CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J4W Structure of a Plasmodium vivax apical membrane antigen 1-Fab F8.12.19 complex  ***

<R2> analysis for 2608162333311823063

---  normal mode 19  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0585
ILE 4210.0142
PHE 4220.0114
ILE 4230.0094
SER 4240.0113
ASN 4250.0101
ASP 4260.0122
LYS 4270.0101
GLU 4280.0120
SER 4290.0123
ILE 4300.0098
LYS 4310.0084
CYS 4320.0061
PRO 4330.0057
CYS 4340.0057
GLU 4350.0060
PRO 4360.0067
GLU 4370.0052
ARG 4380.0049
ILE 4390.0089
SER 4400.0127
GLU 4410.0208
SER 4420.0316
THR 4430.0224
CYS 4440.0131
ASN 4450.0059
PHE 4460.0063
TYR 4470.0059
VAL 4480.0042
CYS 4490.0040
ASN 4500.0027
CYS 4510.0046
VAL 4520.0045
GLU 4530.0042
LYS 4540.0039
GLU 10.0156
VAL 20.0106
GLN 30.0091
LEU 40.0055
VAL 50.0057
GLU 60.0046
SER 70.0070
GLY 80.0096
GLY 90.0100
GLY 100.0162
LEU 110.0131
VAL 120.0137
LYS 130.0135
PRO 140.0116
GLY 150.0215
GLY 160.0206
SER 170.0192
LEU 180.0166
LYS 190.0119
LEU 200.0085
SER 210.0074
CYS 220.0051
ALA 230.0070
ALA 240.0080
SER 250.0111
GLY 260.0129
PHE 270.0122
ILE 280.0127
PHE 290.0102
SER 300.0102
ASP 310.0101
TYR 320.0085
TYR 330.0073
MET 340.0048
TYR 350.0040
TRP 360.0032
VAL 370.0034
ARG 380.0032
GLN 390.0053
THR 400.0066
PRO 410.0102
GLU 420.0162
LYS 430.0132
ARG 440.0118
LEU 450.0081
GLU 460.0061
TRP 470.0054
VAL 480.0043
ALA 490.0049
THR 500.0050
ILE 510.0053
SER 520.0070
ASP 520.0093
GLY 530.0119
ASN 540.0119
SER 550.0080
TYR 560.0061
THR 570.0054
TYR 580.0060
TYR 590.0078
VAL 600.0101
ASP 610.0167
SER 620.0166
VAL 630.0144
LYS 640.0175
GLY 650.0197
ARG 660.0178
PHE 670.0124
THR 680.0102
ILE 690.0061
SER 700.0041
ARG 710.0049
ASP 720.0067
ASN 730.0094
ALA 740.0112
LYS 750.0117
ASN 760.0096
ASN 770.0073
LEU 780.0049
TYR 790.0064
LEU 800.0076
GLN 810.0112
MET 820.0153
SER 820.0193
SER 820.0205
LEU 820.0153
LYS 830.0133
SER 840.0089
GLU 850.0099
ASP 860.0090
THR 870.0050
ALA 880.0027
ILE 890.0012
TYR 900.0023
TYR 910.0025
CYS 920.0022
ALA 930.0038
ARG 940.0056
ASP 950.0048
GLY 960.0051
PRO 970.0059
THR 980.0045
ASP 990.0048
SER 1000.0045
SER 1000.0040
GLY 1000.0034
TYR 1000.0029
GLY 1000.0028
GLY 1000.0030
PHE 1000.0037
GLY 1010.0042
TYR 1020.0050
TRP 1030.0035
GLY 1040.0026
GLN 1050.0028
GLY 1060.0023
THR 1070.0040
LEU 1080.0060
VAL 1090.0083
THR 1100.0071
VAL 1110.0083
SER 1120.0069
GLU 1130.0155
ALA 1140.0257
LYS 1150.0399
THR 1160.0346
THR 1170.0375
PRO 1180.0347
PRO 1190.0227
SER 1200.0226
VAL 1210.0117
TYR 1220.0125
PRO 1230.0113
LEU 1240.0119
ALA 1250.0129
PRO 1260.0140
GLY 1270.0147
SER 1280.0218
ALA 1290.0149
ALA 1300.0236
GLN 1330.0369
THR 1340.0350
ASN 1350.0332
SER 1360.0332
MET 1370.0245
VAL 1380.0217
THR 1390.0118
LEU 1400.0104
GLY 1410.0095
CYS 1420.0079
LEU 1430.0100
VAL 1440.0097
LYS 1450.0130
GLY 1460.0200
TYR 1470.0176
PHE 1480.0173
PRO 1490.0113
GLU 1500.0101
PRO 1510.0181
VAL 1520.0171
THR 1530.0231
VAL 1540.0107
THR 1560.0120
TRP 1570.0082
ASN 1620.0129
SER 1630.0180
GLY 1640.0205
SER 1650.0221
LEU 1660.0166
SER 1670.0159
SER 1680.0163
GLY 1690.0132
VAL 1710.0069
HIS 1720.0077
THR 1730.0073
PHE 1740.0138
PRO 1750.0153
ALA 1760.0146
VAL 1770.0228
LEU 1780.0270
GLN 1790.0350
SER 1800.0442
ASP 1830.0322
LEU 1840.0258
TYR 1850.0168
THR 1860.0118
LEU 1870.0102
SER 1880.0094
SER 1890.0075
SER 1900.0086
VAL 1910.0083
THR 1920.0107
VAL 1930.0185
PRO 1940.0286
SER 1950.0372
SER 1960.0432
PRO 1980.0318
ARG 1990.0264
PRO 2000.0251
SER 2020.0327
GLU 2030.0281
THR 2040.0170
VAL 2050.0079
THR 2060.0049
CYS 2080.0059
ASN 2090.0143
VAL 2100.0179
ALA 2110.0309
HIS 2120.0304
PRO 2130.0454
ALA 2140.0408
SER 2150.0475
SER 2160.0585
THR 2170.0446
LYS 2180.0391
VAL 2190.0287
ASP 2200.0145
LYS 2210.0116
LYS 2220.0083
ILE 2230.0102
VAL 2260.0176
PRO 2270.0205
ARG 2280.0234
ASP 2320.0344
CYS 2330.0369
SER 20.0166
VAL 30.0185
LEU 40.0167
SER 50.0200
GLN 60.0158
SER 70.0172
PRO 80.0161
ALA 90.0167
ILE 100.0160
LEU 110.0107
SER 120.0109
ALA 130.0084
SER 140.0089
PRO 150.0074
GLY 160.0038
GLU 170.0029
LYS 180.0035
VAL 190.0055
THR 200.0092
MET 210.0106
THR 220.0138
CYS 230.0151
ARG 240.0207
ALA 250.0206
ARG 260.0262
SER 270.0259
SER 290.0217
VAL 300.0160
SER 310.0156
TYR 320.0081
MET 330.0062
HIS 340.0034
TRP 350.0027
TYR 360.0051
GLN 370.0078
GLN 380.0101
LYS 390.0143
SER 400.0175
GLY 410.0180
SER 420.0134
SER 430.0081
PRO 440.0083
LYS 450.0073
PRO 460.0049
TRP 470.0051
ILE 480.0031
HIS 490.0040
ALA 500.0074
THR 510.0089
SER 520.0106
ASN 530.0098
LEU 540.0094
ALA 550.0100
SER 560.0166
GLY 570.0180
VAL 580.0119
PRO 590.0129
ALA 600.0129
ARG 610.0080
PHE 620.0059
SER 630.0083
GLY 640.0091
SER 650.0148
GLY 660.0192
SER 670.0231
GLY 680.0252
THR 690.0243
SER 700.0224
TYR 710.0153
SER 720.0120
LEU 730.0070
THR 740.0060
ILE 750.0022
SER 760.0053
ARG 770.0018
VAL 780.0046
GLU 790.0088
ALA 800.0115
GLU 810.0128
ASP 820.0103
ALA 830.0124
ALA 840.0118
THR 850.0109
TYR 860.0077
TYR 870.0074
CYS 880.0062
GLN 890.0053
GLN 900.0054
TRP 910.0042
SER 920.0051
SER 930.0038
HIS 940.0029
PRO 950.0042
PRO 960.0045
THR 970.0067
PHE 980.0084
GLY 990.0109
SER 1000.0133
GLY 1010.0107
THR 1020.0110
LYS 1030.0125
LEU 1040.0103
GLU 1050.0117
ILE 1060.0117
LYS 1070.0118
ARG 1080.0140
ALA 1090.0157
ASP 1100.0158
ALA 1110.0134
ALA 1120.0131
PRO 1130.0139
THR 1140.0139
VAL 1150.0130
SER 1160.0115
ILE 1170.0077
PHE 1180.0070
PRO 1190.0069
PRO 1200.0088
SER 1210.0138
SER 1220.0171
GLU 1230.0194
GLN 1240.0165
LEU 1250.0118
THR 1260.0193
SER 1270.0249
GLY 1280.0212
GLY 1290.0184
ALA 1300.0086
SER 1310.0070
VAL 1320.0041
VAL 1330.0072
CYS 1340.0088
PHE 1350.0112
LEU 1360.0125
ASN 1370.0120
ASN 1380.0125
PHE 1390.0136
TYR 1400.0140
PRO 1410.0151
LYS 1420.0144
ASP 1430.0164
ILE 1440.0135
ASN 1450.0105
VAL 1460.0068
LYS 1470.0051
TRP 1480.0090
LYS 1490.0209
ILE 1500.0262
ASP 1510.0355
GLY 1520.0453
SER 1530.0384
GLU 1540.0380
ARG 1550.0255
GLN 1560.0243
ASN 1570.0240
GLY 1580.0146
VAL 1590.0096
LEU 1600.0143
ASN 1610.0110
SER 1620.0131
TRP 1630.0147
THR 1640.0115
ASP 1650.0127
GLN 1660.0133
ASP 1670.0141
SER 1680.0126
LYS 1690.0129
ASP 1700.0144
SER 1710.0139
THR 1720.0136
TYR 1730.0132
SER 1740.0126
MET 1750.0124
SER 1760.0124
SER 1770.0095
THR 1780.0084
LEU 1790.0068
THR 1800.0140
LEU 1810.0185
THR 1820.0290
LYS 1830.0199
ASP 1840.0313
GLU 1850.0322
TYR 1860.0227
GLU 1870.0258
ARG 1880.0370
HIS 1890.0337
ASN 1900.0320
SER 1910.0281
TYR 1920.0180
THR 1930.0154
CYS 1940.0080
GLU 1950.0105
ALA 1960.0120
THR 1970.0140
HIS 1980.0163
LYS 1990.0209
THR 2000.0209
SER 2010.0222
THR 2020.0280
SER 2030.0212
PRO 2040.0160
ILE 2050.0157
VAL 2060.0149
LYS 2070.0151
SER 2080.0166
PHE 2090.0214
ASN 2100.0252
ARG 2110.0201
ASN 2120.0171
GLU 2130.0152
CYS 2140.0200

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.