CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J4W Structure of a Plasmodium vivax apical membrane antigen 1-Fab F8.12.19 complex  ***

<R2> analysis for 2608162333311823063

---  normal mode 35  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0835
ILE 4210.0835
PHE 4220.0827
ILE 4230.0306
SER 4240.0218
ASN 4250.0327
ASP 4260.0286
LYS 4270.0178
GLU 4280.0168
SER 4290.0142
ILE 4300.0104
LYS 4310.0085
CYS 4320.0087
PRO 4330.0035
CYS 4340.0026
GLU 4350.0057
PRO 4360.0144
GLU 4370.0134
ARG 4380.0145
ILE 4390.0094
SER 4400.0113
GLU 4410.0387
SER 4420.0659
THR 4430.0797
CYS 4440.0632
ASN 4450.0310
PHE 4460.0329
TYR 4470.0280
VAL 4480.0274
CYS 4490.0163
ASN 4500.0072
CYS 4510.0046
VAL 4520.0072
GLU 4530.0075
LYS 4540.0090
GLU 10.0552
VAL 20.0305
GLN 30.0271
LEU 40.0150
VAL 50.0186
GLU 60.0182
SER 70.0196
GLY 80.0169
GLY 90.0144
GLY 100.0142
LEU 110.0120
VAL 120.0174
LYS 130.0304
PRO 140.0271
GLY 150.0273
GLY 160.0212
SER 170.0174
LEU 180.0141
LYS 190.0130
LEU 200.0142
SER 210.0170
CYS 220.0177
ALA 230.0168
ALA 240.0106
SER 250.0099
GLY 260.0238
PHE 270.0240
ILE 280.0212
PHE 290.0107
SER 300.0188
ASP 310.0170
TYR 320.0105
TYR 330.0059
MET 340.0024
TYR 350.0046
TRP 360.0077
VAL 370.0057
ARG 380.0067
GLN 390.0075
THR 400.0142
PRO 410.0232
GLU 420.0224
LYS 430.0100
ARG 440.0087
LEU 450.0052
GLU 460.0070
TRP 470.0061
VAL 480.0064
ALA 490.0083
THR 500.0047
ILE 510.0065
SER 520.0118
ASP 520.0184
GLY 530.0254
ASN 540.0270
SER 550.0202
TYR 560.0161
THR 570.0150
TYR 580.0083
TYR 590.0098
VAL 600.0107
ASP 610.0133
SER 620.0096
VAL 630.0104
LYS 640.0135
GLY 650.0160
ARG 660.0134
PHE 670.0087
THR 680.0075
ILE 690.0070
SER 700.0117
ARG 710.0127
ASP 720.0192
ASN 730.0204
ALA 740.0276
LYS 750.0241
ASN 760.0099
ASN 770.0146
LEU 780.0124
TYR 790.0145
LEU 800.0097
GLN 810.0086
MET 820.0129
SER 820.0153
SER 820.0166
LEU 820.0129
LYS 830.0147
SER 840.0172
GLU 850.0139
ASP 860.0100
THR 870.0110
ALA 880.0103
ILE 890.0113
TYR 900.0101
TYR 910.0077
CYS 920.0071
ALA 930.0066
ARG 940.0044
ASP 950.0051
GLY 960.0099
PRO 970.0069
THR 980.0073
ASP 990.0084
SER 1000.0071
SER 1000.0058
GLY 1000.0047
TYR 1000.0043
GLY 1000.0040
GLY 1000.0051
PHE 1000.0056
GLY 1010.0066
TYR 1020.0070
TRP 1030.0072
GLY 1040.0091
GLN 1050.0115
GLY 1060.0153
THR 1070.0138
LEU 1080.0125
VAL 1090.0111
THR 1100.0102
VAL 1110.0137
SER 1120.0266
GLU 1130.0365
ALA 1140.0258
LYS 1150.0195
THR 1160.0129
THR 1170.0119
PRO 1180.0083
PRO 1190.0067
SER 1200.0066
VAL 1210.0022
TYR 1220.0016
PRO 1230.0059
LEU 1240.0041
ALA 1250.0035
PRO 1260.0036
GLY 1270.0073
SER 1280.0113
ALA 1290.0158
ALA 1300.0097
GLN 1330.0148
THR 1340.0116
ASN 1350.0089
SER 1360.0088
MET 1370.0057
VAL 1380.0050
THR 1390.0013
LEU 1400.0010
GLY 1410.0013
CYS 1420.0035
LEU 1430.0030
VAL 1440.0036
LYS 1450.0069
GLY 1460.0062
TYR 1470.0073
PHE 1480.0109
PRO 1490.0089
GLU 1500.0061
PRO 1510.0051
VAL 1520.0067
THR 1530.0071
VAL 1540.0073
THR 1560.0101
TRP 1570.0095
ASN 1620.0126
SER 1630.0159
GLY 1640.0166
SER 1650.0170
LEU 1660.0129
SER 1670.0140
SER 1680.0134
GLY 1690.0075
VAL 1710.0018
HIS 1720.0009
THR 1730.0025
PHE 1740.0017
PRO 1750.0025
ALA 1760.0024
VAL 1770.0040
LEU 1780.0048
GLN 1790.0062
SER 1800.0203
ASP 1830.0161
LEU 1840.0126
TYR 1850.0086
THR 1860.0042
LEU 1870.0035
SER 1880.0037
SER 1890.0019
SER 1900.0011
VAL 1910.0027
THR 1920.0019
VAL 1930.0027
PRO 1940.0067
SER 1950.0104
SER 1960.0118
PRO 1980.0060
ARG 1990.0052
PRO 2000.0046
SER 2020.0055
GLU 2030.0057
THR 2040.0044
VAL 2050.0055
THR 2060.0065
CYS 2080.0080
ASN 2090.0096
VAL 2100.0091
ALA 2110.0081
HIS 2120.0072
PRO 2130.0064
ALA 2140.0061
SER 2150.0084
SER 2160.0082
THR 2170.0099
LYS 2180.0107
VAL 2190.0110
ASP 2200.0073
LYS 2210.0052
LYS 2220.0047
ILE 2230.0031
VAL 2260.0038
PRO 2270.0042
ARG 2280.0051
ASP 2320.0167
CYS 2330.0261
SER 20.0045
VAL 30.0069
LEU 40.0062
SER 50.0102
GLN 60.0087
SER 70.0115
PRO 80.0146
ALA 90.0154
ILE 100.0157
LEU 110.0122
SER 120.0097
ALA 130.0091
SER 140.0084
PRO 150.0082
GLY 160.0095
GLU 170.0083
LYS 180.0094
VAL 190.0090
THR 200.0080
MET 210.0084
THR 220.0086
CYS 230.0074
ARG 240.0114
ALA 250.0100
ARG 260.0145
SER 270.0147
SER 290.0122
VAL 300.0084
SER 310.0099
TYR 320.0037
MET 330.0023
HIS 340.0038
TRP 350.0033
TYR 360.0053
GLN 370.0061
GLN 380.0044
LYS 390.0030
SER 400.0022
GLY 410.0026
SER 420.0030
SER 430.0053
PRO 440.0056
LYS 450.0057
PRO 460.0062
TRP 470.0076
ILE 480.0055
HIS 490.0059
ALA 500.0059
THR 510.0036
SER 520.0048
ASN 530.0066
LEU 540.0076
ALA 550.0101
SER 560.0188
GLY 570.0169
VAL 580.0114
PRO 590.0078
ALA 600.0054
ARG 610.0071
PHE 620.0056
SER 630.0026
GLY 640.0018
SER 650.0064
GLY 660.0109
SER 670.0151
GLY 680.0162
THR 690.0147
SER 700.0137
TYR 710.0072
SER 720.0057
LEU 730.0037
THR 740.0071
ILE 750.0083
SER 760.0085
ARG 770.0100
VAL 780.0090
GLU 790.0095
ALA 800.0045
GLU 810.0062
ASP 820.0080
ALA 830.0070
ALA 840.0071
THR 850.0075
TYR 860.0057
TYR 870.0043
CYS 880.0030
GLN 890.0036
GLN 900.0032
TRP 910.0032
SER 920.0048
SER 930.0055
HIS 940.0055
PRO 950.0057
PRO 960.0046
THR 970.0037
PHE 980.0040
GLY 990.0027
SER 1000.0039
GLY 1010.0090
THR 1020.0093
LYS 1030.0108
LEU 1040.0102
GLU 1050.0077
ILE 1060.0054
LYS 1070.0125
ARG 1080.0158
ALA 1090.0226
ASP 1100.0212
ALA 1110.0182
ALA 1120.0146
PRO 1130.0082
THR 1140.0095
VAL 1150.0096
SER 1160.0077
ILE 1170.0088
PHE 1180.0086
PRO 1190.0087
PRO 1200.0105
SER 1210.0140
SER 1220.0250
GLU 1230.0210
GLN 1240.0183
LEU 1250.0264
THR 1260.0407
SER 1270.0430
GLY 1280.0311
GLY 1290.0245
ALA 1300.0147
SER 1310.0108
VAL 1320.0087
VAL 1330.0087
CYS 1340.0086
PHE 1350.0065
LEU 1360.0065
ASN 1370.0066
ASN 1380.0082
PHE 1390.0075
TYR 1400.0123
PRO 1410.0124
LYS 1420.0085
ASP 1430.0088
ILE 1440.0072
ASN 1450.0135
VAL 1460.0140
LYS 1470.0134
TRP 1480.0113
LYS 1490.0094
ILE 1500.0054
ASP 1510.0053
GLY 1520.0035
SER 1530.0045
GLU 1540.0086
ARG 1550.0110
GLN 1560.0138
ASN 1570.0185
GLY 1580.0082
VAL 1590.0092
LEU 1600.0082
ASN 1610.0049
SER 1620.0029
TRP 1630.0026
THR 1640.0030
ASP 1650.0030
GLN 1660.0020
ASP 1670.0064
SER 1680.0081
LYS 1690.0139
ASP 1700.0136
SER 1710.0081
THR 1720.0089
TYR 1730.0040
SER 1740.0043
MET 1750.0048
SER 1760.0065
SER 1770.0069
THR 1780.0079
LEU 1790.0106
THR 1800.0141
LEU 1810.0140
THR 1820.0256
LYS 1830.0163
ASP 1840.0155
GLU 1850.0192
TYR 1860.0113
GLU 1870.0082
ARG 1880.0194
HIS 1890.0141
ASN 1900.0101
SER 1910.0031
TYR 1920.0050
THR 1930.0099
CYS 1940.0132
GLU 1950.0149
ALA 1960.0149
THR 1970.0137
HIS 1980.0088
LYS 1990.0128
THR 2000.0154
SER 2010.0130
THR 2020.0106
SER 2030.0194
PRO 2040.0195
ILE 2050.0168
VAL 2060.0146
LYS 2070.0114
SER 2080.0100
PHE 2090.0088
ASN 2100.0078
ARG 2110.0068
ASN 2120.0154
GLU 2130.0154
CYS 2140.0168

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.