CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J4W Structure of a Plasmodium vivax apical membrane antigen 1-Fab F8.12.19 complex  ***

<R2> analysis for 2608162333311823063

---  normal mode 84  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0871
ILE 4210.0133
PHE 4220.0085
ILE 4230.0096
SER 4240.0081
ASN 4250.0091
ASP 4260.0119
LYS 4270.0067
GLU 4280.0107
SER 4290.0124
ILE 4300.0076
LYS 4310.0088
CYS 4320.0078
PRO 4330.0019
CYS 4340.0016
GLU 4350.0015
PRO 4360.0029
GLU 4370.0030
ARG 4380.0027
ILE 4390.0077
SER 4400.0079
GLU 4410.0117
SER 4420.0106
THR 4430.0079
CYS 4440.0090
ASN 4450.0055
PHE 4460.0056
TYR 4470.0058
VAL 4480.0028
CYS 4490.0014
ASN 4500.0020
CYS 4510.0052
VAL 4520.0065
GLU 4530.0092
LYS 4540.0168
GLU 10.0275
VAL 20.0214
GLN 30.0127
LEU 40.0118
VAL 50.0083
GLU 60.0076
SER 70.0075
GLY 80.0118
GLY 90.0144
GLY 100.0195
LEU 110.0168
VAL 120.0151
LYS 130.0064
PRO 140.0084
GLY 150.0068
GLY 160.0087
SER 170.0090
LEU 180.0149
LYS 190.0098
LEU 200.0083
SER 210.0057
CYS 220.0092
ALA 230.0087
ALA 240.0119
SER 250.0178
GLY 260.0183
PHE 270.0199
ILE 280.0112
PHE 290.0110
SER 300.0099
ASP 310.0059
TYR 320.0074
TYR 330.0083
MET 340.0066
TYR 350.0057
TRP 360.0051
VAL 370.0093
ARG 380.0099
GLN 390.0102
THR 400.0147
PRO 410.0185
GLU 420.0178
LYS 430.0180
ARG 440.0171
LEU 450.0127
GLU 460.0065
TRP 470.0065
VAL 480.0077
ALA 490.0043
THR 500.0039
ILE 510.0040
SER 520.0092
ASP 520.0056
GLY 530.0107
ASN 540.0159
SER 550.0139
TYR 560.0136
THR 570.0140
TYR 580.0107
TYR 590.0116
VAL 600.0121
ASP 610.0223
SER 620.0166
VAL 630.0126
LYS 640.0159
GLY 650.0113
ARG 660.0102
PHE 670.0076
THR 680.0058
ILE 690.0063
SER 700.0089
ARG 710.0065
ASP 720.0048
ASN 730.0057
ALA 740.0070
LYS 750.0061
ASN 760.0042
ASN 770.0041
LEU 780.0054
TYR 790.0061
LEU 800.0060
GLN 810.0052
MET 820.0060
SER 820.0039
SER 820.0082
LEU 820.0066
LYS 830.0113
SER 840.0128
GLU 850.0127
ASP 860.0121
THR 870.0116
ALA 880.0063
ILE 890.0062
TYR 900.0061
TYR 910.0094
CYS 920.0107
ALA 930.0109
ARG 940.0150
ASP 950.0136
GLY 960.0139
PRO 970.0218
THR 980.0199
ASP 990.0138
SER 1000.0082
SER 1000.0076
GLY 1000.0063
TYR 1000.0057
GLY 1000.0074
GLY 1000.0086
PHE 1000.0108
GLY 1010.0111
TYR 1020.0135
TRP 1030.0106
GLY 1040.0104
GLN 1050.0081
GLY 1060.0050
THR 1070.0063
LEU 1080.0098
VAL 1090.0139
THR 1100.0152
VAL 1110.0124
SER 1120.0147
GLU 1130.0077
ALA 1140.0068
LYS 1150.0306
THR 1160.0159
THR 1170.0159
PRO 1180.0121
PRO 1190.0173
SER 1200.0215
VAL 1210.0096
TYR 1220.0099
PRO 1230.0125
LEU 1240.0129
ALA 1250.0190
PRO 1260.0246
GLY 1270.0271
SER 1280.0316
ALA 1290.0871
ALA 1300.0339
GLN 1330.0335
THR 1340.0299
ASN 1350.0296
SER 1360.0223
MET 1370.0066
VAL 1380.0120
THR 1390.0135
LEU 1400.0111
GLY 1410.0094
CYS 1420.0082
LEU 1430.0099
VAL 1440.0152
LYS 1450.0218
GLY 1460.0197
TYR 1470.0177
PHE 1480.0099
PRO 1490.0102
GLU 1500.0128
PRO 1510.0203
VAL 1520.0160
THR 1530.0184
VAL 1540.0063
THR 1560.0099
TRP 1570.0102
ASN 1620.0105
SER 1630.0181
GLY 1640.0240
SER 1650.0272
LEU 1660.0196
SER 1670.0295
SER 1680.0236
GLY 1690.0210
VAL 1710.0146
HIS 1720.0100
THR 1730.0118
PHE 1740.0198
PRO 1750.0212
ALA 1760.0160
VAL 1770.0142
LEU 1780.0106
GLN 1790.0393
SER 1800.0398
ASP 1830.0143
LEU 1840.0154
TYR 1850.0147
THR 1860.0122
LEU 1870.0134
SER 1880.0134
SER 1890.0068
SER 1900.0064
VAL 1910.0108
THR 1920.0152
VAL 1930.0085
PRO 1940.0058
SER 1950.0150
SER 1960.0173
PRO 1980.0193
ARG 1990.0167
PRO 2000.0202
SER 2020.0260
GLU 2030.0250
THR 2040.0225
VAL 2050.0074
THR 2060.0081
CYS 2080.0072
ASN 2090.0056
VAL 2100.0078
ALA 2110.0220
HIS 2120.0153
PRO 2130.0189
ALA 2140.0219
SER 2150.0133
SER 2160.0205
THR 2170.0125
LYS 2180.0188
VAL 2190.0204
ASP 2200.0098
LYS 2210.0114
LYS 2220.0142
ILE 2230.0173
VAL 2260.0268
PRO 2270.0392
ARG 2280.0349
ASP 2320.0539
CYS 2330.0364
SER 20.0173
VAL 30.0203
LEU 40.0210
SER 50.0201
GLN 60.0171
SER 70.0158
PRO 80.0120
ALA 90.0090
ILE 100.0159
LEU 110.0170
SER 120.0174
ALA 130.0154
SER 140.0149
PRO 150.0116
GLY 160.0173
GLU 170.0169
LYS 180.0196
VAL 190.0205
THR 200.0105
MET 210.0119
THR 220.0138
CYS 230.0206
ARG 240.0174
ALA 250.0093
ARG 260.0125
SER 270.0271
SER 290.0113
VAL 300.0021
SER 310.0043
TYR 320.0088
MET 330.0107
HIS 340.0113
TRP 350.0071
TYR 360.0059
GLN 370.0046
GLN 380.0091
LYS 390.0111
SER 400.0089
GLY 410.0134
SER 420.0047
SER 430.0072
PRO 440.0080
LYS 450.0050
PRO 460.0078
TRP 470.0045
ILE 480.0071
HIS 490.0084
ALA 500.0114
THR 510.0108
SER 520.0121
ASN 530.0104
LEU 540.0085
ALA 550.0061
SER 560.0154
GLY 570.0041
VAL 580.0083
PRO 590.0087
ALA 600.0092
ARG 610.0135
PHE 620.0073
SER 630.0085
GLY 640.0089
SER 650.0131
GLY 660.0119
SER 670.0127
GLY 680.0165
THR 690.0151
SER 700.0214
TYR 710.0119
SER 720.0100
LEU 730.0093
THR 740.0176
ILE 750.0155
SER 760.0163
ARG 770.0221
VAL 780.0166
GLU 790.0091
ALA 800.0235
GLU 810.0268
ASP 820.0280
ALA 830.0210
ALA 840.0129
THR 850.0095
TYR 860.0068
TYR 870.0093
CYS 880.0123
GLN 890.0095
GLN 900.0077
TRP 910.0065
SER 920.0036
SER 930.0052
HIS 940.0080
PRO 950.0102
PRO 960.0100
THR 970.0113
PHE 980.0131
GLY 990.0151
SER 1000.0163
GLY 1010.0078
THR 1020.0035
LYS 1030.0075
LEU 1040.0169
GLU 1050.0134
ILE 1060.0121
LYS 1070.0142
ARG 1080.0189
ALA 1090.0286
ASP 1100.0221
ALA 1110.0235
ALA 1120.0228
PRO 1130.0141
THR 1140.0142
VAL 1150.0169
SER 1160.0074
ILE 1170.0062
PHE 1180.0099
PRO 1190.0129
PRO 1200.0100
SER 1210.0072
SER 1220.0122
GLU 1230.0075
GLN 1240.0112
LEU 1250.0152
THR 1260.0136
SER 1270.0162
GLY 1280.0143
GLY 1290.0149
ALA 1300.0154
SER 1310.0073
VAL 1320.0064
VAL 1330.0041
CYS 1340.0051
PHE 1350.0063
LEU 1360.0095
ASN 1370.0149
ASN 1380.0120
PHE 1390.0141
TYR 1400.0204
PRO 1410.0238
LYS 1420.0259
ASP 1430.0272
ILE 1440.0216
ASN 1450.0235
VAL 1460.0075
LYS 1470.0049
TRP 1480.0051
LYS 1490.0085
ILE 1500.0109
ASP 1510.0125
GLY 1520.0231
SER 1530.0231
GLU 1540.0197
ARG 1550.0096
GLN 1560.0130
ASN 1570.0223
GLY 1580.0052
VAL 1590.0034
LEU 1600.0037
ASN 1610.0146
SER 1620.0194
TRP 1630.0241
THR 1640.0159
ASP 1650.0066
GLN 1660.0057
ASP 1670.0104
SER 1680.0359
LYS 1690.0474
ASP 1700.0153
SER 1710.0102
THR 1720.0134
TYR 1730.0131
SER 1740.0149
MET 1750.0175
SER 1760.0125
SER 1770.0075
THR 1780.0037
LEU 1790.0087
THR 1800.0106
LEU 1810.0114
THR 1820.0145
LYS 1830.0120
ASP 1840.0088
GLU 1850.0155
TYR 1860.0144
GLU 1870.0133
ARG 1880.0182
HIS 1890.0180
ASN 1900.0155
SER 1910.0105
TYR 1920.0111
THR 1930.0099
CYS 1940.0108
GLU 1950.0138
ALA 1960.0195
THR 1970.0211
HIS 1980.0168
LYS 1990.0100
THR 2000.0105
SER 2010.0189
THR 2020.0417
SER 2030.0341
PRO 2040.0328
ILE 2050.0396
VAL 2060.0243
LYS 2070.0208
SER 2080.0131
PHE 2090.0136
ASN 2100.0135
ARG 2110.0139
ASN 2120.0193
GLU 2130.0150
CYS 2140.0115

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.