CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J4W Structure of a Plasmodium vivax apical membrane antigen 1-Fab F8.12.19 complex  ***

<R2> analysis for 2608162333311823063

---  normal mode 61  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0749
ILE 4210.0734
PHE 4220.0399
ILE 4230.0115
SER 4240.0292
ASN 4250.0239
ASP 4260.0286
LYS 4270.0150
GLU 4280.0231
SER 4290.0263
ILE 4300.0156
LYS 4310.0209
CYS 4320.0192
PRO 4330.0148
CYS 4340.0118
GLU 4350.0116
PRO 4360.0114
GLU 4370.0060
ARG 4380.0077
ILE 4390.0214
SER 4400.0146
GLU 4410.0149
SER 4420.0749
THR 4430.0362
CYS 4440.0646
ASN 4450.0088
PHE 4460.0107
TYR 4470.0070
VAL 4480.0055
CYS 4490.0091
ASN 4500.0069
CYS 4510.0134
VAL 4520.0189
GLU 4530.0195
LYS 4540.0411
GLU 10.0638
VAL 20.0392
GLN 30.0355
LEU 40.0132
VAL 50.0145
GLU 60.0166
SER 70.0158
GLY 80.0141
GLY 90.0107
GLY 100.0082
LEU 110.0070
VAL 120.0048
LYS 130.0091
PRO 140.0159
GLY 150.0183
GLY 160.0115
SER 170.0117
LEU 180.0110
LYS 190.0114
LEU 200.0112
SER 210.0143
CYS 220.0129
ALA 230.0120
ALA 240.0106
SER 250.0151
GLY 260.0168
PHE 270.0131
ILE 280.0080
PHE 290.0073
SER 300.0084
ASP 310.0124
TYR 320.0133
TYR 330.0145
MET 340.0064
TYR 350.0034
TRP 360.0030
VAL 370.0080
ARG 380.0080
GLN 390.0068
THR 400.0058
PRO 410.0071
GLU 420.0095
LYS 430.0057
ARG 440.0049
LEU 450.0052
GLU 460.0081
TRP 470.0078
VAL 480.0093
ALA 490.0052
THR 500.0052
ILE 510.0084
SER 520.0114
ASP 520.0182
GLY 530.0243
ASN 540.0322
SER 550.0243
TYR 560.0192
THR 570.0129
TYR 580.0085
TYR 590.0097
VAL 600.0137
ASP 610.0258
SER 620.0233
VAL 630.0163
LYS 640.0182
GLY 650.0196
ARG 660.0185
PHE 670.0122
THR 680.0107
ILE 690.0113
SER 700.0125
ARG 710.0081
ASP 720.0152
ASN 730.0159
ALA 740.0281
LYS 750.0306
ASN 760.0110
ASN 770.0103
LEU 780.0063
TYR 790.0130
LEU 800.0107
GLN 810.0109
MET 820.0166
SER 820.0169
SER 820.0177
LEU 820.0137
LYS 830.0135
SER 840.0101
GLU 850.0088
ASP 860.0105
THR 870.0062
ALA 880.0062
ILE 890.0082
TYR 900.0101
TYR 910.0068
CYS 920.0066
ALA 930.0053
ARG 940.0117
ASP 950.0118
GLY 960.0119
PRO 970.0189
THR 980.0252
ASP 990.0236
SER 1000.0116
SER 1000.0101
GLY 1000.0086
TYR 1000.0054
GLY 1000.0044
GLY 1000.0048
PHE 1000.0060
GLY 1010.0088
TYR 1020.0100
TRP 1030.0047
GLY 1040.0073
GLN 1050.0086
GLY 1060.0121
THR 1070.0108
LEU 1080.0078
VAL 1090.0069
THR 1100.0032
VAL 1110.0049
SER 1120.0073
GLU 1130.0161
ALA 1140.0149
LYS 1150.0099
THR 1160.0113
THR 1170.0114
PRO 1180.0088
PRO 1190.0092
SER 1200.0117
VAL 1210.0043
TYR 1220.0027
PRO 1230.0037
LEU 1240.0075
ALA 1250.0092
PRO 1260.0102
GLY 1270.0245
SER 1280.0180
ALA 1290.0541
ALA 1300.0358
GLN 1330.0427
THR 1340.0258
ASN 1350.0098
SER 1360.0061
MET 1370.0065
VAL 1380.0128
THR 1390.0062
LEU 1400.0056
GLY 1410.0053
CYS 1420.0019
LEU 1430.0035
VAL 1440.0064
LYS 1450.0096
GLY 1460.0088
TYR 1470.0098
PHE 1480.0100
PRO 1490.0099
GLU 1500.0106
PRO 1510.0082
VAL 1520.0043
THR 1530.0068
VAL 1540.0042
THR 1560.0052
TRP 1570.0046
ASN 1620.0069
SER 1630.0047
GLY 1640.0026
SER 1650.0051
LEU 1660.0082
SER 1670.0102
SER 1680.0194
GLY 1690.0136
VAL 1710.0048
HIS 1720.0037
THR 1730.0024
PHE 1740.0092
PRO 1750.0129
ALA 1760.0127
VAL 1770.0160
LEU 1780.0107
GLN 1790.0084
SER 1800.0242
ASP 1830.0015
LEU 1840.0042
TYR 1850.0086
THR 1860.0104
LEU 1870.0081
SER 1880.0053
SER 1890.0007
SER 1900.0025
VAL 1910.0049
THR 1920.0118
VAL 1930.0137
PRO 1940.0155
SER 1950.0175
SER 1960.0259
PRO 1980.0159
ARG 1990.0110
PRO 2000.0143
SER 2020.0222
GLU 2030.0192
THR 2040.0172
VAL 2050.0082
THR 2060.0073
CYS 2080.0051
ASN 2090.0069
VAL 2100.0066
ALA 2110.0126
HIS 2120.0080
PRO 2130.0106
ALA 2140.0111
SER 2150.0087
SER 2160.0134
THR 2170.0184
LYS 2180.0227
VAL 2190.0182
ASP 2200.0058
LYS 2210.0048
LYS 2220.0077
ILE 2230.0091
VAL 2260.0129
PRO 2270.0129
ARG 2280.0131
ASP 2320.0170
CYS 2330.0169
SER 20.0043
VAL 30.0016
LEU 40.0029
SER 50.0038
GLN 60.0024
SER 70.0021
PRO 80.0057
ALA 90.0075
ILE 100.0091
LEU 110.0094
SER 120.0112
ALA 130.0109
SER 140.0121
PRO 150.0140
GLY 160.0121
GLU 170.0091
LYS 180.0073
VAL 190.0023
THR 200.0040
MET 210.0030
THR 220.0044
CYS 230.0051
ARG 240.0092
ALA 250.0105
ARG 260.0191
SER 270.0135
SER 290.0183
VAL 300.0135
SER 310.0129
TYR 320.0046
MET 330.0036
HIS 340.0038
TRP 350.0035
TYR 360.0036
GLN 370.0036
GLN 380.0045
LYS 390.0057
SER 400.0058
GLY 410.0242
SER 420.0168
SER 430.0071
PRO 440.0039
LYS 450.0055
PRO 460.0067
TRP 470.0059
ILE 480.0069
HIS 490.0069
ALA 500.0062
THR 510.0041
SER 520.0055
ASN 530.0089
LEU 540.0084
ALA 550.0073
SER 560.0158
GLY 570.0129
VAL 580.0090
PRO 590.0073
ALA 600.0076
ARG 610.0076
PHE 620.0042
SER 630.0038
GLY 640.0030
SER 650.0010
GLY 660.0091
SER 670.0168
GLY 680.0195
THR 690.0166
SER 700.0146
TYR 710.0065
SER 720.0042
LEU 730.0026
THR 740.0063
ILE 750.0062
SER 760.0112
ARG 770.0128
VAL 780.0082
GLU 790.0160
ALA 800.0098
GLU 810.0104
ASP 820.0085
ALA 830.0078
ALA 840.0061
THR 850.0057
TYR 860.0032
TYR 870.0038
CYS 880.0042
GLN 890.0027
GLN 900.0039
TRP 910.0055
SER 920.0105
SER 930.0107
HIS 940.0092
PRO 950.0044
PRO 960.0042
THR 970.0046
PHE 980.0030
GLY 990.0027
SER 1000.0028
GLY 1010.0041
THR 1020.0046
LYS 1030.0062
LEU 1040.0096
GLU 1050.0102
ILE 1060.0105
LYS 1070.0095
ARG 1080.0051
ALA 1090.0084
ASP 1100.0145
ALA 1110.0100
ALA 1120.0089
PRO 1130.0030
THR 1140.0052
VAL 1150.0072
SER 1160.0094
ILE 1170.0119
PHE 1180.0140
PRO 1190.0107
PRO 1200.0093
SER 1210.0091
SER 1220.0061
GLU 1230.0035
GLN 1240.0045
LEU 1250.0045
THR 1260.0133
SER 1270.0167
GLY 1280.0155
GLY 1290.0111
ALA 1300.0087
SER 1310.0134
VAL 1320.0132
VAL 1330.0136
CYS 1340.0076
PHE 1350.0057
LEU 1360.0046
ASN 1370.0046
ASN 1380.0048
PHE 1390.0051
TYR 1400.0074
PRO 1410.0083
LYS 1420.0083
ASP 1430.0125
ILE 1440.0115
ASN 1450.0228
VAL 1460.0124
LYS 1470.0098
TRP 1480.0051
LYS 1490.0088
ILE 1500.0123
ASP 1510.0128
GLY 1520.0189
SER 1530.0124
GLU 1540.0155
ARG 1550.0117
GLN 1560.0145
ASN 1570.0168
GLY 1580.0154
VAL 1590.0156
LEU 1600.0165
ASN 1610.0146
SER 1620.0140
TRP 1630.0113
THR 1640.0066
ASP 1650.0037
GLN 1660.0037
ASP 1670.0030
SER 1680.0048
LYS 1690.0124
ASP 1700.0083
SER 1710.0055
THR 1720.0038
TYR 1730.0044
SER 1740.0059
MET 1750.0072
SER 1760.0101
SER 1770.0110
THR 1780.0142
LEU 1790.0181
THR 1800.0155
LEU 1810.0127
THR 1820.0186
LYS 1830.0097
ASP 1840.0165
GLU 1850.0086
TYR 1860.0038
GLU 1870.0053
ARG 1880.0023
HIS 1890.0062
ASN 1900.0129
SER 1910.0111
TYR 1920.0099
THR 1930.0081
CYS 1940.0032
GLU 1950.0153
ALA 1960.0187
THR 1970.0256
HIS 1980.0105
LYS 1990.0140
THR 2000.0229
SER 2010.0220
THR 2020.0378
SER 2030.0505
PRO 2040.0417
ILE 2050.0295
VAL 2060.0219
LYS 2070.0159
SER 2080.0154
PHE 2090.0192
ASN 2100.0159
ARG 2110.0095
ASN 2120.0217
GLU 2130.0239
CYS 2140.0215

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.