Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
Some cleaning from time to time
Sorry for the inconvenience.

* 2J4W Structure of a Plasmodium vivax apical membrane antigen 1-Fab F8.12.19 complex *

CA strain for 2608162333311823063

--- normal mode 9 ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA i CA i+1 vari
ILE 421 PHE 422 -0.0000

PHE 422 ILE 423 0.0000

ILE 423 SER 424 -0.0047

SER 424 ASN 425 0.0001

ASN 425 ASP 426 0.0001

ASP 426 LYS 427 -0.0447

LYS 427 GLU 428 -0.0002

GLU 428 SER 429 0.0002

SER 429 ILE 430 0.0238

ILE 430 LYS 431 -0.0002

LYS 431 CYS 432 0.0001

CYS 432 PRO 433 0.0142

PRO 433 CYS 434 0.0001

CYS 434 GLU 435 -0.0003

GLU 435 PRO 436 -0.0249

PRO 436 GLU 437 0.0004

GLU 437 ARG 438 0.0003

ARG 438 ILE 439 -0.0354

ILE 439 SER 440 -0.0002

SER 440 GLU 441 0.0001

GLU 441 SER 442 0.0221

SER 442 THR 443 0.0000

THR 443 CYS 444 -0.0002

CYS 444 ASN 445 -0.0188

ASN 445 PHE 446 -0.0003

PHE 446 TYR 447 0.0000

TYR 447 VAL 448 0.0769

VAL 448 CYS 449 0.0001

CYS 449 ASN 450 0.0000

ASN 450 CYS 451 0.0334

CYS 451 VAL 452 -0.0001

VAL 452 GLU 453 0.0005

GLU 453 LYS 454 0.0055

LYS 454 GLU 1 0.0008

GLU 1 VAL 2 0.0003

VAL 2 GLN 3 -0.0001

GLN 3 LEU 4 -0.0155

LEU 4 VAL 5 -0.0001

VAL 5 GLU 6 0.0000

GLU 6 SER 7 -0.0045

SER 7 GLY 8 -0.0000

GLY 8 GLY 9 -0.0004

GLY 9 GLY 10 -0.3233

GLY 10 LEU 11 0.0000

LEU 11 VAL 12 0.0002

VAL 12 LYS 13 0.0038

LYS 13 PRO 14 0.0001

PRO 14 GLY 15 0.0001

GLY 15 GLY 16 0.0719

GLY 16 SER 17 0.0002

SER 17 LEU 18 -0.0002

LEU 18 LYS 19 -0.0451

LYS 19 LEU 20 0.0001

LEU 20 SER 21 0.0001

SER 21 CYS 22 0.0518

CYS 22 ALA 23 -0.0005

ALA 23 ALA 24 0.0001

ALA 24 SER 25 0.0077

SER 25 GLY 26 0.0001

GLY 26 PHE 27 0.0004

PHE 27 ILE 28 0.0058

ILE 28 PHE 29 -0.0001

PHE 29 SER 30 -0.0001

SER 30 ASP 31 -0.0240

ASP 31 TYR 32 0.0001

TYR 32 TYR 33 -0.0002

TYR 33 MET 34 -0.0759

MET 34 TYR 35 0.0003

TYR 35 TRP 36 -0.0001

TRP 36 VAL 37 0.0119

VAL 37 ARG 38 0.0002

ARG 38 GLN 39 -0.0002

GLN 39 THR 40 0.0166

THR 40 PRO 41 0.0000

PRO 41 GLU 42 -0.0001

GLU 42 LYS 43 0.0360

LYS 43 ARG 44 0.0001

ARG 44 LEU 45 -0.0003

LEU 45 GLU 46 0.0668

GLU 46 TRP 47 -0.0001

TRP 47 VAL 48 0.0001

VAL 48 ALA 49 0.0093

ALA 49 THR 50 0.0001

THR 50 ILE 51 -0.0002

ILE 51 SER 52 -0.0363

SER 52 ASP 52 -0.0001

ASP 52 GLY 53 0.0003

GLY 53 ASN 54 -0.0005

ASN 54 SER 55 -0.0196

SER 55 TYR 56 -0.0002

TYR 56 THR 57 0.0004

THR 57 TYR 58 -0.0114

TYR 58 TYR 59 0.0000

TYR 59 VAL 60 -0.0004

VAL 60 ASP 61 0.0121

ASP 61 SER 62 0.0002

SER 62 VAL 63 -0.0001

VAL 63 LYS 64 0.0314

LYS 64 GLY 65 0.0001

GLY 65 ARG 66 0.0000

ARG 66 PHE 67 0.0235

PHE 67 THR 68 0.0001

THR 68 ILE 69 0.0000

ILE 69 SER 70 0.0455

SER 70 ARG 71 0.0004

ARG 71 ASP 72 -0.0000

ASP 72 ASN 73 -0.0056

ASN 73 ALA 74 -0.0003

ALA 74 LYS 75 0.0002

LYS 75 ASN 76 0.0022

ASN 76 ASN 77 0.0001

ASN 77 LEU 78 -0.0001

LEU 78 TYR 79 0.0012

TYR 79 LEU 80 0.0005

LEU 80 GLN 81 0.0000

GLN 81 MET 82 0.0135

MET 82 SER 82 -0.0001

SER 82 SER 82 0.0004

SER 82 LEU 82 -0.0001

LEU 82 LYS 83 0.0004

LYS 83 SER 84 -0.0002

SER 84 GLU 85 0.0119

GLU 85 ASP 86 -0.0001

ASP 86 THR 87 -0.0002

THR 87 ALA 88 0.0311

ALA 88 ILE 89 0.0003

ILE 89 TYR 90 -0.0005

TYR 90 TYR 91 -0.0127

TYR 91 CYS 92 0.0002

CYS 92 ALA 93 -0.0004

ALA 93 ARG 94 -0.0508

ARG 94 ASP 95 -0.0000

ASP 95 GLY 96 -0.0001

GLY 96 PRO 97 -0.0149

PRO 97 THR 98 0.0000

THR 98 ASP 99 -0.0001

ASP 99 SER 100 0.0087

SER 100 SER 100 0.0004

SER 100 GLY 100 -0.0003

GLY 100 TYR 100 -0.0003

TYR 100 GLY 100 -0.0002

GLY 100 GLY 100 0.0002

GLY 100 PHE 100 0.0001

PHE 100 GLY 101 0.0001

GLY 101 TYR 102 0.0000

TYR 102 TRP 103 0.0054

TRP 103 GLY 104 0.0003

GLY 104 GLN 105 -0.0001

GLN 105 GLY 106 -0.0249

GLY 106 THR 107 0.0000

THR 107 LEU 108 -0.0001

LEU 108 VAL 109 -0.0101

VAL 109 THR 110 -0.0000

THR 110 VAL 111 -0.0002

VAL 111 SER 112 -0.0500

SER 112 GLU 113 0.0002

GLU 113 ALA 114 0.0002

ALA 114 LYS 115 0.0128

LYS 115 THR 116 -0.0002

THR 116 THR 117 0.0005

THR 117 PRO 118 -0.0791

PRO 118 PRO 119 -0.0003

PRO 119 SER 120 -0.0002

SER 120 VAL 121 -0.1667

VAL 121 TYR 122 -0.0004

TYR 122 PRO 123 0.0005

PRO 123 LEU 124 -0.0491

LEU 124 ALA 125 -0.0001

ALA 125 PRO 126 0.0001

PRO 126 GLY 127 0.0456

GLY 127 SER 128 0.0003

SER 128 ALA 129 -0.0002

ALA 129 ALA 130 0.0735

ALA 130 GLN 133 -0.0231

GLN 133 THR 134 0.0000

THR 134 ASN 135 0.0002

ASN 135 SER 136 -0.0065

SER 136 MET 137 -0.0001

MET 137 VAL 138 0.0003

VAL 138 THR 139 -0.0155

THR 139 LEU 140 0.0002

LEU 140 GLY 141 -0.0001

GLY 141 CYS 142 -0.0804

CYS 142 LEU 143 0.0002

LEU 143 VAL 144 0.0003

VAL 144 LYS 145 0.0238

LYS 145 GLY 146 -0.0000

GLY 146 TYR 147 0.0000

TYR 147 PHE 148 -0.3065

PHE 148 PRO 149 -0.0003

PRO 149 GLU 150 0.0000

GLU 150 PRO 151 0.1633

PRO 151 VAL 152 -0.0001

VAL 152 THR 153 -0.0001

THR 153 VAL 154 0.1117

VAL 154 THR 156 0.0496

THR 156 TRP 157 -0.0003

TRP 157 ASN 162 0.0076

ASN 162 SER 163 -0.0001

SER 163 GLY 164 -0.0000

GLY 164 SER 165 0.0141

SER 165 LEU 166 0.0002

LEU 166 SER 167 0.0000

SER 167 SER 168 -0.0233

SER 168 GLY 169 0.0000

GLY 169 VAL 171 0.0099

VAL 171 HIS 172 -0.0002

HIS 172 THR 173 0.0005

THR 173 PHE 174 0.0509

PHE 174 PRO 175 0.0000

PRO 175 ALA 176 -0.0004

ALA 176 VAL 177 0.0303

VAL 177 LEU 178 0.0001

LEU 178 GLN 179 -0.0002

GLN 179 SER 180 -0.0231

SER 180 ASP 183 -0.1113

ASP 183 LEU 184 -0.0001

LEU 184 TYR 185 0.0002

TYR 185 THR 186 -0.1414

THR 186 LEU 187 0.0002

LEU 187 SER 188 -0.0001

SER 188 SER 189 -0.0081

SER 189 SER 190 0.0001

SER 190 VAL 191 0.0001

VAL 191 THR 192 0.0234

THR 192 VAL 193 0.0002

VAL 193 PRO 194 -0.0000

PRO 194 SER 195 0.0230

SER 195 SER 196 0.0001

SER 196 PRO 198 0.0027

PRO 198 ARG 199 -0.0001

ARG 199 PRO 200 0.0005

PRO 200 SER 202 -0.0068

SER 202 GLU 203 0.0001

GLU 203 THR 204 0.0001

THR 204 VAL 205 0.0043

VAL 205 THR 206 -0.0001

THR 206 CYS 208 0.0026

CYS 208 ASN 209 0.0003

ASN 209 VAL 210 -0.0001

VAL 210 ALA 211 0.0706

ALA 211 HIS 212 0.0003

HIS 212 PRO 213 -0.0001

PRO 213 ALA 214 0.1151

ALA 214 SER 215 -0.0001

SER 215 SER 216 -0.0000

SER 216 THR 217 0.0012

THR 217 LYS 218 0.0000

LYS 218 VAL 219 0.0002

VAL 219 ASP 220 -0.0584

ASP 220 LYS 221 0.0002

LYS 221 LYS 222 -0.0000

LYS 222 ILE 223 -0.0162

ILE 223 VAL 226 0.0239

VAL 226 PRO 227 -0.0006

PRO 227 ARG 228 0.0003

ARG 228 ASP 232 0.0403

ASP 232 CYS 233 -0.0001

CYS 233 SER 2 -0.0557

SER 2 VAL 3 -0.0002

VAL 3 LEU 4 -0.0003

LEU 4 SER 5 0.0790

SER 5 GLN 6 0.0003

GLN 6 SER 7 -0.0004

SER 7 PRO 8 0.1394

PRO 8 ALA 9 0.0003

ALA 9 ILE 10 0.0002

ILE 10 LEU 11 -0.0211

LEU 11 SER 12 0.0002

SER 12 ALA 13 -0.0004

ALA 13 SER 14 -0.0064

SER 14 PRO 15 0.0002

PRO 15 GLY 16 0.0001

GLY 16 GLU 17 0.0087

GLU 17 LYS 18 -0.0001

LYS 18 VAL 19 0.0000

VAL 19 THR 20 0.0688

THR 20 MET 21 -0.0003

MET 21 THR 22 -0.0003

THR 22 CYS 23 0.0391

CYS 23 ARG 24 0.0001

ARG 24 ALA 25 0.0001

ALA 25 ARG 26 0.0123

ARG 26 SER 27 0.0001

SER 27 SER 29 0.0127

SER 29 VAL 30 -0.0001

VAL 30 SER 31 -0.0005

SER 31 TYR 32 0.0083

TYR 32 MET 33 0.0003

MET 33 HIS 34 0.0000

HIS 34 TRP 35 -0.0093

TRP 35 TYR 36 0.0002

TYR 36 GLN 37 -0.0002

GLN 37 GLN 38 -0.0150

GLN 38 LYS 39 0.0001

LYS 39 SER 40 0.0001

SER 40 GLY 41 -0.0787

GLY 41 SER 42 0.0002

SER 42 SER 43 0.0000

SER 43 PRO 44 0.0020

PRO 44 LYS 45 0.0000

LYS 45 PRO 46 -0.0000

PRO 46 TRP 47 0.0074

TRP 47 ILE 48 -0.0003

ILE 48 HIS 49 0.0001

HIS 49 ALA 50 -0.0010

ALA 50 THR 51 -0.0000

THR 51 SER 52 -0.0003

SER 52 ASN 53 0.0034

ASN 53 LEU 54 0.0002

LEU 54 ALA 55 -0.0000

ALA 55 SER 56 0.0178

SER 56 GLY 57 -0.0003

GLY 57 VAL 58 0.0001

VAL 58 PRO 59 -0.0195

PRO 59 ALA 60 0.0002

ALA 60 ARG 61 -0.0002

ARG 61 PHE 62 -0.0021

PHE 62 SER 63 0.0002

SER 63 GLY 64 0.0002

GLY 64 SER 65 -0.0213

SER 65 GLY 66 -0.0002

GLY 66 SER 67 0.0002

SER 67 GLY 68 -0.0201

GLY 68 THR 69 -0.0000

THR 69 SER 70 0.0001

SER 70 TYR 71 0.0022

TYR 71 SER 72 -0.0001

SER 72 LEU 73 0.0003

LEU 73 THR 74 0.0222

THR 74 ILE 75 0.0002

ILE 75 SER 76 0.0002

SER 76 ARG 77 0.0136

ARG 77 VAL 78 -0.0003

VAL 78 GLU 79 -0.0001

GLU 79 ALA 80 0.0644

ALA 80 GLU 81 0.0001

GLU 81 ASP 82 0.0002

ASP 82 ALA 83 -0.0237

ALA 83 ALA 84 -0.0000

ALA 84 THR 85 -0.0001

THR 85 TYR 86 0.0134

TYR 86 TYR 87 0.0000

TYR 87 CYS 88 0.0002

CYS 88 GLN 89 0.0540

GLN 89 GLN 90 0.0001

GLN 90 TRP 91 0.0004

TRP 91 SER 92 0.0154

SER 92 SER 93 0.0000

SER 93 HIS 94 -0.0001

HIS 94 PRO 95 -0.0134

PRO 95 PRO 96 -0.0000

PRO 96 THR 97 -0.0001

THR 97 PHE 98 0.0754

PHE 98 GLY 99 -0.0002

GLY 99 SER 100 0.0001

SER 100 GLY 101 0.0525

GLY 101 THR 102 0.0000

THR 102 LYS 103 0.0002

LYS 103 LEU 104 0.0508

LEU 104 GLU 105 0.0001

GLU 105 ILE 106 -0.0003

ILE 106 LYS 107 0.0072

LYS 107 ARG 108 -0.0001

ARG 108 ALA 109 -0.0001

ALA 109 ASP 110 0.0907

ASP 110 ALA 111 0.0002

ALA 111 ALA 112 0.0004

ALA 112 PRO 113 0.0687

PRO 113 THR 114 0.0000

THR 114 VAL 115 -0.0001

VAL 115 SER 116 0.0813

SER 116 ILE 117 -0.0001

ILE 117 PHE 118 0.0002

PHE 118 PRO 119 0.0403

PRO 119 PRO 120 0.0002

PRO 120 SER 121 0.0002

SER 121 SER 122 0.0685

SER 122 GLU 123 -0.0003

GLU 123 GLN 124 -0.0001

GLN 124 LEU 125 -0.0434

LEU 125 THR 126 -0.0003

THR 126 SER 127 -0.0001

SER 127 GLY 128 0.0003

GLY 128 GLY 129 0.0001

GLY 129 ALA 130 -0.0000

ALA 130 SER 131 0.0099

SER 131 VAL 132 0.0002

VAL 132 VAL 133 0.0000

VAL 133 CYS 134 0.0457

CYS 134 PHE 135 0.0001

PHE 135 LEU 136 -0.0004

LEU 136 ASN 137 0.0578

ASN 137 ASN 138 -0.0002

ASN 138 PHE 139 -0.0001

PHE 139 TYR 140 0.0620

TYR 140 PRO 141 -0.0002

PRO 141 LYS 142 -0.0000

LYS 142 ASP 143 -0.1101

ASP 143 ILE 144 -0.0002

ILE 144 ASN 145 -0.0003

ASN 145 VAL 146 -0.0803

VAL 146 LYS 147 -0.0001

LYS 147 TRP 148 0.0001

TRP 148 LYS 149 -0.0600

LYS 149 ILE 150 -0.0003

ILE 150 ASP 151 -0.0000

ASP 151 GLY 152 -0.0002

GLY 152 SER 153 -0.0001

SER 153 GLU 154 -0.0001

GLU 154 ARG 155 -0.0335

ARG 155 GLN 156 -0.0000

GLN 156 ASN 157 0.0001

ASN 157 GLY 158 -0.0941

GLY 158 VAL 159 -0.0004

VAL 159 LEU 160 0.0000

LEU 160 ASN 161 -0.1379

ASN 161 SER 162 -0.0001

SER 162 TRP 163 -0.0000

TRP 163 THR 164 -0.1668

THR 164 ASP 165 0.0000

ASP 165 GLN 166 0.0001

GLN 166 ASP 167 0.0068

ASP 167 SER 168 0.0000

SER 168 LYS 169 -0.0003

LYS 169 ASP 170 0.0002

ASP 170 SER 171 0.0001

SER 171 THR 172 -0.0001

THR 172 TYR 173 -0.0149

TYR 173 SER 174 0.0001

SER 174 MET 175 -0.0000

MET 175 SER 176 -0.0411

SER 176 SER 177 0.0003

SER 177 THR 178 -0.0004

THR 178 LEU 179 -0.0584

LEU 179 THR 180 0.0000

THR 180 LEU 181 0.0001

LEU 181 THR 182 -0.0123

THR 182 LYS 183 0.0000

LYS 183 ASP 184 -0.0003

ASP 184 GLU 185 0.0137

GLU 185 TYR 186 0.0000

TYR 186 GLU 187 0.0002

GLU 187 ARG 188 -0.0208

ARG 188 HIS 189 -0.0003

HIS 189 ASN 190 0.0001

ASN 190 SER 191 0.0269

SER 191 TYR 192 -0.0000

TYR 192 THR 193 -0.0002

THR 193 CYS 194 0.0238

CYS 194 GLU 195 -0.0001

GLU 195 ALA 196 0.0000

ALA 196 THR 197 -0.0078

THR 197 HIS 198 -0.0002

HIS 198 LYS 199 0.0001

LYS 199 THR 200 0.0167

THR 200 SER 201 0.0003

SER 201 THR 202 0.0001

THR 202 SER 203 -0.0140

SER 203 PRO 204 -0.0003

PRO 204 ILE 205 -0.0001

ILE 205 VAL 206 0.0621

VAL 206 LYS 207 0.0001

LYS 207 SER 208 0.0001

SER 208 PHE 209 0.0612

PHE 209 ASN 210 -0.0001

ASN 210 ARG 211 0.0003

ARG 211 ASN 212 -0.0280

ASN 212 GLU 213 -0.0004

GLU 213 CYS 214 -0.0001

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.

Should you encounter any unexpected behaviour, please let us know. elNémo has been relocated. **Some cleaning from time to time** Sorry for the inconvenience.

*** 2J4W Structure of a Plasmodium vivax apical membrane antigen 1-Fab F8.12.19 complex ***

CA strain for 2608162333311823063

--- normal mode 9 ---

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
Some cleaning from time to time
Sorry for the inconvenience.

* 2J4W Structure of a Plasmodium vivax apical membrane antigen 1-Fab F8.12.19 complex *