CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  HYDROLASE 05-MAR-19 6O69  ***

Normal Mode Analysis for ID 2610021316081810631

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

WARNING: there are 1 low-collectivity modes among your first 5 modes (see below)! The degree of collectivity indicates the fraction of residues that are significantly affected by a given mode. While low-frequency modes are expected to have collective character, computed ones sometimes happen to be localized. In such cases, they correspond to motions of some extended parts of the system, as often observed in crystallographic protein structures for N- and C-termini.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.4991
mode 8 1.12 0.3395
mode 9 1.14 0.1624
mode 10 1.32 0.0886
mode 11 1.46 0.4190
mode 12 1.49 0.3884
mode 13 1.60 0.4473
mode 14 1.62 0.1770
mode 15 1.62 0.4246
mode 16 1.78 0.3148
mode 17 1.84 0.6290
mode 18 1.88 0.5778
mode 19 2.01 0.2827
mode 20 2.05 0.1338
mode 21 2.15 0.5868
mode 22 2.19 0.5581
mode 23 2.22 0.6775
mode 24 2.30 0.5241
mode 25 2.36 0.5655
mode 26 2.42 0.4764
mode 27 2.46 0.4709
mode 28 2.47 0.5559
mode 29 2.60 0.5882
mode 30 2.61 0.4033
mode 31 2.65 0.4130
mode 32 2.70 0.5964
mode 33 2.74 0.4608
mode 34 2.81 0.5418
mode 35 2.83 0.5311
mode 36 2.89 0.3675
mode 37 2.95 0.5416
mode 38 2.99 0.3678
mode 39 3.03 0.4733
mode 40 3.07 0.4192
mode 41 3.12 0.5209
mode 42 3.14 0.4653
mode 43 3.21 0.5031
mode 44 3.22 0.4738
mode 45 3.27 0.4047
mode 46 3.32 0.5232
mode 47 3.34 0.1409
mode 48 3.35 0.4138
mode 49 3.37 0.3655
mode 50 3.41 0.3092
mode 51 3.43 0.2225
mode 52 3.46 0.4357
mode 53 3.50 0.4167
mode 54 3.52 0.4126
mode 55 3.53 0.4939
mode 56 3.57 0.4419
mode 57 3.61 0.5161
mode 58 3.64 0.4624
mode 59 3.66 0.4429
mode 60 3.70 0.5511
mode 61 3.71 0.3558
mode 62 3.75 0.4614
mode 63 3.77 0.4781
mode 64 3.79 0.3954
mode 65 3.82 0.3697
mode 66 3.84 0.3670
mode 67 3.86 0.5311
mode 68 3.89 0.4088
mode 69 3.90 0.4950
mode 70 3.93 0.4400
mode 71 3.93 0.5183
mode 72 3.96 0.3595
mode 73 4.00 0.4205
mode 74 4.02 0.4270
mode 75 4.02 0.5029
mode 76 4.07 0.4680
mode 77 4.09 0.5572
mode 78 4.15 0.4951
mode 79 4.18 0.4456
mode 80 4.18 0.4594
mode 81 4.24 0.3800
mode 82 4.24 0.4160
mode 83 4.26 0.5084
mode 84 4.29 0.3270
mode 85 4.29 0.4062
mode 86 4.31 0.3251
mode 87 4.35 0.5315
mode 88 4.37 0.3301
mode 89 4.38 0.4595
mode 90 4.40 0.3712
mode 91 4.40 0.3594
mode 92 4.42 0.3693
mode 93 4.45 0.4583
mode 94 4.45 0.4603
mode 95 4.48 0.4011
mode 96 4.50 0.4075
mode 97 4.53 0.4457
mode 98 4.55 0.3430
mode 99 4.56 0.5150
mode 100 4.58 0.4012
mode 101 4.59 0.4405
mode 102 4.61 0.4172
mode 103 4.64 0.4160
mode 104 4.65 0.5456
mode 105 4.66 0.4667
mode 106 4.66 0.4092

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.