CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  2J4W Structure of a Plasmodium vivax apical membrane antigen 1-Fab F8.12.19 complex  ***

<R2> analysis for 2608162333311823063

---  normal mode 91  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0852
ILE 4210.0304
PHE 4220.0116
ILE 4230.0140
SER 4240.0056
ASN 4250.0088
ASP 4260.0070
LYS 4270.0029
GLU 4280.0052
SER 4290.0059
ILE 4300.0059
LYS 4310.0034
CYS 4320.0011
PRO 4330.0050
CYS 4340.0042
GLU 4350.0038
PRO 4360.0017
GLU 4370.0021
ARG 4380.0025
ILE 4390.0094
SER 4400.0094
GLU 4410.0146
SER 4420.0154
THR 4430.0173
CYS 4440.0163
ASN 4450.0065
PHE 4460.0066
TYR 4470.0065
VAL 4480.0033
CYS 4490.0035
ASN 4500.0049
CYS 4510.0072
VAL 4520.0122
GLU 4530.0137
LYS 4540.0130
GLU 10.0150
VAL 20.0122
GLN 30.0069
LEU 40.0058
VAL 50.0052
GLU 60.0072
SER 70.0066
GLY 80.0101
GLY 90.0103
GLY 100.0243
LEU 110.0246
VAL 120.0273
LYS 130.0361
PRO 140.0203
GLY 150.0185
GLY 160.0158
SER 170.0121
LEU 180.0121
LYS 190.0104
LEU 200.0070
SER 210.0103
CYS 220.0109
ALA 230.0079
ALA 240.0090
SER 250.0126
GLY 260.0159
PHE 270.0207
ILE 280.0197
PHE 290.0158
SER 300.0133
ASP 310.0111
TYR 320.0121
TYR 330.0120
MET 340.0070
TYR 350.0076
TRP 360.0082
VAL 370.0080
ARG 380.0069
GLN 390.0071
THR 400.0128
PRO 410.0273
GLU 420.0248
LYS 430.0219
ARG 440.0138
LEU 450.0088
GLU 460.0091
TRP 470.0081
VAL 480.0058
ALA 490.0057
THR 500.0079
ILE 510.0103
SER 520.0104
ASP 520.0069
GLY 530.0033
ASN 540.0057
SER 550.0107
TYR 560.0091
THR 570.0103
TYR 580.0047
TYR 590.0047
VAL 600.0102
ASP 610.0269
SER 620.0158
VAL 630.0093
LYS 640.0146
GLY 650.0210
ARG 660.0170
PHE 670.0095
THR 680.0106
ILE 690.0120
SER 700.0186
ARG 710.0117
ASP 720.0060
ASN 730.0052
ALA 740.0205
LYS 750.0123
ASN 760.0040
ASN 770.0073
LEU 780.0116
TYR 790.0123
LEU 800.0106
GLN 810.0100
MET 820.0052
SER 820.0044
SER 820.0046
LEU 820.0067
LYS 830.0123
SER 840.0175
GLU 850.0255
ASP 860.0165
THR 870.0147
ALA 880.0075
ILE 890.0041
TYR 900.0064
TYR 910.0061
CYS 920.0048
ALA 930.0041
ARG 940.0116
ASP 950.0122
GLY 960.0132
PRO 970.0150
THR 980.0209
ASP 990.0188
SER 1000.0087
SER 1000.0075
GLY 1000.0071
TYR 1000.0077
GLY 1000.0069
GLY 1000.0069
PHE 1000.0064
GLY 1010.0071
TYR 1020.0072
TRP 1030.0076
GLY 1040.0074
GLN 1050.0079
GLY 1060.0070
THR 1070.0060
LEU 1080.0081
VAL 1090.0118
THR 1100.0184
VAL 1110.0180
SER 1120.0178
GLU 1130.0246
ALA 1140.0220
LYS 1150.0439
THR 1160.0214
THR 1170.0160
PRO 1180.0214
PRO 1190.0172
SER 1200.0141
VAL 1210.0104
TYR 1220.0133
PRO 1230.0162
LEU 1240.0143
ALA 1250.0135
PRO 1260.0109
GLY 1270.0169
SER 1280.0146
ALA 1290.0339
ALA 1300.0344
GLN 1330.0697
THR 1340.0514
ASN 1350.0462
SER 1360.0235
MET 1370.0340
VAL 1380.0333
THR 1390.0058
LEU 1400.0052
GLY 1410.0090
CYS 1420.0155
LEU 1430.0164
VAL 1440.0147
LYS 1450.0105
GLY 1460.0122
TYR 1470.0134
PHE 1480.0088
PRO 1490.0042
GLU 1500.0052
PRO 1510.0231
VAL 1520.0201
THR 1530.0230
VAL 1540.0173
THR 1560.0208
TRP 1570.0245
ASN 1620.0364
SER 1630.0322
GLY 1640.0275
SER 1650.0328
LEU 1660.0261
SER 1670.0190
SER 1680.0173
GLY 1690.0147
VAL 1710.0103
HIS 1720.0094
THR 1730.0155
PHE 1740.0178
PRO 1750.0223
ALA 1760.0182
VAL 1770.0173
LEU 1780.0104
GLN 1790.0081
SER 1800.0059
ASP 1830.0156
LEU 1840.0096
TYR 1850.0064
THR 1860.0145
LEU 1870.0153
SER 1880.0152
SER 1890.0160
SER 1900.0121
VAL 1910.0110
THR 1920.0341
VAL 1930.0337
PRO 1940.0286
SER 1950.0200
SER 1960.0852
PRO 1980.0606
ARG 1990.0457
PRO 2000.0316
SER 2020.0539
GLU 2030.0446
THR 2040.0419
VAL 2050.0249
THR 2060.0322
CYS 2080.0285
ASN 2090.0161
VAL 2100.0118
ALA 2110.0292
HIS 2120.0266
PRO 2130.0275
ALA 2140.0269
SER 2150.0234
SER 2160.0330
THR 2170.0274
LYS 2180.0132
VAL 2190.0086
ASP 2200.0154
LYS 2210.0149
LYS 2220.0203
ILE 2230.0167
VAL 2260.0217
PRO 2270.0204
ARG 2280.0138
ASP 2320.0248
CYS 2330.0212
SER 20.0092
VAL 30.0101
LEU 40.0092
SER 50.0090
GLN 60.0055
SER 70.0061
PRO 80.0098
ALA 90.0091
ILE 100.0086
LEU 110.0103
SER 120.0101
ALA 130.0106
SER 140.0160
PRO 150.0088
GLY 160.0044
GLU 170.0078
LYS 180.0109
VAL 190.0128
THR 200.0045
MET 210.0035
THR 220.0030
CYS 230.0035
ARG 240.0085
ALA 250.0135
ARG 260.0145
SER 270.0173
SER 290.0118
VAL 300.0103
SER 310.0114
TYR 320.0056
MET 330.0050
HIS 340.0052
TRP 350.0046
TYR 360.0057
GLN 370.0064
GLN 380.0076
LYS 390.0103
SER 400.0148
GLY 410.0179
SER 420.0161
SER 430.0125
PRO 440.0094
LYS 450.0090
PRO 460.0079
TRP 470.0076
ILE 480.0085
HIS 490.0098
ALA 500.0099
THR 510.0100
SER 520.0104
ASN 530.0123
LEU 540.0101
ALA 550.0125
SER 560.0221
GLY 570.0175
VAL 580.0078
PRO 590.0053
ALA 600.0082
ARG 610.0089
PHE 620.0055
SER 630.0068
GLY 640.0102
SER 650.0130
GLY 660.0097
SER 670.0099
GLY 680.0092
THR 690.0104
SER 700.0075
TYR 710.0059
SER 720.0051
LEU 730.0051
THR 740.0075
ILE 750.0068
SER 760.0099
ARG 770.0078
VAL 780.0044
GLU 790.0023
ALA 800.0029
GLU 810.0029
ASP 820.0026
ALA 830.0038
ALA 840.0035
THR 850.0043
TYR 860.0036
TYR 870.0044
CYS 880.0047
GLN 890.0034
GLN 900.0048
TRP 910.0052
SER 920.0090
SER 930.0088
HIS 940.0079
PRO 950.0089
PRO 960.0076
THR 970.0068
PHE 980.0075
GLY 990.0082
SER 1000.0092
GLY 1010.0049
THR 1020.0048
LYS 1030.0042
LEU 1040.0036
GLU 1050.0039
ILE 1060.0037
LYS 1070.0086
ARG 1080.0086
ALA 1090.0117
ASP 1100.0077
ALA 1110.0050
ALA 1120.0081
PRO 1130.0107
THR 1140.0104
VAL 1150.0119
SER 1160.0064
ILE 1170.0055
PHE 1180.0043
PRO 1190.0054
PRO 1200.0078
SER 1210.0117
SER 1220.0117
GLU 1230.0069
GLN 1240.0081
LEU 1250.0020
THR 1260.0126
SER 1270.0185
GLY 1280.0076
GLY 1290.0082
ALA 1300.0087
SER 1310.0049
VAL 1320.0036
VAL 1330.0025
CYS 1340.0055
PHE 1350.0053
LEU 1360.0100
ASN 1370.0112
ASN 1380.0114
PHE 1390.0107
TYR 1400.0068
PRO 1410.0120
LYS 1420.0178
ASP 1430.0227
ILE 1440.0144
ASN 1450.0160
VAL 1460.0109
LYS 1470.0080
TRP 1480.0065
LYS 1490.0054
ILE 1500.0048
ASP 1510.0026
GLY 1520.0125
SER 1530.0020
GLU 1540.0130
ARG 1550.0135
GLN 1560.0094
ASN 1570.0084
GLY 1580.0021
VAL 1590.0026
LEU 1600.0038
ASN 1610.0098
SER 1620.0126
TRP 1630.0141
THR 1640.0130
ASP 1650.0088
GLN 1660.0039
ASP 1670.0049
SER 1680.0038
LYS 1690.0061
ASP 1700.0068
SER 1710.0062
THR 1720.0083
TYR 1730.0089
SER 1740.0084
MET 1750.0079
SER 1760.0060
SER 1770.0054
THR 1780.0007
LEU 1790.0030
THR 1800.0038
LEU 1810.0045
THR 1820.0061
LYS 1830.0033
ASP 1840.0053
GLU 1850.0085
TYR 1860.0054
GLU 1870.0044
ARG 1880.0091
HIS 1890.0051
ASN 1900.0039
SER 1910.0058
TYR 1920.0076
THR 1930.0093
CYS 1940.0113
GLU 1950.0068
ALA 1960.0077
THR 1970.0114
HIS 1980.0107
LYS 1990.0118
THR 2000.0128
SER 2010.0155
THR 2020.0246
SER 2030.0496
PRO 2040.0260
ILE 2050.0191
VAL 2060.0117
LYS 2070.0130
SER 2080.0132
PHE 2090.0071
ASN 2100.0067
ARG 2110.0065
ASN 2120.0163
GLU 2130.0164
CYS 2140.0193

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.