40 0.6797
mode 10 2.62 0.7004
mode 11 2.81 0.6324
mode 12 2.90 0.2795
mode 13 3.32 0.1634
mode 14 3.83 0.4963
mode 15 4.23 0.3182
mode 16 4.36 0.4226
mode 17 4.51 0.4599
mode 18 4.87 0.4728
mode 19 5.02 0.3678
mode 20 5.43 0.4034
mode 21 5.53 0.3953
mode 22 5.69 0.4781
mode 23 5.94 0.4836
mode 24 6.05 0.5491
mode 25 6.32 0.5031
mode 26 6.48 0.3841
mode 27 6.51 0.4812
mode 28 6.75 0.4755
mode 29 6.88 0.5067
mode 30 7.04 0.2504
mode 31 7.17 0.2667
mode 32 7.23 0.4524
mode 33 7.29 0.1925
mode 34 7.39 0.3114
mode 35 7.65 0.5074
mode 36 7.77 0.5023
mode 37 7.86 0.2018
mode 38 7.96 0.2649
mode 39 8.04 0.4991
mode 40 8.10 0.4175
mode 41 8.15 0.3935
mode 42 8.23 0.2574
mode 43 8.34 0.3188
mode 44 8.39 0.4090
mode 45 8.54 0.3749
mode 46 8.60 0.3987
mode 47 8.75 0.1601
mode 48 8.82 0.4147
mode 49 8.98 0.4006
mode 50 9.01 0.4029
mode 51 9.09 0.4040
mode 52 9.18 0.3146
mode 53 9.27 0.3059
mode 54 9.31 0.3138
mode 55 9.45 0.2755
mode 56 9.60 0.4108
mode 57 9.68 0.0828
mode 58 9.71 0.2172
mode 59 9.80 0.2934
mode 60 9.88 0.2574
mode 61 9.98 0.1765
mode 62 10.09 0.2805
mode 63 10.19 0.4098
mode 64 10.23 0.3245
mode 65 10.28 0.3680
mode 66 10.36 0.4316
mode 67 10.40 0.3108
mode 68 10.51 0.1896
mode 69 10.57 0.4208
mode 70 10.65 0.2752
mode 71 10.68 0.2353
mode 72 10.74 0.2835
mode 73 10.88 0.2634
mode 74 10.96 0.3128
mode 75 11.03 0.3183
mode 76 11.08 0.3677
mode 77 11.11 0.3968
mode 78 11.15 0.3022
mode 79 11.29 0.4541
mode 80 11.33 0.3701
mode 81 11.41 0.4211
mode 82 11.43 0.4048
mode 83 11.49 0.4096
mode 84 11.56 0.2790
mode 85 11.57 0.4771
mode 86 11.67 0.4554
mode 87 11.71 0.4082
mode 88 11.86 0.4789
mode 89 11.97 0.5349
mode 90 12.03 0.5367
mode 91 12.10 0.5210
mode 92 12.13 0.4029
mode 93 12.18 0.3377
mode 94 12.29 0.4794
mode 95 12.37 0.5222
mode 96 12.45 0.4124
mode 97 12.46 0.4531
mode 98 12.50 0.2353
mode 99 12.58 0.3854
mode 100 12.60 0.3896
mode 101 12.62 0.4279
mode 102 12.75 0.4109
mode 103 12.84 0.1871
mode 104 12.88 0.3876
mode 105 12.91 0.4660
mode 106 12.96 0.4127

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.