CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J4W Structure of a Plasmodium vivax apical membrane antigen 1-Fab F8.12.19 complex  ***

<R2> analysis for 2608162333311823063

---  normal mode 77  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0624
ILE 4210.0176
PHE 4220.0192
ILE 4230.0175
SER 4240.0163
ASN 4250.0219
ASP 4260.0220
LYS 4270.0043
GLU 4280.0034
SER 4290.0028
ILE 4300.0068
LYS 4310.0081
CYS 4320.0089
PRO 4330.0074
CYS 4340.0071
GLU 4350.0068
PRO 4360.0128
GLU 4370.0190
ARG 4380.0185
ILE 4390.0154
SER 4400.0116
GLU 4410.0043
SER 4420.0129
THR 4430.0272
CYS 4440.0229
ASN 4450.0188
PHE 4460.0092
TYR 4470.0083
VAL 4480.0082
CYS 4490.0105
ASN 4500.0146
CYS 4510.0138
VAL 4520.0147
GLU 4530.0135
LYS 4540.0158
GLU 10.0384
VAL 20.0127
GLN 30.0292
LEU 40.0066
VAL 50.0060
GLU 60.0101
SER 70.0168
GLY 80.0156
GLY 90.0135
GLY 100.0104
LEU 110.0088
VAL 120.0080
LYS 130.0134
PRO 140.0115
GLY 150.0098
GLY 160.0036
SER 170.0044
LEU 180.0071
LYS 190.0102
LEU 200.0091
SER 210.0115
CYS 220.0050
ALA 230.0023
ALA 240.0079
SER 250.0137
GLY 260.0084
PHE 270.0043
ILE 280.0105
PHE 290.0082
SER 300.0090
ASP 310.0081
TYR 320.0063
TYR 330.0032
MET 340.0045
TYR 350.0054
TRP 360.0068
VAL 370.0048
ARG 380.0032
GLN 390.0029
THR 400.0094
PRO 410.0169
GLU 420.0164
LYS 430.0150
ARG 440.0107
LEU 450.0061
GLU 460.0083
TRP 470.0094
VAL 480.0099
ALA 490.0083
THR 500.0053
ILE 510.0033
SER 520.0035
ASP 520.0062
GLY 530.0092
ASN 540.0095
SER 550.0067
TYR 560.0046
THR 570.0035
TYR 580.0053
TYR 590.0125
VAL 600.0191
ASP 610.0428
SER 620.0275
VAL 630.0128
LYS 640.0259
GLY 650.0327
ARG 660.0229
PHE 670.0062
THR 680.0072
ILE 690.0074
SER 700.0077
ARG 710.0057
ASP 720.0071
ASN 730.0113
ALA 740.0165
LYS 750.0089
ASN 760.0065
ASN 770.0030
LEU 780.0041
TYR 790.0091
LEU 800.0062
GLN 810.0059
MET 820.0089
SER 820.0152
SER 820.0215
LEU 820.0175
LYS 830.0243
SER 840.0277
GLU 850.0246
ASP 860.0149
THR 870.0168
ALA 880.0077
ILE 890.0065
TYR 900.0028
TYR 910.0039
CYS 920.0051
ALA 930.0057
ARG 940.0111
ASP 950.0105
GLY 960.0152
PRO 970.0320
THR 980.0418
ASP 990.0377
SER 1000.0147
SER 1000.0130
GLY 1000.0118
TYR 1000.0094
GLY 1000.0043
GLY 1000.0037
PHE 1000.0063
GLY 1010.0101
TYR 1020.0140
TRP 1030.0047
GLY 1040.0046
GLN 1050.0057
GLY 1060.0115
THR 1070.0109
LEU 1080.0106
VAL 1090.0098
THR 1100.0123
VAL 1110.0105
SER 1120.0111
GLU 1130.0159
ALA 1140.0078
LYS 1150.0147
THR 1160.0166
THR 1170.0152
PRO 1180.0187
PRO 1190.0168
SER 1200.0200
VAL 1210.0124
TYR 1220.0098
PRO 1230.0097
LEU 1240.0055
ALA 1250.0040
PRO 1260.0066
GLY 1270.0273
SER 1280.0372
ALA 1290.0400
ALA 1300.0380
GLN 1330.0624
THR 1340.0187
ASN 1350.0246
SER 1360.0265
MET 1370.0287
VAL 1380.0242
THR 1390.0092
LEU 1400.0081
GLY 1410.0078
CYS 1420.0090
LEU 1430.0087
VAL 1440.0098
LYS 1450.0120
GLY 1460.0108
TYR 1470.0115
PHE 1480.0106
PRO 1490.0097
GLU 1500.0072
PRO 1510.0047
VAL 1520.0103
THR 1530.0167
VAL 1540.0167
THR 1560.0118
TRP 1570.0055
ASN 1620.0084
SER 1630.0234
GLY 1640.0328
SER 1650.0233
LEU 1660.0137
SER 1670.0331
SER 1680.0366
GLY 1690.0238
VAL 1710.0117
HIS 1720.0084
THR 1730.0109
PHE 1740.0079
PRO 1750.0079
ALA 1760.0070
VAL 1770.0046
LEU 1780.0055
GLN 1790.0064
SER 1800.0150
ASP 1830.0099
LEU 1840.0087
TYR 1850.0064
THR 1860.0049
LEU 1870.0057
SER 1880.0069
SER 1890.0084
SER 1900.0073
VAL 1910.0074
THR 1920.0143
VAL 1930.0163
PRO 1940.0279
SER 1950.0357
SER 1960.0399
PRO 1980.0193
ARG 1990.0237
PRO 2000.0314
SER 2020.0304
GLU 2030.0248
THR 2040.0263
VAL 2050.0081
THR 2060.0079
CYS 2080.0126
ASN 2090.0138
VAL 2100.0178
ALA 2110.0236
HIS 2120.0186
PRO 2130.0250
ALA 2140.0307
SER 2150.0346
SER 2160.0432
THR 2170.0242
LYS 2180.0248
VAL 2190.0281
ASP 2200.0114
LYS 2210.0062
LYS 2220.0012
ILE 2230.0128
VAL 2260.0311
PRO 2270.0252
ARG 2280.0123
ASP 2320.0322
CYS 2330.0344
SER 20.0134
VAL 30.0140
LEU 40.0145
SER 50.0172
GLN 60.0147
SER 70.0150
PRO 80.0133
ALA 90.0142
ILE 100.0108
LEU 110.0070
SER 120.0061
ALA 130.0061
SER 140.0100
PRO 150.0116
GLY 160.0110
GLU 170.0063
LYS 180.0048
VAL 190.0060
THR 200.0055
MET 210.0069
THR 220.0088
CYS 230.0147
ARG 240.0172
ALA 250.0202
ARG 260.0264
SER 270.0229
SER 290.0216
VAL 300.0158
SER 310.0120
TYR 320.0032
MET 330.0044
HIS 340.0030
TRP 350.0028
TYR 360.0042
GLN 370.0042
GLN 380.0052
LYS 390.0073
SER 400.0188
GLY 410.0609
SER 420.0351
SER 430.0076
PRO 440.0021
LYS 450.0037
PRO 460.0054
TRP 470.0032
ILE 480.0052
HIS 490.0064
ALA 500.0042
THR 510.0050
SER 520.0082
ASN 530.0110
LEU 540.0067
ALA 550.0053
SER 560.0301
GLY 570.0186
VAL 580.0041
PRO 590.0050
ALA 600.0039
ARG 610.0072
PHE 620.0064
SER 630.0070
GLY 640.0078
SER 650.0070
GLY 660.0051
SER 670.0122
GLY 680.0181
THR 690.0194
SER 700.0164
TYR 710.0077
SER 720.0056
LEU 730.0025
THR 740.0069
ILE 750.0062
SER 760.0050
ARG 770.0104
VAL 780.0113
GLU 790.0132
ALA 800.0080
GLU 810.0104
ASP 820.0104
ALA 830.0074
ALA 840.0076
THR 850.0073
TYR 860.0047
TYR 870.0066
CYS 880.0081
GLN 890.0062
GLN 900.0060
TRP 910.0058
SER 920.0090
SER 930.0084
HIS 940.0080
PRO 950.0077
PRO 960.0055
THR 970.0066
PHE 980.0070
GLY 990.0079
SER 1000.0093
GLY 1010.0099
THR 1020.0082
LYS 1030.0076
LEU 1040.0087
GLU 1050.0066
ILE 1060.0062
LYS 1070.0070
ARG 1080.0064
ALA 1090.0069
ASP 1100.0083
ALA 1110.0088
ALA 1120.0086
PRO 1130.0104
THR 1140.0097
VAL 1150.0098
SER 1160.0069
ILE 1170.0088
PHE 1180.0101
PRO 1190.0142
PRO 1200.0149
SER 1210.0115
SER 1220.0120
GLU 1230.0052
GLN 1240.0056
LEU 1250.0122
THR 1260.0131
SER 1270.0074
GLY 1280.0083
GLY 1290.0104
ALA 1300.0149
SER 1310.0147
VAL 1320.0131
VAL 1330.0124
CYS 1340.0059
PHE 1350.0040
LEU 1360.0062
ASN 1370.0101
ASN 1380.0092
PHE 1390.0091
TYR 1400.0040
PRO 1410.0041
LYS 1420.0097
ASP 1430.0082
ILE 1440.0069
ASN 1450.0087
VAL 1460.0175
LYS 1470.0144
TRP 1480.0096
LYS 1490.0039
ILE 1500.0124
ASP 1510.0174
GLY 1520.0341
SER 1530.0173
GLU 1540.0350
ARG 1550.0334
GLN 1560.0385
ASN 1570.0518
GLY 1580.0095
VAL 1590.0174
LEU 1600.0245
ASN 1610.0123
SER 1620.0053
TRP 1630.0115
THR 1640.0136
ASP 1650.0134
GLN 1660.0081
ASP 1670.0068
SER 1680.0069
LYS 1690.0167
ASP 1700.0104
SER 1710.0068
THR 1720.0103
TYR 1730.0089
SER 1740.0080
MET 1750.0078
SER 1760.0063
SER 1770.0096
THR 1780.0144
LEU 1790.0118
THR 1800.0128
LEU 1810.0108
THR 1820.0126
LYS 1830.0150
ASP 1840.0150
GLU 1850.0097
TYR 1860.0128
GLU 1870.0143
ARG 1880.0120
HIS 1890.0113
ASN 1900.0109
SER 1910.0129
TYR 1920.0103
THR 1930.0097
CYS 1940.0036
GLU 1950.0019
ALA 1960.0039
THR 1970.0098
HIS 1980.0063
LYS 1990.0050
THR 2000.0122
SER 2010.0094
THR 2020.0228
SER 2030.0298
PRO 2040.0178
ILE 2050.0120
VAL 2060.0089
LYS 2070.0107
SER 2080.0125
PHE 2090.0088
ASN 2100.0088
ARG 2110.0086
ASN 2120.0375
GLU 2130.0337
CYS 2140.0441

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.