CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J4W Structure of a Plasmodium vivax apical membrane antigen 1-Fab F8.12.19 complex  ***

<R2> analysis for 2608162333311823063

---  normal mode 83  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0940
ILE 4210.0169
PHE 4220.0068
ILE 4230.0206
SER 4240.0210
ASN 4250.0167
ASP 4260.0171
LYS 4270.0079
GLU 4280.0163
SER 4290.0140
ILE 4300.0098
LYS 4310.0049
CYS 4320.0112
PRO 4330.0172
CYS 4340.0115
GLU 4350.0086
PRO 4360.0070
GLU 4370.0045
ARG 4380.0087
ILE 4390.0228
SER 4400.0195
GLU 4410.0208
SER 4420.0276
THR 4430.0211
CYS 4440.0211
ASN 4450.0133
PHE 4460.0146
TYR 4470.0138
VAL 4480.0052
CYS 4490.0087
ASN 4500.0103
CYS 4510.0202
VAL 4520.0334
GLU 4530.0318
LYS 4540.0940
GLU 10.0169
VAL 20.0210
GLN 30.0219
LEU 40.0153
VAL 50.0132
GLU 60.0120
SER 70.0149
GLY 80.0102
GLY 90.0083
GLY 100.0163
LEU 110.0183
VAL 120.0225
LYS 130.0390
PRO 140.0125
GLY 150.0076
GLY 160.0145
SER 170.0132
LEU 180.0131
LYS 190.0107
LEU 200.0115
SER 210.0147
CYS 220.0119
ALA 230.0092
ALA 240.0110
SER 250.0113
GLY 260.0119
PHE 270.0159
ILE 280.0198
PHE 290.0180
SER 300.0193
ASP 310.0130
TYR 320.0128
TYR 330.0148
MET 340.0102
TYR 350.0115
TRP 360.0124
VAL 370.0101
ARG 380.0078
GLN 390.0083
THR 400.0124
PRO 410.0107
GLU 420.0189
LYS 430.0129
ARG 440.0164
LEU 450.0166
GLU 460.0049
TRP 470.0062
VAL 480.0109
ALA 490.0199
THR 500.0201
ILE 510.0201
SER 520.0281
ASP 520.0255
GLY 530.0348
ASN 540.0419
SER 550.0337
TYR 560.0324
THR 570.0323
TYR 580.0174
TYR 590.0188
VAL 600.0202
ASP 610.0310
SER 620.0291
VAL 630.0236
LYS 640.0231
GLY 650.0230
ARG 660.0215
PHE 670.0154
THR 680.0131
ILE 690.0135
SER 700.0123
ARG 710.0083
ASP 720.0034
ASN 730.0183
ALA 740.0281
LYS 750.0164
ASN 760.0064
ASN 770.0049
LEU 780.0101
TYR 790.0106
LEU 800.0112
GLN 810.0127
MET 820.0168
SER 820.0144
SER 820.0127
LEU 820.0129
LYS 830.0146
SER 840.0182
GLU 850.0222
ASP 860.0153
THR 870.0155
ALA 880.0088
ILE 890.0081
TYR 900.0102
TYR 910.0111
CYS 920.0118
ALA 930.0126
ARG 940.0111
ASP 950.0027
GLY 960.0095
PRO 970.0441
THR 980.0566
ASP 990.0567
SER 1000.0166
SER 1000.0118
GLY 1000.0129
TYR 1000.0133
GLY 1000.0097
GLY 1000.0025
PHE 1000.0061
GLY 1010.0093
TYR 1020.0156
TRP 1030.0154
GLY 1040.0142
GLN 1050.0110
GLY 1060.0143
THR 1070.0099
LEU 1080.0073
VAL 1090.0123
THR 1100.0151
VAL 1110.0167
SER 1120.0189
GLU 1130.0315
ALA 1140.0200
LYS 1150.0342
THR 1160.0176
THR 1170.0168
PRO 1180.0096
PRO 1190.0108
SER 1200.0145
VAL 1210.0110
TYR 1220.0086
PRO 1230.0086
LEU 1240.0093
ALA 1250.0136
PRO 1260.0146
GLY 1270.0168
SER 1280.0160
ALA 1290.0233
ALA 1300.0175
GLN 1330.0108
THR 1340.0062
ASN 1350.0037
SER 1360.0036
MET 1370.0071
VAL 1380.0079
THR 1390.0058
LEU 1400.0061
GLY 1410.0048
CYS 1420.0090
LEU 1430.0091
VAL 1440.0109
LYS 1450.0114
GLY 1460.0093
TYR 1470.0085
PHE 1480.0055
PRO 1490.0061
GLU 1500.0083
PRO 1510.0045
VAL 1520.0022
THR 1530.0044
VAL 1540.0049
THR 1560.0069
TRP 1570.0018
ASN 1620.0127
SER 1630.0150
GLY 1640.0123
SER 1650.0219
LEU 1660.0134
SER 1670.0071
SER 1680.0099
GLY 1690.0093
VAL 1710.0060
HIS 1720.0060
THR 1730.0067
PHE 1740.0105
PRO 1750.0124
ALA 1760.0144
VAL 1770.0251
LEU 1780.0196
GLN 1790.0265
SER 1800.0098
ASP 1830.0091
LEU 1840.0067
TYR 1850.0128
THR 1860.0161
LEU 1870.0130
SER 1880.0111
SER 1890.0060
SER 1900.0056
VAL 1910.0053
THR 1920.0084
VAL 1930.0079
PRO 1940.0074
SER 1950.0086
SER 1960.0266
PRO 1980.0196
ARG 1990.0098
PRO 2000.0080
SER 2020.0134
GLU 2030.0171
THR 2040.0194
VAL 2050.0053
THR 2060.0030
CYS 2080.0028
ASN 2090.0078
VAL 2100.0090
ALA 2110.0146
HIS 2120.0076
PRO 2130.0151
ALA 2140.0259
SER 2150.0223
SER 2160.0185
THR 2170.0162
LYS 2180.0367
VAL 2190.0342
ASP 2200.0096
LYS 2210.0026
LYS 2220.0058
ILE 2230.0095
VAL 2260.0175
PRO 2270.0177
ARG 2280.0168
ASP 2320.0123
CYS 2330.0234
SER 20.0151
VAL 30.0167
LEU 40.0173
SER 50.0128
GLN 60.0105
SER 70.0114
PRO 80.0153
ALA 90.0153
ILE 100.0139
LEU 110.0185
SER 120.0183
ALA 130.0183
SER 140.0140
PRO 150.0088
GLY 160.0040
GLU 170.0071
LYS 180.0078
VAL 190.0118
THR 200.0130
MET 210.0090
THR 220.0076
CYS 230.0110
ARG 240.0115
ALA 250.0144
ARG 260.0192
SER 270.0146
SER 290.0090
VAL 300.0083
SER 310.0084
TYR 320.0053
MET 330.0042
HIS 340.0055
TRP 350.0050
TYR 360.0053
GLN 370.0047
GLN 380.0062
LYS 390.0125
SER 400.0242
GLY 410.0625
SER 420.0331
SER 430.0057
PRO 440.0062
LYS 450.0042
PRO 460.0032
TRP 470.0106
ILE 480.0105
HIS 490.0117
ALA 500.0112
THR 510.0090
SER 520.0106
ASN 530.0169
LEU 540.0170
ALA 550.0228
SER 560.0554
GLY 570.0456
VAL 580.0241
PRO 590.0164
ALA 600.0136
ARG 610.0110
PHE 620.0032
SER 630.0022
GLY 640.0050
SER 650.0097
GLY 660.0089
SER 670.0119
GLY 680.0140
THR 690.0126
SER 700.0115
TYR 710.0058
SER 720.0042
LEU 730.0051
THR 740.0080
ILE 750.0063
SER 760.0046
ARG 770.0072
VAL 780.0087
GLU 790.0073
ALA 800.0096
GLU 810.0117
ASP 820.0115
ALA 830.0127
ALA 840.0086
THR 850.0050
TYR 860.0064
TYR 870.0091
CYS 880.0103
GLN 890.0078
GLN 900.0072
TRP 910.0083
SER 920.0114
SER 930.0130
HIS 940.0077
PRO 950.0045
PRO 960.0068
THR 970.0067
PHE 980.0146
GLY 990.0164
SER 1000.0154
GLY 1010.0131
THR 1020.0082
LYS 1030.0084
LEU 1040.0140
GLU 1050.0142
ILE 1060.0151
LYS 1070.0151
ARG 1080.0121
ALA 1090.0126
ASP 1100.0059
ALA 1110.0038
ALA 1120.0071
PRO 1130.0076
THR 1140.0073
VAL 1150.0081
SER 1160.0046
ILE 1170.0074
PHE 1180.0066
PRO 1190.0103
PRO 1200.0087
SER 1210.0074
SER 1220.0130
GLU 1230.0119
GLN 1240.0084
LEU 1250.0108
THR 1260.0108
SER 1270.0120
GLY 1280.0082
GLY 1290.0079
ALA 1300.0101
SER 1310.0099
VAL 1320.0105
VAL 1330.0078
CYS 1340.0058
PHE 1350.0036
LEU 1360.0039
ASN 1370.0054
ASN 1380.0042
PHE 1390.0047
TYR 1400.0046
PRO 1410.0068
LYS 1420.0067
ASP 1430.0111
ILE 1440.0070
ASN 1450.0038
VAL 1460.0052
LYS 1470.0073
TRP 1480.0099
LYS 1490.0099
ILE 1500.0071
ASP 1510.0081
GLY 1520.0092
SER 1530.0125
GLU 1540.0100
ARG 1550.0126
GLN 1560.0164
ASN 1570.0201
GLY 1580.0157
VAL 1590.0138
LEU 1600.0060
ASN 1610.0033
SER 1620.0080
TRP 1630.0096
THR 1640.0037
ASP 1650.0079
GLN 1660.0070
ASP 1670.0100
SER 1680.0119
LYS 1690.0061
ASP 1700.0033
SER 1710.0065
THR 1720.0038
TYR 1730.0028
SER 1740.0036
MET 1750.0051
SER 1760.0045
SER 1770.0048
THR 1780.0080
LEU 1790.0145
THR 1800.0123
LEU 1810.0116
THR 1820.0064
LYS 1830.0053
ASP 1840.0080
GLU 1850.0065
TYR 1860.0032
GLU 1870.0117
ARG 1880.0170
HIS 1890.0118
ASN 1900.0148
SER 1910.0077
TYR 1920.0073
THR 1930.0083
CYS 1940.0064
GLU 1950.0034
ALA 1960.0043
THR 1970.0093
HIS 1980.0071
LYS 1990.0100
THR 2000.0132
SER 2010.0094
THR 2020.0186
SER 2030.0406
PRO 2040.0248
ILE 2050.0212
VAL 2060.0084
LYS 2070.0069
SER 2080.0053
PHE 2090.0065
ASN 2100.0120
ARG 2110.0164
ASN 2120.0241
GLU 2130.0165
CYS 2140.0212

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.