CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J4W Structure of a Plasmodium vivax apical membrane antigen 1-Fab F8.12.19 complex  ***

<R2> analysis for 2608162333311823063

---  normal mode 10  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0537
ILE 4210.0254
PHE 4220.0286
ILE 4230.0262
SER 4240.0239
ASN 4250.0251
ASP 4260.0196
LYS 4270.0127
GLU 4280.0107
SER 4290.0144
ILE 4300.0145
LYS 4310.0116
CYS 4320.0129
PRO 4330.0124
CYS 4340.0120
GLU 4350.0098
PRO 4360.0115
GLU 4370.0144
ARG 4380.0152
ILE 4390.0268
SER 4400.0331
GLU 4410.0443
SER 4420.0537
THR 4430.0477
CYS 4440.0410
ASN 4450.0287
PHE 4460.0259
TYR 4470.0185
VAL 4480.0181
CYS 4490.0174
ASN 4500.0201
CYS 4510.0172
VAL 4520.0196
GLU 4530.0187
LYS 4540.0243
GLU 10.0107
VAL 20.0104
GLN 30.0110
LEU 40.0116
VAL 50.0125
GLU 60.0126
SER 70.0129
GLY 80.0131
GLY 90.0135
GLY 100.0136
LEU 110.0127
VAL 120.0143
LYS 130.0138
PRO 140.0157
GLY 150.0171
GLY 160.0151
SER 170.0140
LEU 180.0134
LYS 190.0124
LEU 200.0121
SER 210.0112
CYS 220.0109
ALA 230.0100
ALA 240.0086
SER 250.0078
GLY 260.0075
PHE 270.0064
ILE 280.0045
PHE 290.0050
SER 300.0042
ASP 310.0048
TYR 320.0062
TYR 330.0072
MET 340.0086
TYR 350.0104
TRP 360.0119
VAL 370.0132
ARG 380.0141
GLN 390.0160
THR 400.0163
PRO 410.0196
GLU 420.0214
LYS 430.0201
ARG 440.0192
LEU 450.0176
GLU 460.0158
TRP 470.0144
VAL 480.0132
ALA 490.0113
THR 500.0096
ILE 510.0073
SER 520.0066
ASP 520.0055
GLY 530.0068
ASN 540.0064
SER 550.0054
TYR 560.0061
THR 570.0075
TYR 580.0094
TYR 590.0111
VAL 600.0135
ASP 610.0116
SER 620.0129
VAL 630.0119
LYS 640.0098
GLY 650.0098
ARG 660.0114
PHE 670.0107
THR 680.0094
ILE 690.0088
SER 700.0071
ARG 710.0064
ASP 720.0065
ASN 730.0052
ALA 740.0067
LYS 750.0076
ASN 760.0065
ASN 770.0079
LEU 780.0083
TYR 790.0096
LEU 800.0106
GLN 810.0111
MET 820.0125
SER 820.0133
SER 820.0140
LEU 820.0137
LYS 830.0142
SER 840.0146
GLU 850.0134
ASP 860.0124
THR 870.0130
ALA 880.0140
ILE 890.0144
TYR 900.0132
TYR 910.0133
CYS 920.0117
ALA 930.0119
ARG 940.0106
ASP 950.0111
GLY 960.0112
PRO 970.0085
THR 980.0077
ASP 990.0102
SER 1000.0123
SER 1000.0118
GLY 1000.0126
TYR 1000.0151
GLY 1000.0151
GLY 1000.0150
PHE 1000.0141
GLY 1010.0128
TYR 1020.0123
TRP 1030.0140
GLY 1040.0136
GLN 1050.0153
GLY 1060.0149
THR 1070.0141
LEU 1080.0139
VAL 1090.0138
THR 1100.0139
VAL 1110.0146
SER 1120.0140
GLU 1130.0128
ALA 1140.0113
LYS 1150.0101
THR 1160.0099
THR 1170.0083
PRO 1180.0089
PRO 1190.0107
SER 1200.0111
VAL 1210.0149
TYR 1220.0152
PRO 1230.0169
LEU 1240.0175
ALA 1250.0194
PRO 1260.0197
GLY 1270.0193
SER 1280.0207
ALA 1290.0222
ALA 1300.0215
GLN 1330.0250
THR 1340.0257
ASN 1350.0245
SER 1360.0290
MET 1370.0267
VAL 1380.0242
THR 1390.0200
LEU 1400.0198
GLY 1410.0180
CYS 1420.0174
LEU 1430.0153
VAL 1440.0147
LYS 1450.0120
GLY 1460.0101
TYR 1470.0103
PHE 1480.0103
PRO 1490.0110
GLU 1500.0123
PRO 1510.0156
VAL 1520.0141
THR 1530.0170
VAL 1540.0206
THR 1560.0240
TRP 1570.0251
ASN 1620.0287
SER 1630.0294
GLY 1640.0306
SER 1650.0333
LEU 1660.0297
SER 1670.0287
SER 1680.0247
GLY 1690.0213
VAL 1710.0195
HIS 1720.0161
THR 1730.0183
PHE 1740.0157
PRO 1750.0160
ALA 1760.0150
VAL 1770.0150
LEU 1780.0129
GLN 1790.0125
SER 1800.0120
ASP 1830.0107
LEU 1840.0109
TYR 1850.0124
THR 1860.0139
LEU 1870.0153
SER 1880.0160
SER 1890.0175
SER 1900.0177
VAL 1910.0206
THR 1920.0233
VAL 1930.0276
PRO 1940.0308
SER 1950.0310
SER 1960.0354
PRO 1980.0331
ARG 1990.0300
PRO 2000.0296
SER 2020.0344
GLU 2030.0343
THR 2040.0303
VAL 2050.0263
THR 2060.0240
CYS 2080.0211
ASN 2090.0206
VAL 2100.0177
ALA 2110.0150
HIS 2120.0131
PRO 2130.0142
ALA 2140.0127
SER 2150.0100
SER 2160.0104
THR 2170.0110
LYS 2180.0140
VAL 2190.0147
ASP 2200.0192
LYS 2210.0189
LYS 2220.0216
ILE 2230.0223
VAL 2260.0234
PRO 2270.0236
ARG 2280.0214
ASP 2320.0226
CYS 2330.0218
SER 20.0241
VAL 30.0248
LEU 40.0236
SER 50.0233
GLN 60.0209
SER 70.0201
PRO 80.0164
ALA 90.0183
ILE 100.0175
LEU 110.0144
SER 120.0148
ALA 130.0139
SER 140.0161
PRO 150.0158
GLY 160.0176
GLU 170.0174
LYS 180.0161
VAL 190.0156
THR 200.0162
MET 210.0178
THR 220.0183
CYS 230.0207
ARG 240.0226
ALA 250.0236
ARG 260.0269
SER 270.0261
SER 290.0240
VAL 300.0215
SER 310.0196
TYR 320.0179
MET 330.0184
HIS 340.0169
TRP 350.0167
TYR 360.0167
GLN 370.0171
GLN 380.0160
LYS 390.0160
SER 400.0173
GLY 410.0156
SER 420.0161
SER 430.0160
PRO 440.0164
LYS 450.0158
PRO 460.0154
TRP 470.0157
ILE 480.0156
HIS 490.0146
ALA 500.0157
THR 510.0165
SER 520.0149
ASN 530.0141
LEU 540.0142
ALA 550.0133
SER 560.0142
GLY 570.0151
VAL 580.0156
PRO 590.0156
ALA 600.0159
ARG 610.0157
PHE 620.0152
SER 630.0146
GLY 640.0152
SER 650.0156
GLY 660.0181
SER 670.0195
GLY 680.0216
THR 690.0230
SER 700.0216
TYR 710.0189
SER 720.0182
LEU 730.0170
THR 740.0153
ILE 750.0154
SER 760.0156
ARG 770.0167
VAL 780.0155
GLU 790.0151
ALA 800.0135
GLU 810.0139
ASP 820.0139
ALA 830.0129
ALA 840.0151
THR 850.0169
TYR 860.0179
TYR 870.0184
CYS 880.0181
GLN 890.0192
GLN 900.0190
TRP 910.0176
SER 920.0195
SER 930.0207
HIS 940.0185
PRO 950.0183
PRO 960.0180
THR 970.0201
PHE 980.0198
GLY 990.0213
SER 1000.0224
GLY 1010.0187
THR 1020.0169
LYS 1030.0167
LEU 1040.0131
GLU 1050.0134
ILE 1060.0133
LYS 1070.0136
ARG 1080.0120
ALA 1090.0107
ASP 1100.0084
ALA 1110.0058
ALA 1120.0046
PRO 1130.0079
THR 1140.0080
VAL 1150.0094
SER 1160.0135
ILE 1170.0136
PHE 1180.0150
PRO 1190.0147
PRO 1200.0143
SER 1210.0151
SER 1220.0147
GLU 1230.0148
GLN 1240.0137
LEU 1250.0138
THR 1260.0139
SER 1270.0133
GLY 1280.0132
GLY 1290.0133
ALA 1300.0135
SER 1310.0137
VAL 1320.0138
VAL 1330.0145
CYS 1340.0128
PHE 1350.0127
LEU 1360.0110
ASN 1370.0078
ASN 1380.0053
PHE 1390.0058
TYR 1400.0080
PRO 1410.0103
LYS 1420.0110
ASP 1430.0124
ILE 1440.0113
ASN 1450.0132
VAL 1460.0127
LYS 1470.0126
TRP 1480.0130
LYS 1490.0122
ILE 1500.0122
ASP 1510.0117
GLY 1520.0110
SER 1530.0111
GLU 1540.0111
ARG 1550.0119
GLN 1560.0124
ASN 1570.0130
GLY 1580.0132
VAL 1590.0140
LEU 1600.0149
ASN 1610.0157
SER 1620.0154
TRP 1630.0129
THR 1640.0082
ASP 1650.0077
GLN 1660.0080
ASP 1670.0087
SER 1680.0109
LYS 1690.0113
ASP 1700.0094
SER 1710.0097
THR 1720.0069
TYR 1730.0068
SER 1740.0074
MET 1750.0113
SER 1760.0143
SER 1770.0140
THR 1780.0144
LEU 1790.0139
THR 1800.0137
LEU 1810.0130
THR 1820.0131
LYS 1830.0135
ASP 1840.0129
GLU 1850.0124
TYR 1860.0131
GLU 1870.0132
ARG 1880.0123
HIS 1890.0122
ASN 1900.0128
SER 1910.0125
TYR 1920.0129
THR 1930.0129
CYS 1940.0125
GLU 1950.0114
ALA 1960.0112
THR 1970.0107
HIS 1980.0091
LYS 1990.0086
THR 2000.0066
SER 2010.0063
THR 2020.0071
SER 2030.0079
PRO 2040.0095
ILE 2050.0091
VAL 2060.0108
LYS 2070.0118
SER 2080.0122
PHE 2090.0144
ASN 2100.0140
ARG 2110.0142
ASN 2120.0164
GLU 2130.0182
CYS 2140.0204

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.