CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.
 elNémo has been relocated.
**Some cleaning from time to time**
Sorry for the inconvenience.


***  DNA polimerase com DNA  ***

Normal Mode Analysis for ID 2610141417151088793

The following table indicates for every normal mode its frequency (black, normalized relative to the lowest mode frequency) and its collectivity (magenta). If a second structure was submitted, the cummulative overlap between the normal modes and the conformational change is computed (red). The corresponding amplitude (dq) is then also given (green). Click on the mode link to obtain a visualization of the mean square displacement <R2> of the C-alpha atoms associated to each mode.

[HELP on collectivity] [HELP on overlap]

<R2> frequency collectivity
mode 7 1.00 0.5754
mode 8 1.69 0.3954
mode 9 2.07 0.3550
mode 10 2.20 0.2953
mode 11 2.38 0.2610
mode 12 2.63 0.5204
mode 13 2.88 0.4484
mode 14 3.52 0.2832
mode 15 3.84 0.2884
mode 16 3.98 0.1945
mode 17 4.05 0.1594
mode 18 4.27 0.2063
mode 19 4.41 0.2161
mode 20 4.53 0.0539
mode 21 4.79 0.3621
mode 22 4.96 0.3127
mode 23 5.32 0.3926
mode 24 5.61 0.5071
mode 25 5.97 0.4019
mode 26 6.14 0.2651
mode 27 6.24 0.2416
mode 28 6.39 0.5332
mode 29 6.85 0.3021
mode 30 6.91 0.3078
mode 31 7.12 0.3447
mode 32 7.18 0.0614
mode 33 7.47 0.4904
mode 34 7.68 0.4368
mode 35 7.86 0.4854
mode 36 8.28 0.3576
mode 37 8.36 0.4159
mode 38 8.45 0.2798
mode 39 8.52 0.4081
mode 40 8.68 0.3822
mode 41 8.87 0.3648
mode 42 9.04 0.4624
mode 43 9.22 0.4424
mode 44 9.44 0.0960
mode 45 9.67 0.4979
mode 46 9.78 0.5158
mode 47 9.95 0.4043
mode 48 10.12 0.4625
mode 49 10.49 0.1881
mode 50 10.58 0.4909
mode 51 10.68 0.5116
mode 52 10.85 0.5308
mode 53 10.89 0.3166
mode 54 11.05 0.4363
mode 55 11.17 0.3356
mode 56 11.45 0.3886
mode 57 11.67 0.3746
mode 58 11.80 0.3361
mode 59 11.81 0.3330
mode 60 11.89 0.3047
mode 61 11.93 0.3244
mode 62 12.01 0.3478
mode 63 12.05 0.3209
mode 64 12.17 0.4445
mode 65 12.29 0.2979
mode 66 12.47 0.5174
mode 67 12.59 0.2048
mode 68 12.68 0.4714
mode 69 12.76 0.1691
mode 70 12.86 0.2623
mode 71 12.99 0.2402
mode 72 13.15 0.3612
mode 73 13.28 0.2850
mode 74 13.33 0.2420
mode 75 13.50 0.3797
mode 76 13.62 0.2628
mode 77 13.73 0.3883
mode 78 13.81 0.5440
mode 79 13.90 0.3376
mode 80 13.94 0.3946
mode 81 14.01 0.4839
mode 82 14.05 0.3118
mode 83 14.27 0.4956
mode 84 14.36 0.5226
mode 85 14.44 0.4216
mode 86 14.50 0.3824
mode 87 14.64 0.3062
mode 88 14.79 0.4467
mode 89 14.82 0.1971
mode 90 14.85 0.3625
mode 91 14.91 0.3696
mode 92 15.03 0.3480
mode 93 15.10 0.3667
mode 94 15.12 0.4198
mode 95 15.24 0.3003
mode 96 15.35 0.2671
mode 97 15.37 0.2887
mode 98 15.47 0.3955
mode 99 15.50 0.3766
mode 100 15.63 0.4413
mode 101 15.68 0.3512
mode 102 15.81 0.4107
mode 103 15.84 0.4861
mode 104 15.91 0.4024
mode 105 15.92 0.4450
mode 106 16.01 0.4474

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Between 2015 and 2025, it was hosted by US2B (Nantes).
Last modification: april 24th, 2026.