CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J4W Structure of a Plasmodium vivax apical membrane antigen 1-Fab F8.12.19 complex  ***

<R2> analysis for 2608162333311823063

---  normal mode 52  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0824
ILE 4210.0159
PHE 4220.0124
ILE 4230.0285
SER 4240.0348
ASN 4250.0387
ASP 4260.0400
LYS 4270.0293
GLU 4280.0219
SER 4290.0232
ILE 4300.0152
LYS 4310.0098
CYS 4320.0144
PRO 4330.0061
CYS 4340.0083
GLU 4350.0093
PRO 4360.0232
GLU 4370.0266
ARG 4380.0310
ILE 4390.0381
SER 4400.0180
GLU 4410.0156
SER 4420.0824
THR 4430.0210
CYS 4440.0608
ASN 4450.0422
PHE 4460.0389
TYR 4470.0400
VAL 4480.0232
CYS 4490.0198
ASN 4500.0224
CYS 4510.0163
VAL 4520.0204
GLU 4530.0184
LYS 4540.0423
GLU 10.0294
VAL 20.0157
GLN 30.0133
LEU 40.0069
VAL 50.0054
GLU 60.0041
SER 70.0089
GLY 80.0073
GLY 90.0113
GLY 100.0240
LEU 110.0207
VAL 120.0252
LYS 130.0388
PRO 140.0258
GLY 150.0236
GLY 160.0158
SER 170.0157
LEU 180.0160
LYS 190.0071
LEU 200.0054
SER 210.0029
CYS 220.0028
ALA 230.0044
ALA 240.0050
SER 250.0090
GLY 260.0024
PHE 270.0121
ILE 280.0203
PHE 290.0170
SER 300.0182
ASP 310.0121
TYR 320.0092
TYR 330.0061
MET 340.0048
TYR 350.0052
TRP 360.0058
VAL 370.0102
ARG 380.0099
GLN 390.0109
THR 400.0118
PRO 410.0132
GLU 420.0153
LYS 430.0134
ARG 440.0120
LEU 450.0118
GLU 460.0079
TRP 470.0079
VAL 480.0072
ALA 490.0079
THR 500.0062
ILE 510.0056
SER 520.0057
ASP 520.0089
GLY 530.0104
ASN 540.0083
SER 550.0036
TYR 560.0049
THR 570.0072
TYR 580.0076
TYR 590.0092
VAL 600.0089
ASP 610.0121
SER 620.0121
VAL 630.0124
LYS 640.0132
GLY 650.0147
ARG 660.0136
PHE 670.0134
THR 680.0124
ILE 690.0101
SER 700.0094
ARG 710.0116
ASP 720.0175
ASN 730.0283
ALA 740.0400
LYS 750.0341
ASN 760.0179
ASN 770.0126
LEU 780.0067
TYR 790.0050
LEU 800.0091
GLN 810.0125
MET 820.0152
SER 820.0128
SER 820.0093
LEU 820.0101
LYS 830.0074
SER 840.0087
GLU 850.0082
ASP 860.0100
THR 870.0117
ALA 880.0110
ILE 890.0112
TYR 900.0098
TYR 910.0070
CYS 920.0070
ALA 930.0090
ARG 940.0046
ASP 950.0023
GLY 960.0020
PRO 970.0106
THR 980.0151
ASP 990.0173
SER 1000.0065
SER 1000.0074
GLY 1000.0101
TYR 1000.0088
GLY 1000.0058
GLY 1000.0029
PHE 1000.0034
GLY 1010.0032
TYR 1020.0069
TRP 1030.0086
GLY 1040.0084
GLN 1050.0094
GLY 1060.0113
THR 1070.0102
LEU 1080.0122
VAL 1090.0151
THR 1100.0135
VAL 1110.0140
SER 1120.0181
GLU 1130.0325
ALA 1140.0117
LYS 1150.0136
THR 1160.0134
THR 1170.0183
PRO 1180.0186
PRO 1190.0110
SER 1200.0099
VAL 1210.0072
TYR 1220.0108
PRO 1230.0148
LEU 1240.0155
ALA 1250.0178
PRO 1260.0186
GLY 1270.0264
SER 1280.0238
ALA 1290.0434
ALA 1300.0362
GLN 1330.0463
THR 1340.0361
ASN 1350.0308
SER 1360.0263
MET 1370.0237
VAL 1380.0222
THR 1390.0134
LEU 1400.0140
GLY 1410.0158
CYS 1420.0102
LEU 1430.0076
VAL 1440.0033
LYS 1450.0074
GLY 1460.0103
TYR 1470.0113
PHE 1480.0119
PRO 1490.0108
GLU 1500.0118
PRO 1510.0078
VAL 1520.0072
THR 1530.0065
VAL 1540.0140
THR 1560.0268
TRP 1570.0192
ASN 1620.0270
SER 1630.0418
GLY 1640.0509
SER 1650.0589
LEU 1660.0375
SER 1670.0417
SER 1680.0262
GLY 1690.0077
VAL 1710.0064
HIS 1720.0029
THR 1730.0029
PHE 1740.0080
PRO 1750.0145
ALA 1760.0155
VAL 1770.0211
LEU 1780.0215
GLN 1790.0231
SER 1800.0258
ASP 1830.0064
LEU 1840.0081
TYR 1850.0124
THR 1860.0078
LEU 1870.0043
SER 1880.0025
SER 1890.0090
SER 1900.0082
VAL 1910.0066
THR 1920.0133
VAL 1930.0127
PRO 1940.0158
SER 1950.0193
SER 1960.0229
PRO 1980.0085
ARG 1990.0082
PRO 2000.0091
SER 2020.0165
GLU 2030.0159
THR 2040.0206
VAL 2050.0141
THR 2060.0183
CYS 2080.0195
ASN 2090.0175
VAL 2100.0158
ALA 2110.0103
HIS 2120.0138
PRO 2130.0241
ALA 2140.0214
SER 2150.0296
SER 2160.0383
THR 2170.0223
LYS 2180.0106
VAL 2190.0082
ASP 2200.0172
LYS 2210.0166
LYS 2220.0163
ILE 2230.0148
VAL 2260.0137
PRO 2270.0132
ARG 2280.0159
ASP 2320.0086
CYS 2330.0151
SER 20.0051
VAL 30.0066
LEU 40.0040
SER 50.0074
GLN 60.0084
SER 70.0089
PRO 80.0121
ALA 90.0136
ILE 100.0116
LEU 110.0113
SER 120.0105
ALA 130.0089
SER 140.0147
PRO 150.0121
GLY 160.0121
GLU 170.0104
LYS 180.0095
VAL 190.0134
THR 200.0105
MET 210.0091
THR 220.0083
CYS 230.0070
ARG 240.0053
ALA 250.0057
ARG 260.0240
SER 270.0070
SER 290.0050
VAL 300.0043
SER 310.0060
TYR 320.0064
MET 330.0044
HIS 340.0055
TRP 350.0069
TYR 360.0069
GLN 370.0066
GLN 380.0091
LYS 390.0087
SER 400.0101
GLY 410.0239
SER 420.0191
SER 430.0121
PRO 440.0087
LYS 450.0092
PRO 460.0079
TRP 470.0023
ILE 480.0046
HIS 490.0052
ALA 500.0049
THR 510.0070
SER 520.0063
ASN 530.0093
LEU 540.0087
ALA 550.0055
SER 560.0385
GLY 570.0342
VAL 580.0120
PRO 590.0148
ALA 600.0182
ARG 610.0133
PHE 620.0097
SER 630.0106
GLY 640.0098
SER 650.0072
GLY 660.0039
SER 670.0041
GLY 680.0078
THR 690.0047
SER 700.0041
TYR 710.0050
SER 720.0068
LEU 730.0088
THR 740.0118
ILE 750.0083
SER 760.0082
ARG 770.0029
VAL 780.0044
GLU 790.0061
ALA 800.0066
GLU 810.0045
ASP 820.0008
ALA 830.0022
ALA 840.0048
THR 850.0086
TYR 860.0076
TYR 870.0085
CYS 880.0076
GLN 890.0057
GLN 900.0028
TRP 910.0038
SER 920.0107
SER 930.0111
HIS 940.0084
PRO 950.0052
PRO 960.0017
THR 970.0033
PHE 980.0079
GLY 990.0079
SER 1000.0086
GLY 1010.0117
THR 1020.0100
LYS 1030.0084
LEU 1040.0053
GLU 1050.0053
ILE 1060.0058
LYS 1070.0051
ARG 1080.0055
ALA 1090.0099
ASP 1100.0152
ALA 1110.0116
ALA 1120.0129
PRO 1130.0077
THR 1140.0040
VAL 1150.0029
SER 1160.0113
ILE 1170.0110
PHE 1180.0115
PRO 1190.0123
PRO 1200.0127
SER 1210.0117
SER 1220.0185
GLU 1230.0155
GLN 1240.0114
LEU 1250.0117
THR 1260.0144
SER 1270.0108
GLY 1280.0075
GLY 1290.0074
ALA 1300.0076
SER 1310.0066
VAL 1320.0061
VAL 1330.0070
CYS 1340.0033
PHE 1350.0026
LEU 1360.0037
ASN 1370.0025
ASN 1380.0040
PHE 1390.0090
TYR 1400.0108
PRO 1410.0136
LYS 1420.0148
ASP 1430.0201
ILE 1440.0156
ASN 1450.0139
VAL 1460.0073
LYS 1470.0060
TRP 1480.0049
LYS 1490.0060
ILE 1500.0088
ASP 1510.0090
GLY 1520.0096
SER 1530.0060
GLU 1540.0144
ARG 1550.0092
GLN 1560.0082
ASN 1570.0086
GLY 1580.0125
VAL 1590.0118
LEU 1600.0119
ASN 1610.0129
SER 1620.0127
TRP 1630.0123
THR 1640.0071
ASP 1650.0053
GLN 1660.0066
ASP 1670.0086
SER 1680.0074
LYS 1690.0064
ASP 1700.0036
SER 1710.0044
THR 1720.0053
TYR 1730.0066
SER 1740.0056
MET 1750.0070
SER 1760.0047
SER 1770.0050
THR 1780.0044
LEU 1790.0076
THR 1800.0071
LEU 1810.0072
THR 1820.0121
LYS 1830.0093
ASP 1840.0133
GLU 1850.0085
TYR 1860.0060
GLU 1870.0055
ARG 1880.0039
HIS 1890.0056
ASN 1900.0099
SER 1910.0087
TYR 1920.0075
THR 1930.0072
CYS 1940.0036
GLU 1950.0049
ALA 1960.0087
THR 1970.0112
HIS 1980.0135
LYS 1990.0137
THR 2000.0121
SER 2010.0271
THR 2020.0499
SER 2030.0085
PRO 2040.0064
ILE 2050.0127
VAL 2060.0020
LYS 2070.0063
SER 2080.0106
PHE 2090.0148
ASN 2100.0125
ARG 2110.0080
ASN 2120.0179
GLU 2130.0144
CYS 2140.0124

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.