CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J4W Structure of a Plasmodium vivax apical membrane antigen 1-Fab F8.12.19 complex  ***

<R2> analysis for 2608162333311823063

---  normal mode 29  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.1041
ILE 4210.0352
PHE 4220.0391
ILE 4230.0169
SER 4240.0116
ASN 4250.0086
ASP 4260.0068
LYS 4270.0087
GLU 4280.0096
SER 4290.0104
ILE 4300.0109
LYS 4310.0104
CYS 4320.0099
PRO 4330.0058
CYS 4340.0058
GLU 4350.0066
PRO 4360.0091
GLU 4370.0089
ARG 4380.0088
ILE 4390.0103
SER 4400.0076
GLU 4410.0113
SER 4420.0110
THR 4430.0062
CYS 4440.0067
ASN 4450.0044
PHE 4460.0082
TYR 4470.0105
VAL 4480.0125
CYS 4490.0101
ASN 4500.0065
CYS 4510.0021
VAL 4520.0042
GLU 4530.0026
LYS 4540.0058
GLU 10.0232
VAL 20.0144
GLN 30.0120
LEU 40.0050
VAL 50.0040
GLU 60.0023
SER 70.0079
GLY 80.0090
GLY 90.0085
GLY 100.0196
LEU 110.0210
VAL 120.0210
LYS 130.0260
PRO 140.0175
GLY 150.0118
GLY 160.0138
SER 170.0138
LEU 180.0140
LYS 190.0080
LEU 200.0042
SER 210.0033
CYS 220.0044
ALA 230.0067
ALA 240.0085
SER 250.0142
GLY 260.0157
PHE 270.0143
ILE 280.0138
PHE 290.0119
SER 300.0115
ASP 310.0107
TYR 320.0092
TYR 330.0083
MET 340.0057
TYR 350.0057
TRP 360.0054
VAL 370.0050
ARG 380.0061
GLN 390.0083
THR 400.0118
PRO 410.0178
GLU 420.0198
LYS 430.0101
ARG 440.0091
LEU 450.0050
GLU 460.0092
TRP 470.0085
VAL 480.0081
ALA 490.0093
THR 500.0083
ILE 510.0086
SER 520.0090
ASP 520.0103
GLY 530.0124
ASN 540.0133
SER 550.0136
TYR 560.0103
THR 570.0116
TYR 580.0122
TYR 590.0147
VAL 600.0168
ASP 610.0337
SER 620.0283
VAL 630.0214
LYS 640.0290
GLY 650.0300
ARG 660.0210
PHE 670.0142
THR 680.0141
ILE 690.0096
SER 700.0058
ARG 710.0070
ASP 720.0088
ASN 730.0114
ALA 740.0135
LYS 750.0138
ASN 760.0107
ASN 770.0084
LEU 780.0062
TYR 790.0061
LEU 800.0068
GLN 810.0108
MET 820.0116
SER 820.0125
SER 820.0089
LEU 820.0014
LYS 830.0089
SER 840.0159
GLU 850.0177
ASP 860.0094
THR 870.0113
ALA 880.0081
ILE 890.0062
TYR 900.0029
TYR 910.0035
CYS 920.0030
ALA 930.0032
ARG 940.0055
ASP 950.0045
GLY 960.0048
PRO 970.0051
THR 980.0054
ASP 990.0031
SER 1000.0019
SER 1000.0024
GLY 1000.0028
TYR 1000.0020
GLY 1000.0015
GLY 1000.0017
PHE 1000.0029
GLY 1010.0033
TYR 1020.0047
TRP 1030.0013
GLY 1040.0016
GLN 1050.0019
GLY 1060.0046
THR 1070.0069
LEU 1080.0083
VAL 1090.0127
THR 1100.0165
VAL 1110.0169
SER 1120.0289
GLU 1130.0326
ALA 1140.0237
LYS 1150.0202
THR 1160.0165
THR 1170.0172
PRO 1180.0129
PRO 1190.0154
SER 1200.0213
VAL 1210.0149
TYR 1220.0150
PRO 1230.0124
LEU 1240.0089
ALA 1250.0090
PRO 1260.0093
GLY 1270.0130
SER 1280.0098
ALA 1290.0131
ALA 1300.0249
GLN 1330.0642
THR 1340.0448
ASN 1350.0435
SER 1360.0155
MET 1370.0094
VAL 1380.0063
THR 1390.0085
LEU 1400.0080
GLY 1410.0093
CYS 1420.0106
LEU 1430.0131
VAL 1440.0138
LYS 1450.0211
GLY 1460.0269
TYR 1470.0212
PHE 1480.0206
PRO 1490.0242
GLU 1500.0261
PRO 1510.0236
VAL 1520.0149
THR 1530.0140
VAL 1540.0069
THR 1560.0083
TRP 1570.0103
ASN 1620.0116
SER 1630.0111
GLY 1640.0106
SER 1650.0131
LEU 1660.0112
SER 1670.0097
SER 1680.0113
GLY 1690.0096
VAL 1710.0054
HIS 1720.0028
THR 1730.0017
PHE 1740.0062
PRO 1750.0179
ALA 1760.0246
VAL 1770.0376
LEU 1780.0549
GLN 1790.0711
SER 1800.1041
ASP 1830.0627
LEU 1840.0460
TYR 1850.0338
THR 1860.0239
LEU 1870.0138
SER 1880.0080
SER 1890.0042
SER 1900.0067
VAL 1910.0091
THR 1920.0130
VAL 1930.0112
PRO 1940.0135
SER 1950.0250
SER 1960.0377
PRO 1980.0199
ARG 1990.0147
PRO 2000.0148
SER 2020.0217
GLU 2030.0143
THR 2040.0039
VAL 2050.0092
THR 2060.0099
CYS 2080.0111
ASN 2090.0102
VAL 2100.0078
ALA 2110.0136
HIS 2120.0127
PRO 2130.0198
ALA 2140.0198
SER 2150.0120
SER 2160.0185
THR 2170.0132
LYS 2180.0163
VAL 2190.0174
ASP 2200.0127
LYS 2210.0137
LYS 2220.0148
ILE 2230.0123
VAL 2260.0150
PRO 2270.0166
ARG 2280.0132
ASP 2320.0178
CYS 2330.0415
SER 20.0129
VAL 30.0131
LEU 40.0102
SER 50.0101
GLN 60.0089
SER 70.0090
PRO 80.0097
ALA 90.0116
ILE 100.0135
LEU 110.0127
SER 120.0163
ALA 130.0163
SER 140.0195
PRO 150.0175
GLY 160.0140
GLU 170.0143
LYS 180.0111
VAL 190.0105
THR 200.0078
MET 210.0082
THR 220.0071
CYS 230.0086
ARG 240.0097
ALA 250.0115
ARG 260.0178
SER 270.0169
SER 290.0133
VAL 300.0104
SER 310.0086
TYR 320.0053
MET 330.0054
HIS 340.0047
TRP 350.0054
TYR 360.0056
GLN 370.0057
GLN 380.0066
LYS 390.0092
SER 400.0094
GLY 410.0155
SER 420.0112
SER 430.0057
PRO 440.0042
LYS 450.0056
PRO 460.0054
TRP 470.0058
ILE 480.0057
HIS 490.0058
ALA 500.0049
THR 510.0055
SER 520.0061
ASN 530.0080
LEU 540.0082
ALA 550.0079
SER 560.0119
GLY 570.0123
VAL 580.0096
PRO 590.0108
ALA 600.0101
ARG 610.0072
PHE 620.0068
SER 630.0070
GLY 640.0068
SER 650.0049
GLY 660.0063
SER 670.0078
GLY 680.0097
THR 690.0107
SER 700.0083
TYR 710.0065
SER 720.0064
LEU 730.0062
THR 740.0070
ILE 750.0074
SER 760.0078
ARG 770.0098
VAL 780.0121
GLU 790.0145
ALA 800.0179
GLU 810.0170
ASP 820.0121
ALA 830.0122
ALA 840.0114
THR 850.0095
TYR 860.0060
TYR 870.0058
CYS 880.0058
GLN 890.0054
GLN 900.0042
TRP 910.0025
SER 920.0046
SER 930.0055
HIS 940.0037
PRO 950.0047
PRO 960.0035
THR 970.0054
PHE 980.0044
GLY 990.0065
SER 1000.0067
GLY 1010.0098
THR 1020.0090
LYS 1030.0114
LEU 1040.0131
GLU 1050.0163
ILE 1060.0181
LYS 1070.0213
ARG 1080.0244
ALA 1090.0267
ASP 1100.0204
ALA 1110.0182
ALA 1120.0134
PRO 1130.0077
THR 1140.0079
VAL 1150.0072
SER 1160.0082
ILE 1170.0083
PHE 1180.0084
PRO 1190.0070
PRO 1200.0097
SER 1210.0114
SER 1220.0172
GLU 1230.0169
GLN 1240.0171
LEU 1250.0181
THR 1260.0276
SER 1270.0305
GLY 1280.0189
GLY 1290.0182
ALA 1300.0123
SER 1310.0131
VAL 1320.0105
VAL 1330.0109
CYS 1340.0100
PHE 1350.0089
LEU 1360.0082
ASN 1370.0089
ASN 1380.0109
PHE 1390.0095
TYR 1400.0149
PRO 1410.0130
LYS 1420.0096
ASP 1430.0061
ILE 1440.0048
ASN 1450.0049
VAL 1460.0125
LYS 1470.0113
TRP 1480.0102
LYS 1490.0131
ILE 1500.0128
ASP 1510.0134
GLY 1520.0166
SER 1530.0138
GLU 1540.0196
ARG 1550.0173
GLN 1560.0164
ASN 1570.0179
GLY 1580.0173
VAL 1590.0143
LEU 1600.0159
ASN 1610.0078
SER 1620.0051
TRP 1630.0032
THR 1640.0084
ASP 1650.0109
GLN 1660.0124
ASP 1670.0199
SER 1680.0239
LYS 1690.0337
ASP 1700.0287
SER 1710.0221
THR 1720.0178
TYR 1730.0101
SER 1740.0085
MET 1750.0074
SER 1760.0095
SER 1770.0107
THR 1780.0132
LEU 1790.0148
THR 1800.0164
LEU 1810.0122
THR 1820.0174
LYS 1830.0057
ASP 1840.0133
GLU 1850.0196
TYR 1860.0124
GLU 1870.0154
ARG 1880.0260
HIS 1890.0206
ASN 1900.0153
SER 1910.0075
TYR 1920.0061
THR 1930.0080
CYS 1940.0096
GLU 1950.0084
ALA 1960.0086
THR 1970.0028
HIS 1980.0070
LYS 1990.0122
THR 2000.0167
SER 2010.0174
THR 2020.0208
SER 2030.0060
PRO 2040.0027
ILE 2050.0073
VAL 2060.0067
LYS 2070.0063
SER 2080.0064
PHE 2090.0016
ASN 2100.0071
ARG 2110.0111
ASN 2120.0198
GLU 2130.0199
CYS 2140.0262

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.