CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J4W Structure of a Plasmodium vivax apical membrane antigen 1-Fab F8.12.19 complex  ***

<R2> analysis for 2608162333311823063

---  normal mode 22  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0810
ILE 4210.0247
PHE 4220.0247
ILE 4230.0175
SER 4240.0155
ASN 4250.0150
ASP 4260.0139
LYS 4270.0098
GLU 4280.0097
SER 4290.0119
ILE 4300.0110
LYS 4310.0095
CYS 4320.0097
PRO 4330.0081
CYS 4340.0078
GLU 4350.0069
PRO 4360.0104
GLU 4370.0107
ARG 4380.0107
ILE 4390.0172
SER 4400.0195
GLU 4410.0265
SER 4420.0397
THR 4430.0292
CYS 4440.0153
ASN 4450.0113
PHE 4460.0119
TYR 4470.0114
VAL 4480.0098
CYS 4490.0102
ASN 4500.0111
CYS 4510.0088
VAL 4520.0099
GLU 4530.0108
LYS 4540.0120
GLU 10.0163
VAL 20.0105
GLN 30.0096
LEU 40.0051
VAL 50.0044
GLU 60.0033
SER 70.0025
GLY 80.0016
GLY 90.0041
GLY 100.0099
LEU 110.0095
VAL 120.0084
LYS 130.0105
PRO 140.0113
GLY 150.0115
GLY 160.0093
SER 170.0088
LEU 180.0067
LYS 190.0054
LEU 200.0050
SER 210.0053
CYS 220.0049
ALA 230.0059
ALA 240.0069
SER 250.0100
GLY 260.0117
PHE 270.0102
ILE 280.0091
PHE 290.0080
SER 300.0077
ASP 310.0070
TYR 320.0067
TYR 330.0066
MET 340.0051
TYR 350.0052
TRP 360.0054
VAL 370.0036
ARG 380.0023
GLN 390.0018
THR 400.0037
PRO 410.0042
GLU 420.0044
LYS 430.0042
ARG 440.0048
LEU 450.0046
GLU 460.0030
TRP 470.0040
VAL 480.0043
ALA 490.0063
THR 500.0059
ILE 510.0057
SER 520.0067
ASP 520.0068
GLY 530.0068
ASN 540.0065
SER 550.0060
TYR 560.0061
THR 570.0062
TYR 580.0057
TYR 590.0062
VAL 600.0066
ASP 610.0072
SER 620.0073
VAL 630.0068
LYS 640.0077
GLY 650.0085
ARG 660.0086
PHE 670.0063
THR 680.0064
ILE 690.0062
SER 700.0065
ARG 710.0066
ASP 720.0068
ASN 730.0078
ALA 740.0081
LYS 750.0080
ASN 760.0077
ASN 770.0066
LEU 780.0058
TYR 790.0061
LEU 800.0062
GLN 810.0064
MET 820.0075
SER 820.0086
SER 820.0099
LEU 820.0087
LYS 830.0101
SER 840.0100
GLU 850.0092
ASP 860.0067
THR 870.0060
ALA 880.0041
ILE 890.0025
TYR 900.0024
TYR 910.0029
CYS 920.0039
ALA 930.0047
ARG 940.0061
ASP 950.0061
GLY 960.0067
PRO 970.0070
THR 980.0080
ASP 990.0077
SER 1000.0063
SER 1000.0062
GLY 1000.0062
TYR 1000.0060
GLY 1000.0062
GLY 1000.0061
PHE 1000.0061
GLY 1010.0060
TYR 1020.0060
TRP 1030.0040
GLY 1040.0032
GLN 1050.0033
GLY 1060.0029
THR 1070.0017
LEU 1080.0054
VAL 1090.0070
THR 1100.0084
VAL 1110.0092
SER 1120.0115
GLU 1130.0115
ALA 1140.0110
LYS 1150.0197
THR 1160.0215
THR 1170.0217
PRO 1180.0229
PRO 1190.0152
SER 1200.0148
VAL 1210.0087
TYR 1220.0095
PRO 1230.0103
LEU 1240.0087
ALA 1250.0102
PRO 1260.0123
GLY 1270.0178
SER 1280.0364
ALA 1290.0507
ALA 1300.0364
GLN 1330.0585
THR 1340.0442
ASN 1350.0520
SER 1360.0278
MET 1370.0218
VAL 1380.0115
THR 1390.0085
LEU 1400.0096
GLY 1410.0092
CYS 1420.0079
LEU 1430.0087
VAL 1440.0090
LYS 1450.0095
GLY 1460.0119
TYR 1470.0134
PHE 1480.0143
PRO 1490.0155
GLU 1500.0168
PRO 1510.0227
VAL 1520.0179
THR 1530.0174
VAL 1540.0046
THR 1560.0072
TRP 1570.0118
ASN 1620.0225
SER 1630.0231
GLY 1640.0247
SER 1650.0278
LEU 1660.0199
SER 1670.0194
SER 1680.0146
GLY 1690.0104
VAL 1710.0062
HIS 1720.0047
THR 1730.0063
PHE 1740.0096
PRO 1750.0119
ALA 1760.0121
VAL 1770.0101
LEU 1780.0088
GLN 1790.0082
SER 1800.0132
ASP 1830.0121
LEU 1840.0116
TYR 1850.0101
THR 1860.0087
LEU 1870.0087
SER 1880.0080
SER 1890.0077
SER 1900.0071
VAL 1910.0083
THR 1920.0134
VAL 1930.0191
PRO 1940.0191
SER 1950.0161
SER 1960.0323
PRO 1980.0313
ARG 1990.0273
PRO 2000.0349
SER 2020.0527
GLU 2030.0483
THR 2040.0375
VAL 2050.0224
THR 2060.0169
CYS 2080.0090
ASN 2090.0038
VAL 2100.0078
ALA 2110.0206
HIS 2120.0242
PRO 2130.0364
ALA 2140.0360
SER 2150.0359
SER 2160.0420
THR 2170.0304
LYS 2180.0223
VAL 2190.0143
ASP 2200.0078
LYS 2210.0143
LYS 2220.0202
ILE 2230.0202
VAL 2260.0240
PRO 2270.0159
ARG 2280.0195
ASP 2320.0354
CYS 2330.0619
SER 20.0047
VAL 30.0048
LEU 40.0053
SER 50.0079
GLN 60.0095
SER 70.0126
PRO 80.0156
ALA 90.0158
ILE 100.0176
LEU 110.0157
SER 120.0157
ALA 130.0154
SER 140.0163
PRO 150.0181
GLY 160.0188
GLU 170.0171
LYS 180.0153
VAL 190.0133
THR 200.0133
MET 210.0119
THR 220.0106
CYS 230.0083
ARG 240.0080
ALA 250.0053
ARG 260.0042
SER 270.0064
SER 290.0084
VAL 300.0070
SER 310.0085
TYR 320.0053
MET 330.0040
HIS 340.0035
TRP 350.0049
TYR 360.0061
GLN 370.0081
GLN 380.0084
LYS 390.0108
SER 400.0114
GLY 410.0109
SER 420.0074
SER 430.0043
PRO 440.0052
LYS 450.0056
PRO 460.0047
TRP 470.0058
ILE 480.0041
HIS 490.0041
ALA 500.0056
THR 510.0060
SER 520.0070
ASN 530.0051
LEU 540.0044
ALA 550.0058
SER 560.0091
GLY 570.0130
VAL 580.0112
PRO 590.0134
ALA 600.0125
ARG 610.0141
PHE 620.0103
SER 630.0088
GLY 640.0083
SER 650.0107
GLY 660.0116
SER 670.0123
GLY 680.0117
THR 690.0094
SER 700.0109
TYR 710.0088
SER 720.0096
LEU 730.0093
THR 740.0120
ILE 750.0136
SER 760.0151
ARG 770.0174
VAL 780.0167
GLU 790.0189
ALA 800.0163
GLU 810.0165
ASP 820.0157
ALA 830.0150
ALA 840.0133
THR 850.0114
TYR 860.0085
TYR 870.0067
CYS 880.0051
GLN 890.0046
GLN 900.0043
TRP 910.0056
SER 920.0068
SER 930.0077
HIS 940.0083
PRO 950.0081
PRO 960.0058
THR 970.0053
PHE 980.0051
GLY 990.0064
SER 1000.0080
GLY 1010.0110
THR 1020.0124
LYS 1030.0145
LEU 1040.0151
GLU 1050.0152
ILE 1060.0146
LYS 1070.0137
ARG 1080.0114
ALA 1090.0131
ASP 1100.0238
ALA 1110.0190
ALA 1120.0217
PRO 1130.0064
THR 1140.0116
VAL 1150.0081
SER 1160.0099
ILE 1170.0095
PHE 1180.0096
PRO 1190.0047
PRO 1200.0028
SER 1210.0029
SER 1220.0104
GLU 1230.0077
GLN 1240.0074
LEU 1250.0153
THR 1260.0209
SER 1270.0205
GLY 1280.0238
GLY 1290.0178
ALA 1300.0118
SER 1310.0076
VAL 1320.0074
VAL 1330.0093
CYS 1340.0085
PHE 1350.0073
LEU 1360.0050
ASN 1370.0044
ASN 1380.0040
PHE 1390.0060
TYR 1400.0137
PRO 1410.0197
LYS 1420.0196
ASP 1430.0279
ILE 1440.0183
ASN 1450.0140
VAL 1460.0056
LYS 1470.0075
TRP 1480.0107
LYS 1490.0155
ILE 1500.0129
ASP 1510.0107
GLY 1520.0183
SER 1530.0208
GLU 1540.0238
ARG 1550.0207
GLN 1560.0226
ASN 1570.0279
GLY 1580.0174
VAL 1590.0119
LEU 1600.0081
ASN 1610.0075
SER 1620.0099
TRP 1630.0102
THR 1640.0111
ASP 1650.0130
GLN 1660.0115
ASP 1670.0112
SER 1680.0132
LYS 1690.0092
ASP 1700.0054
SER 1710.0081
THR 1720.0059
TYR 1730.0070
SER 1740.0052
MET 1750.0069
SER 1760.0082
SER 1770.0080
THR 1780.0073
LEU 1790.0140
THR 1800.0150
LEU 1810.0178
THR 1820.0297
LYS 1830.0275
ASP 1840.0355
GLU 1850.0304
TYR 1860.0217
GLU 1870.0256
ARG 1880.0274
HIS 1890.0160
ASN 1900.0071
SER 1910.0036
TYR 1920.0062
THR 1930.0110
CYS 1940.0093
GLU 1950.0062
ALA 1960.0058
THR 1970.0193
HIS 1980.0253
LYS 1990.0417
THR 2000.0449
SER 2010.0576
THR 2020.0810
SER 2030.0375
PRO 2040.0182
ILE 2050.0168
VAL 2060.0065
LYS 2070.0082
SER 2080.0091
PHE 2090.0121
ASN 2100.0102
ARG 2110.0135
ASN 2120.0330
GLU 2130.0397
CYS 2140.0493

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.