CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J4W Structure of a Plasmodium vivax apical membrane antigen 1-Fab F8.12.19 complex  ***

<R2> analysis for 2608162333311823063

---  normal mode 82  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0997
ILE 4210.0135
PHE 4220.0129
ILE 4230.0073
SER 4240.0071
ASN 4250.0122
ASP 4260.0145
LYS 4270.0025
GLU 4280.0067
SER 4290.0127
ILE 4300.0091
LYS 4310.0147
CYS 4320.0102
PRO 4330.0046
CYS 4340.0037
GLU 4350.0027
PRO 4360.0086
GLU 4370.0122
ARG 4380.0130
ILE 4390.0177
SER 4400.0140
GLU 4410.0070
SER 4420.0220
THR 4430.0234
CYS 4440.0275
ASN 4450.0195
PHE 4460.0137
TYR 4470.0121
VAL 4480.0047
CYS 4490.0023
ASN 4500.0034
CYS 4510.0126
VAL 4520.0247
GLU 4530.0312
LYS 4540.0997
GLU 10.0463
VAL 20.0149
GLN 30.0461
LEU 40.0178
VAL 50.0123
GLU 60.0057
SER 70.0072
GLY 80.0133
GLY 90.0162
GLY 100.0188
LEU 110.0134
VAL 120.0104
LYS 130.0063
PRO 140.0055
GLY 150.0126
GLY 160.0098
SER 170.0064
LEU 180.0039
LYS 190.0082
LEU 200.0074
SER 210.0068
CYS 220.0103
ALA 230.0165
ALA 240.0247
SER 250.0289
GLY 260.0240
PHE 270.0259
ILE 280.0256
PHE 290.0210
SER 300.0213
ASP 310.0156
TYR 320.0128
TYR 330.0094
MET 340.0076
TYR 350.0073
TRP 360.0089
VAL 370.0126
ARG 380.0091
GLN 390.0150
THR 400.0227
PRO 410.0353
GLU 420.0591
LYS 430.0308
ARG 440.0226
LEU 450.0185
GLU 460.0062
TRP 470.0067
VAL 480.0052
ALA 490.0063
THR 500.0025
ILE 510.0019
SER 520.0106
ASP 520.0067
GLY 530.0099
ASN 540.0165
SER 550.0159
TYR 560.0133
THR 570.0063
TYR 580.0103
TYR 590.0096
VAL 600.0114
ASP 610.0431
SER 620.0362
VAL 630.0142
LYS 640.0229
GLY 650.0159
ARG 660.0093
PHE 670.0086
THR 680.0093
ILE 690.0088
SER 700.0127
ARG 710.0109
ASP 720.0143
ASN 730.0163
ALA 740.0254
LYS 750.0211
ASN 760.0155
ASN 770.0128
LEU 780.0117
TYR 790.0120
LEU 800.0109
GLN 810.0102
MET 820.0066
SER 820.0102
SER 820.0159
LEU 820.0091
LYS 830.0131
SER 840.0115
GLU 850.0182
ASP 860.0126
THR 870.0229
ALA 880.0194
ILE 890.0149
TYR 900.0102
TYR 910.0064
CYS 920.0088
ALA 930.0126
ARG 940.0092
ASP 950.0096
GLY 960.0090
PRO 970.0149
THR 980.0181
ASP 990.0167
SER 1000.0072
SER 1000.0077
GLY 1000.0090
TYR 1000.0080
GLY 1000.0079
GLY 1000.0060
PHE 1000.0055
GLY 1010.0052
TYR 1020.0052
TRP 1030.0065
GLY 1040.0050
GLN 1050.0071
GLY 1060.0081
THR 1070.0123
LEU 1080.0161
VAL 1090.0190
THR 1100.0172
VAL 1110.0113
SER 1120.0101
GLU 1130.0114
ALA 1140.0091
LYS 1150.0085
THR 1160.0067
THR 1170.0046
PRO 1180.0066
PRO 1190.0032
SER 1200.0054
VAL 1210.0038
TYR 1220.0012
PRO 1230.0022
LEU 1240.0064
ALA 1250.0127
PRO 1260.0175
GLY 1270.0211
SER 1280.0184
ALA 1290.0495
ALA 1300.0227
GLN 1330.0180
THR 1340.0171
ASN 1350.0268
SER 1360.0147
MET 1370.0098
VAL 1380.0099
THR 1390.0056
LEU 1400.0054
GLY 1410.0054
CYS 1420.0061
LEU 1430.0047
VAL 1440.0046
LYS 1450.0024
GLY 1460.0028
TYR 1470.0041
PHE 1480.0079
PRO 1490.0073
GLU 1500.0081
PRO 1510.0177
VAL 1520.0084
THR 1530.0107
VAL 1540.0147
THR 1560.0141
TRP 1570.0092
ASN 1620.0137
SER 1630.0179
GLY 1640.0125
SER 1650.0226
LEU 1660.0134
SER 1670.0153
SER 1680.0214
GLY 1690.0127
VAL 1710.0010
HIS 1720.0031
THR 1730.0051
PHE 1740.0028
PRO 1750.0027
ALA 1760.0026
VAL 1770.0014
LEU 1780.0046
GLN 1790.0107
SER 1800.0155
ASP 1830.0076
LEU 1840.0073
TYR 1850.0065
THR 1860.0011
LEU 1870.0027
SER 1880.0044
SER 1890.0067
SER 1900.0054
VAL 1910.0042
THR 1920.0033
VAL 1930.0032
PRO 1940.0048
SER 1950.0073
SER 1960.0090
PRO 1980.0186
ARG 1990.0142
PRO 2000.0101
SER 2020.0107
GLU 2030.0198
THR 2040.0128
VAL 2050.0103
THR 2060.0110
CYS 2080.0148
ASN 2090.0171
VAL 2100.0180
ALA 2110.0104
HIS 2120.0036
PRO 2130.0211
ALA 2140.0318
SER 2150.0264
SER 2160.0338
THR 2170.0114
LYS 2180.0220
VAL 2190.0226
ASP 2200.0135
LYS 2210.0049
LYS 2220.0033
ILE 2230.0063
VAL 2260.0221
PRO 2270.0299
ARG 2280.0294
ASP 2320.0562
CYS 2330.0247
SER 20.0336
VAL 30.0360
LEU 40.0313
SER 50.0224
GLN 60.0181
SER 70.0223
PRO 80.0110
ALA 90.0088
ILE 100.0069
LEU 110.0090
SER 120.0109
ALA 130.0130
SER 140.0164
PRO 150.0164
GLY 160.0137
GLU 170.0122
LYS 180.0149
VAL 190.0132
THR 200.0097
MET 210.0068
THR 220.0125
CYS 230.0254
ARG 240.0265
ALA 250.0184
ARG 260.0391
SER 270.0287
SER 290.0114
VAL 300.0097
SER 310.0051
TYR 320.0066
MET 330.0073
HIS 340.0048
TRP 350.0040
TYR 360.0052
GLN 370.0056
GLN 380.0135
LYS 390.0108
SER 400.0128
GLY 410.0282
SER 420.0134
SER 430.0093
PRO 440.0085
LYS 450.0067
PRO 460.0083
TRP 470.0032
ILE 480.0029
HIS 490.0039
ALA 500.0022
THR 510.0075
SER 520.0102
ASN 530.0095
LEU 540.0090
ALA 550.0095
SER 560.0217
GLY 570.0164
VAL 580.0151
PRO 590.0222
ALA 600.0212
ARG 610.0169
PHE 620.0079
SER 630.0092
GLY 640.0130
SER 650.0194
GLY 660.0240
SER 670.0253
GLY 680.0124
THR 690.0178
SER 700.0273
TYR 710.0190
SER 720.0146
LEU 730.0080
THR 740.0090
ILE 750.0091
SER 760.0124
ARG 770.0195
VAL 780.0135
GLU 790.0171
ALA 800.0116
GLU 810.0121
ASP 820.0092
ALA 830.0074
ALA 840.0102
THR 850.0140
TYR 860.0089
TYR 870.0084
CYS 880.0077
GLN 890.0052
GLN 900.0068
TRP 910.0071
SER 920.0077
SER 930.0121
HIS 940.0114
PRO 950.0133
PRO 960.0104
THR 970.0093
PHE 980.0120
GLY 990.0129
SER 1000.0123
GLY 1010.0097
THR 1020.0079
LYS 1030.0120
LEU 1040.0106
GLU 1050.0088
ILE 1060.0095
LYS 1070.0079
ARG 1080.0056
ALA 1090.0046
ASP 1100.0062
ALA 1110.0062
ALA 1120.0088
PRO 1130.0086
THR 1140.0081
VAL 1150.0073
SER 1160.0050
ILE 1170.0043
PHE 1180.0051
PRO 1190.0060
PRO 1200.0060
SER 1210.0064
SER 1220.0139
GLU 1230.0096
GLN 1240.0074
LEU 1250.0060
THR 1260.0056
SER 1270.0079
GLY 1280.0091
GLY 1290.0090
ALA 1300.0066
SER 1310.0015
VAL 1320.0013
VAL 1330.0028
CYS 1340.0035
PHE 1350.0037
LEU 1360.0035
ASN 1370.0054
ASN 1380.0062
PHE 1390.0058
TYR 1400.0053
PRO 1410.0068
LYS 1420.0099
ASP 1430.0136
ILE 1440.0081
ASN 1450.0054
VAL 1460.0099
LYS 1470.0096
TRP 1480.0089
LYS 1490.0115
ILE 1500.0100
ASP 1510.0109
GLY 1520.0132
SER 1530.0201
GLU 1540.0172
ARG 1550.0151
GLN 1560.0143
ASN 1570.0178
GLY 1580.0061
VAL 1590.0084
LEU 1600.0098
ASN 1610.0033
SER 1620.0018
TRP 1630.0007
THR 1640.0043
ASP 1650.0053
GLN 1660.0049
ASP 1670.0047
SER 1680.0038
LYS 1690.0108
ASP 1700.0061
SER 1710.0063
THR 1720.0051
TYR 1730.0046
SER 1740.0030
MET 1750.0015
SER 1760.0048
SER 1770.0052
THR 1780.0059
LEU 1790.0057
THR 1800.0058
LEU 1810.0054
THR 1820.0132
LYS 1830.0099
ASP 1840.0124
GLU 1850.0101
TYR 1860.0083
GLU 1870.0081
ARG 1880.0122
HIS 1890.0094
ASN 1900.0072
SER 1910.0060
TYR 1920.0076
THR 1930.0090
CYS 1940.0058
GLU 1950.0032
ALA 1960.0032
THR 1970.0095
HIS 1980.0101
LYS 1990.0109
THR 2000.0123
SER 2010.0091
THR 2020.0170
SER 2030.0195
PRO 2040.0127
ILE 2050.0125
VAL 2060.0043
LYS 2070.0026
SER 2080.0019
PHE 2090.0079
ASN 2100.0081
ARG 2110.0068
ASN 2120.0144
GLU 2130.0118
CYS 2140.0102

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.