CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J4W Structure of a Plasmodium vivax apical membrane antigen 1-Fab F8.12.19 complex  ***

<R2> analysis for 2608162333311823063

---  normal mode 41  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0728
ILE 4210.0126
PHE 4220.0115
ILE 4230.0097
SER 4240.0100
ASN 4250.0114
ASP 4260.0112
LYS 4270.0064
GLU 4280.0056
SER 4290.0056
ILE 4300.0047
LYS 4310.0039
CYS 4320.0053
PRO 4330.0063
CYS 4340.0061
GLU 4350.0062
PRO 4360.0062
GLU 4370.0074
ARG 4380.0095
ILE 4390.0126
SER 4400.0081
GLU 4410.0070
SER 4420.0220
THR 4430.0140
CYS 4440.0081
ASN 4450.0104
PHE 4460.0109
TYR 4470.0113
VAL 4480.0067
CYS 4490.0059
ASN 4500.0052
CYS 4510.0074
VAL 4520.0094
GLU 4530.0090
LYS 4540.0102
GLU 10.0101
VAL 20.0059
GLN 30.0031
LEU 40.0017
VAL 50.0017
GLU 60.0017
SER 70.0075
GLY 80.0078
GLY 90.0125
GLY 100.0216
LEU 110.0223
VAL 120.0220
LYS 130.0222
PRO 140.0202
GLY 150.0178
GLY 160.0158
SER 170.0118
LEU 180.0113
LYS 190.0053
LEU 200.0058
SER 210.0055
CYS 220.0041
ALA 230.0039
ALA 240.0041
SER 250.0042
GLY 260.0064
PHE 270.0071
ILE 280.0083
PHE 290.0063
SER 300.0060
ASP 310.0051
TYR 320.0043
TYR 330.0036
MET 340.0041
TYR 350.0044
TRP 360.0044
VAL 370.0055
ARG 380.0077
GLN 390.0090
THR 400.0135
PRO 410.0230
GLU 420.0263
LYS 430.0132
ARG 440.0112
LEU 450.0061
GLU 460.0092
TRP 470.0086
VAL 480.0083
ALA 490.0060
THR 500.0053
ILE 510.0040
SER 520.0039
ASP 520.0032
GLY 530.0027
ASN 540.0027
SER 550.0024
TYR 560.0036
THR 570.0046
TYR 580.0064
TYR 590.0083
VAL 600.0116
ASP 610.0222
SER 620.0193
VAL 630.0112
LYS 640.0135
GLY 650.0113
ARG 660.0047
PHE 670.0038
THR 680.0030
ILE 690.0037
SER 700.0033
ARG 710.0038
ASP 720.0057
ASN 730.0076
ALA 740.0105
LYS 750.0097
ASN 760.0068
ASN 770.0054
LEU 780.0041
TYR 790.0047
LEU 800.0043
GLN 810.0030
MET 820.0059
SER 820.0063
SER 820.0068
LEU 820.0096
LYS 830.0113
SER 840.0162
GLU 850.0138
ASP 860.0111
THR 870.0130
ALA 880.0107
ILE 890.0090
TYR 900.0063
TYR 910.0034
CYS 920.0032
ALA 930.0033
ARG 940.0048
ASP 950.0045
GLY 960.0066
PRO 970.0118
THR 980.0127
ASP 990.0146
SER 1000.0080
SER 1000.0062
GLY 1000.0047
TYR 1000.0045
GLY 1000.0030
GLY 1000.0043
PHE 1000.0052
GLY 1010.0068
TYR 1020.0080
TRP 1030.0027
GLY 1040.0017
GLN 1050.0016
GLY 1060.0089
THR 1070.0087
LEU 1080.0125
VAL 1090.0164
THR 1100.0191
VAL 1110.0190
SER 1120.0249
GLU 1130.0259
ALA 1140.0289
LYS 1150.0289
THR 1160.0272
THR 1170.0202
PRO 1180.0122
PRO 1190.0102
SER 1200.0082
VAL 1210.0102
TYR 1220.0093
PRO 1230.0087
LEU 1240.0066
ALA 1250.0035
PRO 1260.0067
GLY 1270.0169
SER 1280.0203
ALA 1290.0246
ALA 1300.0375
GLN 1330.0552
THR 1340.0290
ASN 1350.0309
SER 1360.0201
MET 1370.0201
VAL 1380.0127
THR 1390.0050
LEU 1400.0068
GLY 1410.0098
CYS 1420.0121
LEU 1430.0099
VAL 1440.0092
LYS 1450.0066
GLY 1460.0069
TYR 1470.0130
PHE 1480.0232
PRO 1490.0254
GLU 1500.0264
PRO 1510.0211
VAL 1520.0168
THR 1530.0220
VAL 1540.0152
THR 1560.0171
TRP 1570.0107
ASN 1620.0179
SER 1630.0244
GLY 1640.0368
SER 1650.0475
LEU 1660.0322
SER 1670.0380
SER 1680.0267
GLY 1690.0094
VAL 1710.0112
HIS 1720.0107
THR 1730.0129
PHE 1740.0110
PRO 1750.0078
ALA 1760.0057
VAL 1770.0131
LEU 1780.0153
GLN 1790.0129
SER 1800.0215
ASP 1830.0215
LEU 1840.0159
TYR 1850.0157
THR 1860.0055
LEU 1870.0089
SER 1880.0129
SER 1890.0142
SER 1900.0100
VAL 1910.0065
THR 1920.0077
VAL 1930.0159
PRO 1940.0237
SER 1950.0239
SER 1960.0252
PRO 1980.0207
ARG 1990.0205
PRO 2000.0253
SER 2020.0346
GLU 2030.0264
THR 2040.0259
VAL 2050.0073
THR 2060.0047
CYS 2080.0091
ASN 2090.0128
VAL 2100.0169
ALA 2110.0267
HIS 2120.0226
PRO 2130.0275
ALA 2140.0284
SER 2150.0185
SER 2160.0216
THR 2170.0203
LYS 2180.0279
VAL 2190.0246
ASP 2200.0116
LYS 2210.0096
LYS 2220.0062
ILE 2230.0032
VAL 2260.0123
PRO 2270.0129
ARG 2280.0133
ASP 2320.0543
CYS 2330.0728
SER 20.0161
VAL 30.0131
LEU 40.0093
SER 50.0088
GLN 60.0106
SER 70.0149
PRO 80.0190
ALA 90.0198
ILE 100.0191
LEU 110.0145
SER 120.0100
ALA 130.0136
SER 140.0242
PRO 150.0297
GLY 160.0369
GLU 170.0292
LYS 180.0233
VAL 190.0178
THR 200.0097
MET 210.0115
THR 220.0133
CYS 230.0125
ARG 240.0137
ALA 250.0121
ARG 260.0399
SER 270.0250
SER 290.0161
VAL 300.0112
SER 310.0088
TYR 320.0077
MET 330.0083
HIS 340.0082
TRP 350.0091
TYR 360.0092
GLN 370.0098
GLN 380.0077
LYS 390.0072
SER 400.0070
GLY 410.0120
SER 420.0108
SER 430.0067
PRO 440.0080
LYS 450.0105
PRO 460.0101
TRP 470.0123
ILE 480.0123
HIS 490.0119
ALA 500.0117
THR 510.0121
SER 520.0151
ASN 530.0176
LEU 540.0176
ALA 550.0175
SER 560.0336
GLY 570.0255
VAL 580.0154
PRO 590.0065
ALA 600.0071
ARG 610.0087
PHE 620.0086
SER 630.0109
GLY 640.0128
SER 650.0153
GLY 660.0132
SER 670.0111
GLY 680.0151
THR 690.0166
SER 700.0173
TYR 710.0096
SER 720.0114
LEU 730.0124
THR 740.0138
ILE 750.0077
SER 760.0155
ARG 770.0259
VAL 780.0171
GLU 790.0228
ALA 800.0130
GLU 810.0154
ASP 820.0099
ALA 830.0095
ALA 840.0085
THR 850.0101
TYR 860.0087
TYR 870.0073
CYS 880.0067
GLN 890.0049
GLN 900.0051
TRP 910.0055
SER 920.0086
SER 930.0092
HIS 940.0084
PRO 950.0092
PRO 960.0070
THR 970.0054
PHE 980.0008
GLY 990.0035
SER 1000.0042
GLY 1010.0123
THR 1020.0124
LYS 1030.0131
LEU 1040.0104
GLU 1050.0097
ILE 1060.0108
LYS 1070.0167
ARG 1080.0214
ALA 1090.0240
ASP 1100.0271
ALA 1110.0231
ALA 1120.0212
PRO 1130.0108
THR 1140.0099
VAL 1150.0155
SER 1160.0126
ILE 1170.0121
PHE 1180.0120
PRO 1190.0058
PRO 1200.0051
SER 1210.0077
SER 1220.0121
GLU 1230.0128
GLN 1240.0118
LEU 1250.0139
THR 1260.0230
SER 1270.0249
GLY 1280.0165
GLY 1290.0110
ALA 1300.0046
SER 1310.0063
VAL 1320.0098
VAL 1330.0123
CYS 1340.0157
PHE 1350.0134
LEU 1360.0121
ASN 1370.0069
ASN 1380.0077
PHE 1390.0128
TYR 1400.0170
PRO 1410.0169
LYS 1420.0119
ASP 1430.0122
ILE 1440.0138
ASN 1450.0183
VAL 1460.0173
LYS 1470.0167
TRP 1480.0160
LYS 1490.0137
ILE 1500.0081
ASP 1510.0073
GLY 1520.0163
SER 1530.0218
GLU 1540.0235
ARG 1550.0173
GLN 1560.0159
ASN 1570.0182
GLY 1580.0083
VAL 1590.0097
LEU 1600.0101
ASN 1610.0114
SER 1620.0096
TRP 1630.0082
THR 1640.0038
ASP 1650.0035
GLN 1660.0071
ASP 1670.0111
SER 1680.0104
LYS 1690.0101
ASP 1700.0127
SER 1710.0125
THR 1720.0117
TYR 1730.0058
SER 1740.0059
MET 1750.0104
SER 1760.0140
SER 1770.0133
THR 1780.0123
LEU 1790.0099
THR 1800.0057
LEU 1810.0059
THR 1820.0112
LYS 1830.0092
ASP 1840.0102
GLU 1850.0107
TYR 1860.0064
GLU 1870.0069
ARG 1880.0123
HIS 1890.0111
ASN 1900.0098
SER 1910.0038
TYR 1920.0079
THR 1930.0145
CYS 1940.0217
GLU 1950.0210
ALA 1960.0183
THR 1970.0261
HIS 1980.0226
LYS 1990.0267
THR 2000.0341
SER 2010.0386
THR 2020.0563
SER 2030.0402
PRO 2040.0319
ILE 2050.0210
VAL 2060.0230
LYS 2070.0212
SER 2080.0187
PHE 2090.0062
ASN 2100.0108
ARG 2110.0107
ASN 2120.0398
GLU 2130.0449
CYS 2140.0497

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.