CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J4W Structure of a Plasmodium vivax apical membrane antigen 1-Fab F8.12.19 complex  ***

<R2> analysis for 2608162333311823063

---  normal mode 27  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0559
ILE 4210.0222
PHE 4220.0256
ILE 4230.0204
SER 4240.0159
ASN 4250.0167
ASP 4260.0130
LYS 4270.0057
GLU 4280.0051
SER 4290.0071
ILE 4300.0074
LYS 4310.0071
CYS 4320.0056
PRO 4330.0040
CYS 4340.0035
GLU 4350.0030
PRO 4360.0077
GLU 4370.0083
ARG 4380.0089
ILE 4390.0133
SER 4400.0138
GLU 4410.0164
SER 4420.0534
THR 4430.0446
CYS 4440.0127
ASN 4450.0128
PHE 4460.0126
TYR 4470.0135
VAL 4480.0104
CYS 4490.0077
ASN 4500.0072
CYS 4510.0045
VAL 4520.0044
GLU 4530.0040
LYS 4540.0093
GLU 10.0102
VAL 20.0084
GLN 30.0097
LEU 40.0084
VAL 50.0080
GLU 60.0080
SER 70.0044
GLY 80.0075
GLY 90.0055
GLY 100.0146
LEU 110.0136
VAL 120.0245
LYS 130.0371
PRO 140.0454
GLY 150.0544
GLY 160.0409
SER 170.0328
LEU 180.0220
LYS 190.0108
LEU 200.0054
SER 210.0020
CYS 220.0071
ALA 230.0076
ALA 240.0083
SER 250.0107
GLY 260.0102
PHE 270.0096
ILE 280.0101
PHE 290.0100
SER 300.0106
ASP 310.0085
TYR 320.0079
TYR 330.0078
MET 340.0082
TYR 350.0083
TRP 360.0084
VAL 370.0104
ARG 380.0078
GLN 390.0068
THR 400.0127
PRO 410.0142
GLU 420.0109
LYS 430.0046
ARG 440.0048
LEU 450.0050
GLU 460.0093
TRP 470.0100
VAL 480.0095
ALA 490.0097
THR 500.0097
ILE 510.0095
SER 520.0099
ASP 520.0105
GLY 530.0119
ASN 540.0138
SER 550.0116
TYR 560.0112
THR 570.0108
TYR 580.0108
TYR 590.0126
VAL 600.0169
ASP 610.0287
SER 620.0312
VAL 630.0241
LYS 640.0274
GLY 650.0268
ARG 660.0272
PHE 670.0171
THR 680.0113
ILE 690.0072
SER 700.0087
ARG 710.0087
ASP 720.0091
ASN 730.0119
ALA 740.0125
LYS 750.0104
ASN 760.0091
ASN 770.0074
LEU 780.0072
TYR 790.0049
LEU 800.0090
GLN 810.0121
MET 820.0214
SER 820.0323
SER 820.0413
LEU 820.0343
LYS 830.0390
SER 840.0363
GLU 850.0338
ASP 860.0230
THR 870.0151
ALA 880.0107
ILE 890.0098
TYR 900.0096
TYR 910.0079
CYS 920.0082
ALA 930.0082
ARG 940.0064
ASP 950.0040
GLY 960.0042
PRO 970.0075
THR 980.0084
ASP 990.0066
SER 1000.0036
SER 1000.0025
GLY 1000.0036
TYR 1000.0042
GLY 1000.0042
GLY 1000.0025
PHE 1000.0035
GLY 1010.0030
TYR 1020.0053
TRP 1030.0066
GLY 1040.0081
GLN 1050.0086
GLY 1060.0105
THR 1070.0085
LEU 1080.0087
VAL 1090.0095
THR 1100.0122
VAL 1110.0228
SER 1120.0263
GLU 1130.0300
ALA 1140.0177
LYS 1150.0220
THR 1160.0176
THR 1170.0176
PRO 1180.0134
PRO 1190.0134
SER 1200.0105
VAL 1210.0073
TYR 1220.0036
PRO 1230.0025
LEU 1240.0046
ALA 1250.0043
PRO 1260.0043
GLY 1270.0063
SER 1280.0129
ALA 1290.0213
ALA 1300.0163
GLN 1330.0360
THR 1340.0275
ASN 1350.0301
SER 1360.0177
MET 1370.0120
VAL 1380.0074
THR 1390.0035
LEU 1400.0035
GLY 1410.0041
CYS 1420.0041
LEU 1430.0069
VAL 1440.0099
LYS 1450.0127
GLY 1460.0131
TYR 1470.0157
PHE 1480.0196
PRO 1490.0209
GLU 1500.0257
PRO 1510.0324
VAL 1520.0265
THR 1530.0277
VAL 1540.0110
THR 1560.0065
TRP 1570.0017
ASN 1620.0032
SER 1630.0047
GLY 1640.0022
SER 1650.0043
LEU 1660.0044
SER 1670.0046
SER 1680.0055
GLY 1690.0063
VAL 1710.0075
HIS 1720.0064
THR 1730.0052
PHE 1740.0068
PRO 1750.0073
ALA 1760.0146
VAL 1770.0168
LEU 1780.0194
GLN 1790.0199
SER 1800.0209
ASP 1830.0187
LEU 1840.0183
TYR 1850.0207
THR 1860.0151
LEU 1870.0117
SER 1880.0073
SER 1890.0048
SER 1900.0048
VAL 1910.0042
THR 1920.0053
VAL 1930.0046
PRO 1940.0051
SER 1950.0064
SER 1960.0054
PRO 1980.0038
ARG 1990.0028
PRO 2000.0026
SER 2020.0020
GLU 2030.0020
THR 2040.0018
VAL 2050.0016
THR 2060.0023
CYS 2080.0045
ASN 2090.0114
VAL 2100.0166
ALA 2110.0270
HIS 2120.0265
PRO 2130.0354
ALA 2140.0309
SER 2150.0232
SER 2160.0305
THR 2170.0266
LYS 2180.0274
VAL 2190.0185
ASP 2200.0098
LYS 2210.0064
LYS 2220.0049
ILE 2230.0011
VAL 2260.0022
PRO 2270.0039
ARG 2280.0046
ASP 2320.0128
CYS 2330.0316
SER 20.0180
VAL 30.0167
LEU 40.0134
SER 50.0110
GLN 60.0072
SER 70.0061
PRO 80.0137
ALA 90.0170
ILE 100.0208
LEU 110.0192
SER 120.0230
ALA 130.0179
SER 140.0185
PRO 150.0099
GLY 160.0247
GLU 170.0278
LYS 180.0276
VAL 190.0171
THR 200.0101
MET 210.0031
THR 220.0038
CYS 230.0095
ARG 240.0133
ALA 250.0172
ARG 260.0238
SER 270.0240
SER 290.0196
VAL 300.0155
SER 310.0143
TYR 320.0095
MET 330.0096
HIS 340.0084
TRP 350.0097
TYR 360.0113
GLN 370.0137
GLN 380.0114
LYS 390.0151
SER 400.0150
GLY 410.0121
SER 420.0109
SER 430.0080
PRO 440.0105
LYS 450.0103
PRO 460.0108
TRP 470.0149
ILE 480.0119
HIS 490.0097
ALA 500.0107
THR 510.0097
SER 520.0109
ASN 530.0138
LEU 540.0191
ALA 550.0222
SER 560.0428
GLY 570.0487
VAL 580.0342
PRO 590.0378
ALA 600.0401
ARG 610.0320
PHE 620.0208
SER 630.0181
GLY 640.0113
SER 650.0127
GLY 660.0134
SER 670.0161
GLY 680.0200
THR 690.0183
SER 700.0153
TYR 710.0098
SER 720.0082
LEU 730.0092
THR 740.0143
ILE 750.0180
SER 760.0294
ARG 770.0283
VAL 780.0123
GLU 790.0136
ALA 800.0128
GLU 810.0219
ASP 820.0156
ALA 830.0184
ALA 840.0178
THR 850.0150
TYR 860.0098
TYR 870.0093
CYS 880.0086
GLN 890.0088
GLN 900.0079
TRP 910.0048
SER 920.0052
SER 930.0064
HIS 940.0062
PRO 950.0058
PRO 960.0041
THR 970.0080
PHE 980.0065
GLY 990.0076
SER 1000.0070
GLY 1010.0119
THR 1020.0108
LYS 1030.0170
LEU 1040.0157
GLU 1050.0212
ILE 1060.0180
LYS 1070.0227
ARG 1080.0227
ALA 1090.0266
ASP 1100.0197
ALA 1110.0153
ALA 1120.0094
PRO 1130.0064
THR 1140.0062
VAL 1150.0059
SER 1160.0068
ILE 1170.0059
PHE 1180.0052
PRO 1190.0042
PRO 1200.0024
SER 1210.0023
SER 1220.0031
GLU 1230.0018
GLN 1240.0018
LEU 1250.0074
THR 1260.0106
SER 1270.0119
GLY 1280.0135
GLY 1290.0082
ALA 1300.0036
SER 1310.0033
VAL 1320.0044
VAL 1330.0056
CYS 1340.0051
PHE 1350.0064
LEU 1360.0066
ASN 1370.0135
ASN 1380.0165
PHE 1390.0160
TYR 1400.0220
PRO 1410.0244
LYS 1420.0259
ASP 1430.0253
ILE 1440.0163
ASN 1450.0120
VAL 1460.0035
LYS 1470.0034
TRP 1480.0049
LYS 1490.0078
ILE 1500.0075
ASP 1510.0111
GLY 1520.0122
SER 1530.0129
GLU 1540.0095
ARG 1550.0092
GLN 1560.0074
ASN 1570.0096
GLY 1580.0122
VAL 1590.0105
LEU 1600.0102
ASN 1610.0062
SER 1620.0064
TRP 1630.0083
THR 1640.0146
ASP 1650.0197
GLN 1660.0233
ASP 1670.0259
SER 1680.0217
LYS 1690.0244
ASP 1700.0269
SER 1710.0256
THR 1720.0259
TYR 1730.0210
SER 1740.0159
MET 1750.0115
SER 1760.0064
SER 1770.0058
THR 1780.0064
LEU 1790.0054
THR 1800.0044
LEU 1810.0053
THR 1820.0118
LYS 1830.0134
ASP 1840.0173
GLU 1850.0120
TYR 1860.0103
GLU 1870.0154
ARG 1880.0157
HIS 1890.0136
ASN 1900.0151
SER 1910.0107
TYR 1920.0079
THR 1930.0086
CYS 1940.0049
GLU 1950.0029
ALA 1960.0047
THR 1970.0150
HIS 1980.0176
LYS 1990.0253
THR 2000.0185
SER 2010.0313
THR 2020.0559
SER 2030.0303
PRO 2040.0160
ILE 2050.0085
VAL 2060.0075
LYS 2070.0072
SER 2080.0072
PHE 2090.0103
ASN 2100.0122
ARG 2110.0111
ASN 2120.0172
GLU 2130.0052
CYS 2140.0098

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.